BAC Information

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BAC

Clone NameMSMg01-542M22
Chromosome12 (Build37)
Map Location 61,283,631 - 61,283,943
singlet/doubletsinglet
Overlap genenone
Upstream geneMgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542M22.T7 (MSMg01no542_m22.b1)MSMg01-542M22.TJ (MSMg01no542_m22.g1)
ACCAG608493AG608494
length775756
length of high quality
(start - end)		315 (49 - 363)622 (78 - 699)
definitionCHROMAT_FILE: MSMg01no542_m22.b1 PHD_FILE: MSMg01no542_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:58 2005CHROMAT_FILE: MSMg01no542_m22.g1 PHD_FILE: MSMg01no542_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCTTCACCGCTCCATATTTGACAGTATTTCCCTTCTACTGC
TCTAACTCTGAGTGCTGGTACTGTTCATTCCACCATCACATAGGCTTCAG
CTTCATGATCTCTACAGCCAGGCACCTGTAATGGGATCTGATGCCCTTTT
CTAATGTGTCTGGGGCTAGAAACAGTGTACCTACATGCATAAAATGAATA
AATAAACATTAAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAG
AGGTGGAGCTTTTAATCCATCCAATCCTTTATTTCTAATATATATATATC
ATCTTGATTATTAAAGTTATGAAAAGGTAGTCAGTTCATTTATCAACTCT
CACTAGAGAAACTTCTTTCATTAGATGGCTATTATTTATTATTAGTGAGT
AAAGATAGATTTTTCCTGTATTTTACCTTTTCAGTTTTATTTACCAAAAA
GCTATTTAAAAAGTAAAGACTGGACAAATTTTAAACAGGGACCTTTCCCC
CTTAAAAGGGTTCTATTAACCTGGGTTTTTCCCCCGGGAACCCCCCCTTT
TAAAACAAAGGTAAATAAAACCCCGCTTTTGGGAAAAAAAACTCCTCAAA
AAGGGGGGCCTCTTTTTTATTTTTGGGCACCCCCCCCGGGTTATATTTTT
GGGGGAAAAATGGGTTTGGGTTTTTTTTTCTCGCCGAAAAATTTTCCCCC
TCTTTTTAGAAAAAAATTTTTCCTC

NNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATT
TTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTA
TATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCT
TTCCCATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCT
ATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGA
GGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATA
TGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGAT
ATAAGATATAATTTGCTAAACACATGAAACTCAAGGAGAATGAAGACTGA
AGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAAACACCCATGGA
AGGAGTTACAGAGACGGAGTTTGGAGCTGAGATGAAAGGATGGACCATGT
AGAGACTGCCATAGCCAGGGATCCACCCCATAATCAGCATCCAAACGCTG
ACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACGCAGATGTAGC
TGTCTCTTGTGAGACTATGCCGGGGCCCAGCAAACACAGAAGTGGATGCT
CACAGTCAGCTAATGGATGGATCATAGGGCTCCCCATGGAGGAGCTAGAG
AAAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_m22.b1 MSMg01no542_m22.b1 CHROMAT_FILE:
MSMg01no542_m22.b1 PHD_FILE: MSMg01no542_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:58 2005
         (315 letters)



>mm_chr12_61283620_61284334
          Length = 715

 Score =  528 bits (273), Expect = e-154
 Identities = 299/315 (94%), Gaps = 14/315 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcttcaccgctccatatttgacagtatttcccttctactgctctaactctgag 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaattcatcttcactgctccatatttgacagtatttcccttctactgctctaactctgag 265

                                                                       
Query: 65  tgctggtactgttcattccaccatcacataggcttcagcttcatgatctctacagccagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctggtactgttcattccaccatcacataggcttcagcttcatgatctctacagccagg 205

                                                                       
Query: 125 cacctgtaatgggatctgatgcccttttctaatgtgtctggggctagaaacagtgtacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cacctgtaatgggatctgatgcccttttctaatgtgtctggggctagaaacagtgtacct 145

                                                                       
Query: 185 acatgcataaaatgaataaataaacattaaagaagaagaag----------aaga--agg 232
           |||||||||||||||||||||||||||||||||||||||||          ||||  |||
Sbjct: 144 acatgcataaaatgaataaataaacattaaagaagaagaaggaggaggaggaagaggagg 85

                                                                       
Query: 233 aggaggaggaggaggaggagaggtggagcttttaatccatccaatcctttatttctaata 292
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  aggaggaggagaaggaggagaggtggagcttttaatccatccaatcctttatttctaata 25

                          
Query: 293 tatatatatcatctt 307
           |||||||  ||||||
Sbjct: 24  tatatat--catctt 12


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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