Query= MSMg01no545_l19.b1 MSMg01no545_l19.b1 CHROMAT_FILE:
MSMg01no545_l19.b1 PHD_FILE: MSMg01no545_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:48 2005
(655 letters)
>mm_chr12_38436650_38437704
Length = 1055
Score = 611 bits (316), Expect = e-179
Identities = 319/320 (99%)
Strand = Plus / Minus
Query: 336 gtatcagcgttcatgcattctttattatctgttcctctgattatggatatgatatgacca 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 gtatcagcgttcatgcattctttattatctgttcctctgattatggatatgatatgacca 996
Query: 396 actgattcaaactcctgctgcaatgatcctttcaaggtgtattttacctcgaacagtgag 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 actgattcaaactcctgctgcaatgatcctttcaaggtgtattttacctcgaacagtgag 936
Query: 456 ctaaaacaaatctcttctactgtacattgattgtgtcagagtatttattatatatagcaa 515
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 935 ctaaaacaaatctcttctactgtacattgattgtgtcagagtatttagtatatatagcaa 876
Query: 516 ggacagtagaagctaaaatagaacctttattcatactgtcagaaatagcagaagtgttta 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ggacagtagaagctaaaatagaacctttattcatactgtcagaaatagcagaagtgttta 816
Query: 576 aaatgttttatttgagacatatatgaaaattggcataatcacttggacatttataacttt 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aaatgttttatttgagacatatatgaaaattggcataatcacttggacatttataacttt 756
Query: 636 cctcctggcagggcactatc 655
||||||||||||||||||||
Sbjct: 755 cctcctggcagggcactatc 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_l19.g1 MSMg01no545_l19.g1 CHROMAT_FILE:
MSMg01no545_l19.g1 PHD_FILE: MSMg01no545_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:48 2005
(599 letters)
>mm_chr12_38267731_38268733
Length = 1003
Score = 1123 bits (581), Expect = 0.0
Identities = 596/603 (98%), Gaps = 4/603 (0%)
Strand = Plus / Plus
Query: 1 agtaatttatgcaattttgattggaccactgcataaatatcactgggggggg----cttt 56
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 agtaatttatgcaattttgattggaccactgcataaatatcactggggggggggggcttt 260
Query: 57 cacttattattgtttctcaaattcacatccagatccatgattgtcctatttttcccctaa 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttattattgtttctcaaattcacatccagatccatgattgtcctatttttcccctaa 320
Query: 117 aagagaatgctcatagataatgcacctggttaagcctattatggggaatcacagaggaat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagaatgctcatagataatgcacctggttaagcctattatggggaatcacagaggaat 380
Query: 177 actgtaatttcagctttggtagataattatcatgccaaaatatgaataaatgccaaataa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtaatttcagctttggtagataattatcatgccaaaatatgaataaatgccaaataa 440
Query: 237 tttttagtgatcatttatgtttcctcgtgcccttttttgtctttgtggtcatgcctcctt 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tttttagtgatcatttatgtttcctcgtgcccttgtttgtctttgtggtcatgcctcctt 500
Query: 297 cttctctttctactgacttgctctttcccatttgtgtcctcacaaagttgtagcatgaga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttctctttctactgacttgctctttcccatttgtgtcctcacaaagttgtagcatgaga 560
Query: 357 ttagacctcagacttggtagttgaatttctctgaatgctttatttgaccctttcagggca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagacctcagacttggtagttgaatttctctgaatgctttatttgaccctttcagggca 620
Query: 417 gttttgcctgactccttctacctttccctgcctcttcctcatggtgcccaattccattgt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttgcctgactccttctacctttccctgcctcttcctcatggtgcccaattccattgt 680
Query: 477 tctccattttccaaggaaaaagctctttcttcagctctattgaattattttttagtcaca 536
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 tttccattttccaaggaaaaagctctttcttcagctctattgaattattttttagtctca 740
Query: 537 ttttctctatggatatttgtatgttcaagctcagcatgaggtcgggaagtcttttgtcaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttctctatggatatttgtatgttcaagctcagcatgaggtcgggaagtcttttgtcaa 800
Query: 597 cat 599
|||
Sbjct: 801 cat 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1003
Length adjustment: 10
Effective length of query: 589
Effective length of database: 993
Effective search space: 584877
Effective search space used: 584877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
