Query= MSMg01no545_b05.b1 MSMg01no545_b05.b1 CHROMAT_FILE:
MSMg01no545_b05.b1 PHD_FILE: MSMg01no545_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:57 2005
(705 letters)
>mm_chr12_84558120_84559226
Length = 1107
Score = 1139 bits (589), Expect = 0.0
Identities = 650/678 (95%), Gaps = 15/678 (2%)
Strand = Plus / Plus
Query: 30 gaattctcaccaaggtagtggtttgagagagaacagtgaagccttagtggtttctgatga 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gaattctcaccaaggtagtggtttgagagagaacagtgaagccttagtggtttctgatga 289
Query: 90 aaagtttcacctccaaagatgagcggtcctcggcagagactctgagatgcttcc-gtgat 148
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||
Sbjct: 290 aaagtttcacctccaaagatgagcagtcctcggcagaaactctgagatgcttcctgttat 349
Query: 149 ctggagaagcagtgtgaacgtgtggacacg-tgacaaaggagtgatgacctgcacaagag 207
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 350 ctggagaagcagtgtgaacgtgtggacacggtgacaaaggagtgatgacctgcacaagag 409
Query: 208 agctacggggtaaaccagagggaacggttcaattccaccataaacttgatcagattagta 267
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 410 agctacggggtaaaccagagggaacggttaaattccaccataaacttgatcagattagta 469
Query: 268 tcacctaggctacttgcgtctgggtgtgtctgtgagggtgtgattagagaagacccaccc 327
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 470 tcacctaggctacttgtgtctgggtgtgtctgtgagggtgtgactagagaagacccaccc 529
Query: 328 tgaatgcaggacaccatcccagagaccaggaagctagactggattaaaaagaagacagca 387
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 530 tgaatgcaggacaccatcccagagaccaggaagccagactggattaaaaagaagacagca 589
Query: 388 agctgagcatgggcgctcttctctctctgcttccaaactatggacacaacatgaccagcc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agctgagcatgggcgctcttctctctctgcttccaaactatggacacaacatgaccagcc 649
Query: 448 atagccaacaaccatgccttcctcaccatgacggactgtgccttcacactgtgagccagt 507
||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 650 atagccaacaaccatgccttcctcaccatgacggactgt------a-------agccagt 696
Query: 508 agaaaatctttcttccttgggttcactttacacagccacgagggggaaaagatgattaat 567
||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 697 agacaatctttcttccttgggttcactttacacagccacgagggggaaacggtgattaat 756
Query: 568 acagaggacgtctcanagaccctccacagttcccaagagaacacagggtgacttagaggc 627
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 757 acagaggacgtctcaaagaccctccacagttcctaagagaacgcagggtgacttagaggc 816
Query: 628 catagtcgcctatcgtagtttaacagtacacatctccctcttcctctcagcttatcccct 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 catagtcgcctatcgtagtttaacagtacacatctccctcttcctctcagcttatcccct 876
Query: 688 gcttgctctgactccaga 705
||||||||||||||||||
Sbjct: 877 gcttgctctgactccaga 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1107
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1097
Effective search space: 762415
Effective search space used: 762415
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no545_b05.g1 MSMg01no545_b05.g1 CHROMAT_FILE:
MSMg01no545_b05.g1 PHD_FILE: MSMg01no545_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:57 2005
(529 letters)
>mm_chr12_84714914_84715842
Length = 929
Score = 942 bits (487), Expect = 0.0
Identities = 518/531 (97%), Gaps = 5/531 (0%)
Strand = Plus / Minus
Query: 4 atcggaaaggacatttgtaaggaaaggacccgcgtaagggtggaaggcgagaactccgac 63
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 652 atcggaaaggacatttgtaaggaaaggacccgagtaagggtggaaggcgagaactctgac 593
Query: 64 accactcagtatttgatatttatcacaagtttcactcatacaaagatttcacttttgaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 accactcagtatttgatatttatcacaagtttcactcatacaaagatttcacttttgaaa 533
Query: 124 atacacacgtccccccaccccctcccagcgtgcctcttagtactgacctgcgtgctcaaa 183
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 532 atacacacgtccccccaccccctcacagcgtgcctcttagtactgacctgcatgctcaca 473
Query: 184 gagtggaaaggacttaagatcaagcccatttgcactgggtcatggctttcttcccctgtc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gagtggaaaggacttaagatcaagcccatttgcactgggtcatggctttcttcccctgtc 413
Query: 244 tcctccattcggtgtaaggcacagacattggccaacttctctatttgttcttagtaagtt 303
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tcctcctttcgatgtaaggcacagacattggccaacttctctatttgttcttagtaagtt 353
Query: 304 tgctttcttgttcctttcgtgtggaccaaagctgttggaagtgaagaacatggcagggaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgctttcttgttcctttcgtgtggaccaaagctgttggaagtgaagaacatggcagggaa 293
Query: 364 gttcacctggaagtcttaccgtgtgtttctttgcttccagaagtccatctggaagaagga 423
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gttcacctggaagtcttaccatgtgtttctttgcttccagaagtccatctggaagaagga 233
Query: 424 aaagcccatttcctctaggagatgagtggtgttttgttttgttttgtttt-----tttgt 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 232 aaagcccatttcctctaggagatgagtggtgttttgttttgttttgttttgtttttttgt 173
Query: 479 ttttttctgagatagggtttctctgtatagccctggctgtcctggaactca 529
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ttttttctgagatagggtttctctgtatagccctggctgtcctggaactca 122
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
