CCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCATTTCCCATATATGCTCTACTAAAAGCATATTTCATGAA
TAAAAGCAACAGACTTACAAAATAAGTCAACCAAGGAATTTCGTTTTCTT
CAGCAGATGTTTCTTTATGGGTTGAAGTCCATTTCTTCAAATATAATTTC
ATACTCTGCAGTAGAATAAAGCATGTATCATGCACATGATATATGTATTC
ATGTTCATACAACACAGTCTAGATGTTGACATATGGCTGTAACTATATTT
ACTATCTGAACATTATTCTGTCCTGTGCTTTGAAACGTTTCAGTTAATAA
ACGCCAGTGGGGATGATCTCACTGTTATTATCTTACCAAATCCCTTAGAT
ATTTGTAGAAATATGAAGATATTTGTTCTTAAGAATCAAAACCAGCCAAC
TATAAACTATTGCAGCACTTTATAATTAAATGATAACAAGTGATAATACA
CATTAATTGAGTTTATATAATCAAGGATGGCTTACTAATATGAACAGTTG
TCACTATTTGCTTACTAAATTTACCCTAATTATTGTTAGTAAAAGTAAAA
TATTTCACATCATACCAAGAACATTTATAATTCATAATAGATACTTGTAT
TACTTCATCATTGCTATTACAATATATTTACTTGAAGAAAAGATTAAGAT
CTGAAACGCATAATTGCTCCTGCTGCTAGGAACCTTGGTGGAATTTCTCC

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCTCAGCCATATTAACCTTAAC
TAATACAGATATTGGTACCAGGATATTGGTGTATTGAGGTGATAGACTTG
ACTGTGCTGTTTTGGAGAGGATTGCAGAAAGACTGTGCAACATTGGGCTA
AAAACATTATTGAGTATTGTGAGCTCAAGTGGCCTGTTCTGTAGAAGCAT
AGAAGATAATACTGAGAACAGACAGATGATAGATAGATGCCTGGCTTGTG
AATTTCAGAGAAAAATTTAAAGACTCGACTGAGGCCATTTGTTGACTTTG
AATGAATAATGAAGTTCAGATCAGCAGGGGCTGAGGAACCAGTTGTGACT
AACAAGAAACTAGCACCACTGAAGGGAAACCTTTTCTTTACTGGAACAAT
TGATCCTTGTTACTTGGGAATTAGAAATCAGTTACGATTAAGAAGAATCC
AGCATCACTAATGAAATCTTTTTGGAAGTGTTTCTTCAGGGTCACTACAC
AGAAACTGTGTTTCAGAGCTTGTCAAGGTATACCTCATGCTAGCAGCTGA
ATTTTGTAATCTGTAAGAATCTCCCAGATGGTACTAGTTTTGAAGTCATG
AAGACATCATGGGAAGTAGCTGAGGCTTGCCTGAGAAAGTCAGTAAGCAC
TACTCTTTCATGGCCTCTGCATCAGCTCCTGACCCCAGCTTCCTACCCCT
TTTGCTCN

Query= MSMg01no543_d09.b1 MSMg01no543_d09.b1 CHROMAT_FILE:
MSMg01no543_d09.b1 PHD_FILE: MSMg01no543_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:30 2005
         (549 letters)



>mm_chr12_42720144_42721092
          Length = 949

 Score = 1046 bits (541), Expect = 0.0
 Identities = 547/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatatgctctactaaaagcatatttcatgaataaaagcaacagacttacaaaataagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatatgctctactaaaagcatatttcatgaataaaagcaacagacttacaaaataagt 260

                                                                       
Query: 61  caaccaaggaatttcgttttcttcagcagatgtttctttatgggttgaagtccatttctt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaccaaggaatttcattttcttcagcagatgtttctttatgggttgaagtccatttctt 320

                                                                       
Query: 121 caaatataatttcatactctgcagtagaataaagcatgtatcatgcacatgatatatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaatataatttcatactctgcagtagaataaagcatgtatcatgcacatgatatatgta 380

                                                                       
Query: 181 ttcatgttcatacaacacagtctagatgttgacatatggctgtaactatatttactatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatgttcatacaacacagtctagatgttgacatatggctgtaactatatttactatct 440

                                                                       
Query: 241 gaacattattctgtcctgtgctttgaaacgtttcagttaataaacgccagtggggatgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacattattctgtcctgtgctttgaaacgtttcagttaataaacgccagtggggatgat 500

                                                                       
Query: 301 ctcactgttattatcttaccaaatcccttagatatttgtagaaatatgaagatatttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcactgttattatcttaccaaatcccttagatatttgtagaaatatgaagatatttgtt 560

                                                                       
Query: 361 cttaagaatcaaaaccagccaactataaactattgcagcactttataattaaatgataac 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 cttaagaatcaaaaccagccaactataaactattgcagcactttataattaaataataac 620

                                                                       
Query: 421 aagtgataatacacattaattgagtttatataatcaaggatggcttactaatatgaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtgataatacacattaattgagtttatataatcaaggatggcttactaatatgaacag 680

                                                                       
Query: 481 ttgtcactatttgcttactaaatttaccctaattattgttagtaaaagtaaaatatttca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgtcactatttgcttactaaatttaccctaattattgttagtaaaagtaaaatatttca 740

                    
Query: 541 catcatacc 549
           |||||||||
Sbjct: 741 catcatacc 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)