BAC Information

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BAC

Clone NameMSMg01-546B08
Chromosome12 (Build37)
Map Location 111,327,496 - 111,495,662
singlet/doubletdoublet
Overlap geneLOC100040746, 3110009F21Rik
Upstream geneLOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509
Downstream geneDio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546B08.T7 (MSMg01no546_b08.b1)MSMg01-546B08.TJ (MSMg01no546_b08.g1)
ACCAG610992AG610993
length746749
length of high quality
(start - end)		655 (41 - 695)598 (70 - 667)
definitionCHROMAT_FILE: MSMg01no546_b08.b1 PHD_FILE: MSMg01no546_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:15 2005CHROMAT_FILE: MSMg01no546_b08.g1 PHD_FILE: MSMg01no546_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,327,496 - 111,328,146)(111,495,065 - 111,495,662)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTGATATATGTGTGTCAGTCACCATGCTGGGTGCTGAGAACACCCAGGA
GCCAAGGCCAGACCCTGGAACAGAACACGCAGAACCTTCTGGAAATGAAA
TGTCAAGAAAGTAGGCAAGCATAGGGAGTGGGTTACAAGTGTTCAGGAGA
CTCTGGGTACAGAGAGAAGGCGTGGAGGTTGGGGGATAAAGAAGGATCTA
TGAGGGCATAAACAGATGTCCAGTGGGAGAGAAAGGAGCTCTTTAGTCCG
GTACCCAGATGTTATGAGGTCTACCAGTCCTGAAAGCCTTGGAACATCTG
GGGCCACACCTCTGTGACCACTTTTGAAGAAATCCATGCTTTTTGAAGGA
ACCCGCAAGAGGAGTGGGCAGGAAGCCCCACACCGTTTCTGTCACAACCC
CACGCATGTGCACATGTGAGAGAGAAGGGCTCAGAGCTGAGCTCTTTGTC
TGTGGAAACCCAGCCAGACGGCTGCCAACTCAGCGTCAGGTGCTCAGTGA
GTCTAAGAGGAGGCAGCTTTGTGCCAAAGGTGGGATTTAATTTGCCTAAA
ACATAAATCACTATTAAGCATCACCGAGCTATTAGGGATCTATTTAGTTG
AAATAATCAATCTTTGAATGCTGGTGTAGGTTCTTCCATGCCTCAGTTGG
GGCATGGAAGTCACTGTGGCTAGCGGTTCTCTTTGTTGGAAAGTGC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGACAGAGTCAATTACCCCAGCCCACAGC
ACCCTGGAGACAGGAGGTGCAGGTACGGCCAGGACAGGAAAGGCAGGTCT
GGCTGGGTTGGGAAGGCTATTTCCCTTCTGAAGACCCAGGGTTGGAAGGG
AAAAGGGACTTGGGGTCCAGGAGCACCACGGTGAAGGAAGAGCTTTGACG
GATGATGAGGAGCCTGTAGTACAGCAAGGTTGAAAGAGGGGATTCTGGGA
TACAGAGGTAATATGTAGGTGTAGATAGAAGACCTCAGAACACAAGGGAA
CGAATCCCAGCCAGGGTTCCCTGCTCAGATCACTCAAGGTTTGGGCACTT
CTGTAGGTGGGGACGGCTGGCTGAGGAGCAAGCGATGATGAGCAGTGTGG
CTTTGGGTAGAGGCTTGCTCCTTGGTGAGTGCCTGCCCAGGTGTCACTGT
GGTCTTAGCTTATAGGCTGAGGCTTTTCTCCAGACCTGAGTCTCTCTGGT
ACAGTGGCCCTGGCCATATGGAGTGGGCTCAGCAACCACCGGGTGCCTGG
GTCTTCTCCTTTGCCATTCTAACTTGGACCTTCTGGTGTTTATGGTCGGC
ACGCAGCGACTTCCTGTTTTTGAAGAGAAGGGGATTAGACACACTTATTA
AAACGCCTTTGAAAGGCATCAAAAGACTTTCTGTACGTCAAATGACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_b08.b1 MSMg01no546_b08.b1 CHROMAT_FILE:
MSMg01no546_b08.b1 PHD_FILE: MSMg01no546_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:15 2005
         (655 letters)



>mm_chr12_111327292_111328346
          Length = 1055

 Score = 1197 bits (619), Expect = 0.0
 Identities = 643/651 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgatatatgtgtgtcagtcaccatgctgggtgctgagaacacccaggagcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgatatatgtgtgtcagtcaccatgctgggtgctgagaacacccaggagcca 264

                                                                       
Query: 65  aggccagaccctggaacagaacacgcagaaccttctggaaatgaaatgtcaagaaagtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 aggccagaccctggaacagaacacgcagaaccttctggaaatgaaatgtcaaggaagtag 324

                                                                       
Query: 125 gcaagcatagggagtgggttacaagtgttcaggagactctgggtacagagagaaggcgtg 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaagcatagggagtgtgttacaagtgttcaggagactctgggtacagagagaaggcgtg 384

                                                                       
Query: 185 gaggttgggggataaagaaggatctatgagggcataaacagatgtccagtgggagagaaa 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 gaggttgggggataaagaaggatctataagggcataaacagatgtccagtgggagagaaa 444

                                                                       
Query: 245 ggagctctttagtccggtacccagatgttatgaggtctaccagtcctgaaagccttggaa 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggggctctttagtccggtacccagatgttatgaggtctaccagtcctgaaagccttggaa 504

                                                                       
Query: 305 catctggggccacacctctgtgaccacttttgaagaaatccatgctttttgaaggaaccc 364
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catctggggccacatctctgtgaccacttttgaagaaatccatgctttttgaaggaaccc 564

                                                                       
Query: 365 gcaagaggagtgggcaggaagccccacaccgtttctgtcacaaccccacgcatgtgcaca 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaagaggagtgggcaggaagccccacaccgtttctgtcacaaccccacgcatgtgcaca 624

                                                                       
Query: 425 tgtgagagagaagggctcagagctgagctctttgtctgtggaaacccagccagacggctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtgagagagaagggctcagagctgagctctttgtctgtggaaacccagccagacggctg 684

                                                                       
Query: 485 ccaactcagcgtcaggtgctcagtgagtctaagaggaggcagctttgtgccaaaggtggg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccaactcagcgtcaggtgctcagtgagtctaagaggaggcagctttgtgccaaaggtggg 744

                                                                       
Query: 545 atttaatttgcctaaaacataaatcactattaagcatcaccgagctattagggatctatt 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 745 atttaatttgcctaaaacataaatcactattaagcatcaccgagctattagggatccatt 804

                                                              
Query: 605 tagttgaaataatcaatctttgaatgctggtgtaggttcttccatgcctca 655
           | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttgttgaaataatcaatctttgaatgctggtgtaggttcttccatgcctca 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no546_b08.g1 MSMg01no546_b08.g1 CHROMAT_FILE:
MSMg01no546_b08.g1 PHD_FILE: MSMg01no546_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:15 2005
         (598 letters)



>mm_chr12_111494865_111495862
          Length = 998

 Score = 1125 bits (582), Expect = 0.0
 Identities = 594/598 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagacagagtcaattaccccagcccacagcaccctggagacaggaggtgcaggtacggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctagacagagtcaattaccccagcccacagcaccctggagacaggaggtgcaggtacggc 739

                                                                       
Query: 61  caggacaggaaaggcaggtctggctgggttgggaaggctatttcccttctgaagacccag 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 738 caggacaggaaaggcaggtctggctgggttgggaaggctgtttcccttctgaagacccag 679

                                                                       
Query: 121 ggttggaagggaaaagggacttggggtccaggagcaccacggtgaaggaagagctttgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggttggaagggaaaagggacttggggtccaggagcaccacggtgaaggaagagctttgac 619

                                                                       
Query: 181 ggatgatgaggagcctgtagtacagcaaggttgaaagaggggattctgggatacagaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggatgatgaggagcctgtagtacagcaaggttgaaagaggggattctgggatacagaggt 559

                                                                       
Query: 241 aatatgtaggtgtagatagaagacctcagaacacaagggaacgaatcccagccagggttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aatatgtaggtgtagatagaagacctcagaacacaagggaacgaatcccagccagggttc 499

                                                                       
Query: 301 cctgctcagatcactcaaggtttgggcacttctgtaggtggggacggctggctgaggagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cctgctcagatcactcaaggtttgggcacttctgtaggtggggacggctggctgaggagc 439

                                                                       
Query: 361 aagcgatgatgagcagtgtggctttgggtagaggcttgctccttggtgagtgcctgccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagcgatgatgagcagtgtggctttgggtagaggcttgctccttggtgagtgcctgccca 379

                                                                       
Query: 421 ggtgtcactgtggtcttagcttataggctgaggcttttctccagacctgagtctctctgg 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 378 ggtgtcactgtggtcttagctcataggctgaggcttttctccagacctgggtctctctgg 319

                                                                       
Query: 481 tacagtggccctggccatatggagtgggctcagcaaccaccgggtgcctgggtcttctcc 540
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 318 tacagtggccctggccatatggggtgggctcagcaaccaccgggtgcctgggtcttctcc 259

                                                                     
Query: 541 tttgccattctaacttggaccttctggtgtttatggtcggcacgcagcgacttcctgt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttgccattctaacttggaccttctggtgtttatggtcggcacgcagcgacttcctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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