Query= MSMg01no543_n05.b1 MSMg01no543_n05.b1 CHROMAT_FILE:
MSMg01no543_n05.b1 PHD_FILE: MSMg01no543_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:18 2005
(574 letters)
>mm_chr12_78830550_78831524
Length = 975
Score = 953 bits (493), Expect = 0.0
Identities = 541/571 (94%), Gaps = 23/571 (4%)
Strand = Plus / Plus
Query: 5 gaattcagtttctaagtttcttggagtaaagttacagaagttttccaggtgacacagtgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gaattcagtttctaagtttcttggagtaaagttacagaagttttccaggt---------- 276
Query: 65 cagttcaacagcgggtcaagatgaatatctctttttgcgctctcactctacagcatagtt 124
|||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct: 277 ------------gggtcaagatgaatatctctttttgcactctctctccacagcatagtt 324
Query: 125 actgcctcattcaatggtcaggtcccaccttgagcttagcaagtagattatgtatactta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgcctcattcaatggtcaggtcccaccttgagcttagcaagtagattatgtatactta 384
Query: 185 ctggttttctgctgatgagattctaataataactatttgttactatctaaaagggcagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggttttctgctgatgagattctaataataactatttgttactatctaaaagggcagaa 444
Query: 245 gtcagagaatattttaatatatatgtatagtaaagccaccttatattctcatatgacaac 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtcagagaatattttaatatatacgtatagtaaagccaccttatattctcatatgacaac 504
Query: 305 tttatttttcagtggttgggatctgagccaagggccttgagccacaccccagcttcacat 364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 tttatttttcagtggttgggatctgagccaagggccttgagccataccccagcttcacat 564
Query: 365 atgacagctcttaaggaggttgccacacataggccacatacctttccctggtacacatca 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgacagctcttaaggaggttgccacacataggccacatacctttccctggtacacatca 624
Query: 425 tttacatgatccatccttaataatcaaagcttattcacc-gattctcgatgatctgatct 483
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 tttacatgatccatccttaataatcaaagcttattcaccagattctcgatgatctgatct 684
Query: 484 tgcaaaatggaccctaccctaactatatgtatataatctacattctgtattagatttatt 543
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcaaaatggactctaccctaactatatgtatataatctacattctgtattagatttatt 744
Query: 544 tatcttcatttctatgtatatggatgttttg 574
|||||||||||||||||||||||||||||||
Sbjct: 745 tatcttcatttctatgtatatggatgttttg 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space: 544260
Effective search space used: 544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_n05.g1 MSMg01no543_n05.g1 CHROMAT_FILE:
MSMg01no543_n05.g1 PHD_FILE: MSMg01no543_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:18 2005
(642 letters)
>mm_chr12_79021440_79022481
Length = 1042
Score = 909 bits (470), Expect = 0.0
Identities = 493/510 (96%), Gaps = 15/510 (2%)
Strand = Plus / Minus
Query: 1 caggcaaagggactgggtctaagtgcaaaggcagttcacaaaagaggagccagtgttatc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 510 caggcaaagggactgggtctaagtgcaaaggcagttcacaaaggaggagccagtgttatc 451
Query: 61 agggggtgcgcagctgctgtctacagggagcctggaataggaagtgtgaaaatccatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agggggtgcgcagctgctgtctacagggagcctggaataggaagtgtgaaaatccatata 391
Query: 121 ggagctgaagaagagaattgatcctgaagaaggtagcacaagccacccctcctctacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggagctgaagaagagaattgatcctgaagaaggtagcacaagccacccctcctctacaat 331
Query: 181 aataaataaaacaaaggtttggatgttcttatgtgacatgcacttccagtaacagtaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aataaataaaacaaaggtttggatgttcttatgtgacatgcacttccagtaacagtaaat 271
Query: 241 ataataaggtttatttcagtgatatgtgtttgtgtacatgtatttcttttccctcagcta 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 270 ataataaggtttatttcagtgatatgtgtttgtgtacatgtatttctattccctcagcta 211
Query: 301 caataatagc---------------aaataaaataaaataaaataaaataaaatgaaggt 345
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 210 caataatagcaaataaaataaaataaaataaaataaaataaaataaaataaaatgaaggt 151
Query: 346 ttgttattattgttgttgttgttgctgttttggggaaaaccttcccaggaatcatgaatc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ttgttattattgttgttgttgttgctgttttggggaaaaccttcccaggaatcatgaatc 91
Query: 406 atgtgctacctttagctgcaagaaagagtgggatgttttggatgcttgtgttctgtagca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 atgtgctacctttagctgcaagaaagagtgggatgttttggatgcttgtgttctgtagca 31
Query: 466 gcagaaaagaaggtgaagtgagggatatat 495
||||||||||||||||||||||||||||||
Sbjct: 30 gcagaaaagaaggtgaagtgagggatatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
