Query= MSMg01no542_o22.b1 MSMg01no542_o22.b1 CHROMAT_FILE:
MSMg01no542_o22.b1 PHD_FILE: MSMg01no542_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:07 2005
(446 letters)
>mm_chr12_104219858_104220707
Length = 850
Score = 793 bits (410), Expect = 0.0
Identities = 436/448 (97%), Gaps = 8/448 (1%)
Strand = Plus / Minus
Query: 5 gaattccccaagtttcaggtcaaccatgtctcctgtagacagctaacctaccctagcaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattccccaagtttcaggtcaaccatgtctcctgtagacagctaacctaccctagcaca 591
Query: 65 cgtccacattgctgaagttatctgagcgttcccagtcccgggctcctctctggcatgtac 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgtccacattgctgaagttatctgagcgttcccagtcccgggctcctctctggcatgtac 531
Query: 125 cactgcatgatgtggccaataactcaatagctctctccacactggactaccgggagcatc 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 530 cactgcatgatgtggccaataactcaatagctgtctccacactggactaccgggagcatc 471
Query: 185 acttttaatgctgtacacgcagcatattgtaagtgtctggttctgaatatacatttgctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 acttttaatgctgtacacgcagcatattgtaagtgtctggttctgaatatacatttgctg 411
Query: 245 cataaacaagtgaacgtaacacacaactcagtacaaacgaagcagttt----taagtttc 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 410 cataaacaagtgaacgtaacacacaactcagtacaaacgaagcagttttaagtaagtttc 351
Query: 301 tagtcctttcgagaattggagttaaattgtggatatagctaaggttttctgtcccctctt 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tagtcctttcaagaattggagttaaattgtggatatagctaaggttttctgtcccctctt 291
Query: 361 cctggtactcatcccaaggaccactttctcctcaaaacccct--atgcccatcactattt 418
||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 290 cctggtactcatcacaaggaccactttctcctcaaaacccctaaat--ccatcactattt 233
Query: 419 gggagtatggagtgatctgaattaaata 446
||||||||||||||||||||||||||||
Sbjct: 232 gggagtatggagtgatctgaattaaata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 850
Length adjustment: 10
Effective length of query: 436
Effective length of database: 840
Effective search space: 366240
Effective search space used: 366240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_o22.g1 MSMg01no542_o22.g1 CHROMAT_FILE:
MSMg01no542_o22.g1 PHD_FILE: MSMg01no542_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:07 2005
(591 letters)
>mm_chr12_104106768_104107760
Length = 993
Score = 1104 bits (571), Expect = 0.0
Identities = 587/593 (98%), Gaps = 3/593 (0%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgagccccattttttaatgaggttatttgattttctggagtcaaaaag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 202 tttgtttagctctgagccccattttttaatgaggttatttgactttctggagtcaaaaag 261
Query: 61 acacaataagaactggagaaatgtctcaagttagaaaggacctgactttattctacagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acacaataagaactggagaaatgtctcaagttagaaaggacctgactttattctacagac 321
Query: 121 acatttttttttttttttttaaagccaggtgtgcttgtaatttcagcaccaaagaagcag 180
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccatttttttttttttttt-aaagccaggtgtgcttgtaatttcagcaccaaagaagcag 380
Query: 181 agataggcacatgctctacactggatggccaattaatctaccctatctgctaagatctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agataggcacatgctctacactggatggccaattaatctaccctatctgctaagatctca 440
Query: 241 attgatgaaagactctctcaaaaaacaagggagatgattcctacggagcaacatctgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgatgaaagactctctcaaaaaacaagggagatgattcctacggagcaacatctgaag 500
Query: 301 ctgtcctctgggcttcatacacatgcatgtgtgcagacacatggacacacacatgcacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtcctctgggcttcatacacatgcatgtgtgcagacacatggacacacacatgcacat 560
Query: 361 acaatatatttgaagttagttctggcat--gtttctcacttaaaaaaggaaagaatagca 418
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 acaatatatttgaagttagttctggcatatgtttctcacttaaaaaaggaaagaatagca 620
Query: 419 ctataaaagttcaattcaatattgatcctttcataagagactatgacaggataagaccat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctataaaagttcaattcaatattgatcctttcataagagactatgacaggataagaccat 680
Query: 479 attttcttttttaaaaagagacaaacaaatgacttctttttttccccaagatttatttta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attttcttttttaaaaagagacaaacaaatgacttctttttttccccaagatttatttta 740
Query: 539 tttttaaatgatgtatatgtgtgtatctgtgcatgtgaatgtgggtgcctgca 591
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttttaaatgatatatatgtgtgtatctgtgcatgtgaatgtgggtgcctgca 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 993
Length adjustment: 10
Effective length of query: 581
Effective length of database: 983
Effective search space: 571123
Effective search space used: 571123
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
