BAC Information

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BAC

Clone NameMSMg01-546B17
Chromosome12 (Build37)
Map Location 81,764,120 - 81,764,679
singlet/doubletsinglet
Overlap geneSlc39a9
Upstream geneRad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh
Downstream gene3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546B17.T7 (MSMg01no546_b17.b1)MSMg01-546B17.TJ (MSMg01no546_b17.g1)
ACCAG611010AG611011
length755461
length of high quality
(start - end)
565 (36 - 600)40 (121 - 160)
definitionCHROMAT_FILE: MSMg01no546_b17.b1 PHD_FILE: MSMg01no546_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:17 2005CHROMAT_FILE: MSMg01no546_b17.g1 PHD_FILE: MSMg01no546_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCAA
TTTGTGCAGACTGGGTGACCAGAGAGCTGCAGGGATCCTCCTGCCTCAGC
TCCTCAGTGCTGGGAAAGGGGCACACACTACCTCGCCTGGCTTTTTACAT
AAGTACTTGGGATGAAACTCAGAGAGTTGAAAATTACTCTGGAAGCAGAC
ACTGAACTAATATTTTCTTTCTTTAAGCGTTTGCTAGAATTTACTGGCAA
ATTTATCATTTGGGCAGGTGCCTTCTGTGGTGTTTGTATTAGTAATTTTT
CTCATTACTCTAACCAAATTCCTGAGGAAAACCAACTAAGGGAAGAGAGA
TATTTCGGCTCACAGTTTAAAGGGGTCATGTCCATAGTGGCAGAGAAAGC
CTGGGTGCAGGAGTGGCTCAAAGCTATGGTGGCAGGCATGTGGGATGGTT
GGTAACTTGTATTGGTAGTTAGGAAGTGAGAGACTCAGGCAGAGGTAGAT
CTAACCCTTAAGGCCTGAACCAGCAAGCCTGGTTATCTATTTTTCAGTAA
AGACCTACCTCTTTTTTTTTTTTTTAAGGCTTATATATTTCATATATGTG
AGTACATTGTTGCTGTTTTCTGACCACCAGAAGAAGCTATTGGATCCCCA
TTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGGATTGAACTCAAGA
AGAGCAGTCAGTGCTCTTAACTGCTGAGGTATCTCTCTAGCCCCAAGACC
TACTT
GGAGCGGGGCGCGGTTCATTAGGCCTATAAGTCCGCGATTCGGCGCGGCA
TATTGATTTCAAGCTGACTACTAGGGCCTTGTCTCAATAAAAAATAAAGG
ACTCTATACAGAATAATTCAGAATAAACAGAATATGCTCAAACCTCAAAA
GATGCTAATAAAAAAATGGGATTTTTAGATACATTAACAAACTATTTTTA
AAAAGGTATTGAAAAATGATGCCAAAATCTCCTGAAATAAATATATATGT
GGGGGGGGGTATGGGGAGGTAAAAAAGGGANAAAAAAAAAAAAACAAAAT
AAAAAATAAAAATTTTTTTTATATAATTTTTTATTTTTAAAATTTTTTAT
TTTATAATAAAAATTTTTTTTTATAATTTATTTTTTATTTTTTTATTAAA
TTTTTTTTTATAATTTTTTTTTTTTTAAAATATATTTTTATTTTTTATAT
ATATTTATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_b17.b1 MSMg01no546_b17.b1 CHROMAT_FILE:
MSMg01no546_b17.b1 PHD_FILE: MSMg01no546_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:17 2005
         (565 letters)



>mm_chr12_81763917_81764880
          Length = 964

 Score = 1035 bits (535), Expect = 0.0
 Identities = 556/563 (98%), Gaps = 4/563 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccaatttgtgc-agactgggtgaccagagagctgcagggatcctcctgcctc 62
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccaatttg-gcaagactgggtgaccagagagctgcagggatcctcctgcctc 262

                                                                       
Query: 63  agctcctcagtgctgggaaaggggcacacactacctcgcctggctttttacataagtact 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agctcctcagtgctgggaaaggggcacacactacctcgcctggctttttacataagtact 322

                                                                       
Query: 123 tgggatgaaactcagagagttgaaaattactctggaagcagacactgaactaatattttc 182
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 323 tgggatgaaactcagagagttgaaaattactctggaagcagatactgaactaatatttt- 381

                                                                       
Query: 183 tttctttaagcgtttgctagaatttactggcaaatttatcatttgggcaggtgccttctg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttctttaagcgtttgctagaatttactggcaaatttatcatttgggcaggtgccttctg 441

                                                                       
Query: 243 tggtgtttgtattagtaatttttctcattactctaaccaaattcctgaggaaaaccaact 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggtgtttgtattagtaatttttctcattactctaaccaaattcctgaggaaaaccaact 501

                                                                       
Query: 303 aagggaagagagatatttcggctcacagtttaaaggggtcatgtccatagtggcagagaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagggaagagagatatttcggctcacagtttaaaggggtcatgtccatagtggcagagaa 561

                                                                       
Query: 363 agcctgggtgcaggagtggctcaaagctatggtggcaggcatgtgggatggttggtaact 422
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 562 agcctgggtgcaggagtggctcaaggctatggtggcaggcatgtgggatggttggtaact 621

                                                                       
Query: 423 tgtattggtagttaggaagtgagagactcaggcagaggtagatctaacccttaaggcctg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgtattggtagttaggaagtgagagactcaggcagaggtagatctaacccttaaggcctg 681

                                                                       
Query: 483 aaccagcaagcctggttatctatttttcagtaaagacctacctcttttttttttttttaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 682 aaccagcaagcctggttatctatttttcagtaaagacctacctcttttttttttttt-aa 740

                                  
Query: 543 ggcttatatatttcatatatgtg 565
           || ||||||||||||||||||||
Sbjct: 741 ggtttatatatttcatatatgtg 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space:   529470
Effective search space used:   529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)