Query= MSMg01no546_c21.b1 MSMg01no546_c21.b1 CHROMAT_FILE:
MSMg01no546_c21.b1 PHD_FILE: MSMg01no546_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:23 2005
(522 letters)
>mm_chr12_12267714_12268636
Length = 923
Score = 938 bits (485), Expect = 0.0
Identities = 509/517 (98%), Gaps = 3/517 (0%)
Strand = Plus / Plus
Query: 8 gaattcttgccaaatctgaaccaaacactctactgctaagcagttcctgggagcctgtca 67
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcttgccaaaactgaaccaaacactctactgctaagcagttcctgggagcctgtca 267
Query: 68 gaaacacagactgtca-gagcctcaggagacttaggcggagtaagtttgtcatggggact 126
||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 268 gaaacgcagactatcaagagcctcaggagacttaggcggagtaaatttgtcatggggact 327
Query: 127 catactggcctcaagcaaggggatagagcaatgctctccctgaagcaccttccactgttg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 catactggcctcaagcaaggggatagagcaatgctctccctgaagcaccttccactgttg 387
Query: 187 gagccccaggcttttcctcctgttcccaacccacaaactcactacccaaagaagccatgg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gagccccaggcttttcctcctgttcccaacccacaaactcactacccaaagaagccatgg 447
Query: 247 ctgtcagcacaaggcctgacacactgtgaaggtttaatactgtataaattgtataatgat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctgtcagcacaaggcctgacacactgtgaaggtttaatactgtataaattgtataatgat 507
Query: 307 cttctctggttggctgtctgaggaaaa-gagcagccaacctaggtatctgcaaggcaaac 365
|||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 508 cttctctggttggctgactg-ggaaaaagagcagccaacctaggtatctgcaaggcaaac 566
Query: 366 acacatacaggggctctgactcacaacctgtttggcacagctcggtcctctgggcttccg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 acacatacaggggctctgactcacaacctgtttggcacagctcggtcctctgggcttccg 626
Query: 426 gaatctccctttctgtacaaaacctcctcggcagatgttttaaaacaatgatctgtgaca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaatctccctttctgtacaaaacctcctcggcagatgttttaaaacaatgatctgtgaca 686
Query: 486 atgagagctgtaagctactttctccttacctcgcaga 522
|||||||||||||||||||||||||||||||||||||
Sbjct: 687 atgagagctgtaagctactttctccttacctcgcaga 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_c21.g1 MSMg01no546_c21.g1 CHROMAT_FILE:
MSMg01no546_c21.g1 PHD_FILE: MSMg01no546_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:23 2005
(378 letters)
>mm_chr12_12432633_12433410
Length = 778
Score = 669 bits (346), Expect = 0.0
Identities = 370/378 (97%)
Strand = Plus / Minus
Query: 1 tatgagaaagcatagcaggcactgggatagtgttgtggttgtgcccctagagactgagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tatgagaaagcatagcaggcactgggatagtgttgtggttgtgcccctagagactgagga 519
Query: 61 ggggtctactgtcgactctgtgattgtcatgctgtgtggtctcaggttactgatttttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggggtctactgtcgactctgtgattgtcatgctgtgtggtctcaggttactgatttttcc 459
Query: 121 ctcaccaagtccaggttgtcttctttagaaagccatttccatcatttacttgatggcaac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 458 ctcaccaagtccaggttgtcttctttagaaagccatttccatcatttacttggtggcaac 399
Query: 181 acccttgagacactgactcctgggctggctcagtaaaataattatttagaggcaaatgca 240
||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 398 acccttgggacactgactccttggctggctcagtaaaatcattatttagaggcaaatgca 339
Query: 241 ggtggcccactgagcccttttattcttttttttctcatagacatctgttcttctcctttc 300
|||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 338 ggtggcccgctgagcccctttattcttttttttctcatagacatctgttctcctcctttc 279
Query: 301 tcaagcatctataaagtgtgggacactgaagcaaaatgtgtctgggaagagtctcaagca 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 278 tcaagcatctataaagtgtgggacactgaagcaaaatgtgtctgtgaagagtctcaagca 219
Query: 361 aggatgaggaaaacttgg 378
||||||||||||||||||
Sbjct: 218 aggatgaggaaaacttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space: 283761
Effective search space used: 283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
