Query= MSMg01no543_i05.b1 MSMg01no543_i05.b1 CHROMAT_FILE:
MSMg01no543_i05.b1 PHD_FILE: MSMg01no543_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:55 2005
(313 letters)
>mm_chr12_111973911_111974623
Length = 713
Score = 590 bits (305), Expect = e-173
Identities = 311/313 (99%)
Strand = Plus / Plus
Query: 1 gcagccagtgctcttaactgctgagccatctctccagctcccagtgtaaatcttaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagccagtgctcttaactgctgagccatctctccagctcccagtgtaaatcttaaggca 260
Query: 61 tagtggtcttttacttttttaagacaaagtttcagtatgtggccctttgtgggctgtgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtggtcttttacttttttaagacaaagtttcagtatgtggccctttgtgggctgtgta 320
Query: 121 gtactcaggacagccttaatgtctatctgtctcgccctcctaaatgctgaaattaaagct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtactcaggacagccttaatgtctatctgtctcgccctcctaaatgctgaaattaaagca 380
Query: 181 tatgtcatcatactcagtactatattggtctcatgggaaatttaatattatggttgaagg 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtcatcatactcagtagtatattggtctcatgggaaatttaatattatggttgaagg 440
Query: 241 tcaatatacttttttttcagtttttgctggctgaggtgtcccctcccaaagtatattttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatatacttttttttcagtttttgctggctgaggtgtcccctcccaaagtatattttc 500
Query: 301 ccccattaactag 313
|||||||||||||
Sbjct: 501 ccccattaactag 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_i05.g1 MSMg01no543_i05.g1 CHROMAT_FILE:
MSMg01no543_i05.g1 PHD_FILE: MSMg01no543_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:55 2005
(520 letters)
>mm_chr12_112154836_112155755
Length = 920
Score = 563 bits (291), Expect = e-164
Identities = 343/367 (93%), Gaps = 14/367 (3%)
Strand = Plus / Minus
Query: 1 cactggagaacatcttgatgctgaaatggtaatttcagccctaaagaatggaggttttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cactggagaacatcttgatgctgaaatggtaatttcagccctaaagaatggaggttttgc 298
Query: 61 acttgatgtgatcaaatgggatgtgtgcacacagcccttctgcaggatgaaacactgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acttgatgtgatcaaatgggatgtgtgcacacagcccttctgcaggatgaaacactgagt 238
Query: 121 ctccaagtggtgcacagtaactcatgcaggcaaaacac--tctc--tctctctctctctc 176
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 237 ctccaagtggtgcacagtaactcatgcaggcaaaacacactctcactctctctctctctc 178
Query: 177 tctctatatatatatatatatatatatatatatatatatatatattaagccttttagaag 236
||||| | | | | | | || ||||||||||| | ||| |||||||||||||
Sbjct: 177 tctctctctctctctctctacatatatatataaa-ata---------agccttttagaag 128
Query: 237 cagtggcagtagcctatattgtccataaggcttctgaggactgcttggcaaacaactcat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cagtggcagtagcctatattgtccataaggcttctgaggactgcttggcaaacaactcat 68
Query: 297 aagagaggtggcctaccctgtggcttctgggagctgcgtaatcacgtggggttttcttca 356
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 67 aagagaggtggcctaccctgtggcttctgggagctgcgtaatcaggtggggttttcttca 8
Query: 357 aaagctg 363
|||||||
Sbjct: 7 aaagctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
