Query= MSMg01no546_l21.b1 MSMg01no546_l21.b1 CHROMAT_FILE:
MSMg01no546_l21.b1 PHD_FILE: MSMg01no546_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:08 2005
(538 letters)
>mm_chr12_106762847_106763784
Length = 938
Score = 951 bits (492), Expect = 0.0
Identities = 518/534 (97%), Gaps = 12/534 (2%)
Strand = Plus / Minus
Query: 5 gaattctccgggcatatggatgcgcagaacgccattatacatgcagaaagcttaggaact 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gaattctccgggcatagggatgcgcagaacgccattatacatgcagaaagcttaggaact 708
Query: 65 ctttattgtaaattgcacaaccgactcttacagaaagcccttggcaggccacagtcgacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ctttattgtaaattgcacaaccgactcttacagaaagcccttggcaggccacagtcgacc 648
Query: 125 gagggctgcagcagacaaggcaagacagctctgccacgaactgtgtttatgttttcgttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gagggctgcagcagacaaggcaagacagctctgccacgaactgtgtttatgttttcgttt 588
Query: 185 acattcatgagtcagaggaaatgaggaagactggaacagctccctggattaggtgtcaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 acattcatgagtcagaggaaatgaggaagactggaacagctccctggattaggtgtcaga 528
Query: 245 ctttgattactggggcctaggttttttcattttcattttttatttttttatatgccatag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctttgattactggggcctaggttttttcattttcattttttatttttttatatgccatag 468
Query: 305 catctacagatgtgctcacaggtacttgaaaacttgaagtttcgctgcattttcctcact 364
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 467 catctacagatgtgctcacaggtacttgaaaactcgaagtttcgctgcattttcctcact 408
Query: 365 gatttctttttcttttcttttctttttcttttttttttttttttttttgggtttccgaga 424
|||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 407 gatttctttttctttt------------ttttttttttttttttttttggttttccgaga 360
Query: 425 cagggcttctctgtagccctggctgtcctggaactcactttgtagaccaggctggctttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cagggcttctctgtagccctggctgtcctggaactcactttgtagaccaggctggctttg 300
Query: 485 aactcagaaatctgcctgcctctgcctcccaagtgctgggcttaaaggcatgcg 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 299 aactcagaaatctgcctgcctctgcctcccaagtgctgggcttaaaggcgtgcg 246
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_l21.g1 MSMg01no546_l21.g1 CHROMAT_FILE:
MSMg01no546_l21.g1 PHD_FILE: MSMg01no546_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:08 2005
(659 letters)
>mm_chr12_106656254_106657312
Length = 1059
Score = 1251 bits (647), Expect = 0.0
Identities = 656/659 (99%)
Strand = Plus / Plus
Query: 1 caagaggatggctggagagtcatgaagacccaggaaggaaaggtgactgtatggggagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaggatggctggagagtcatgaagacccaggaaggaaaggtgactgtatggggagag 260
Query: 61 agaggaaaggggagaaagcaagaaggcaagagagcaagagagagcagagggggcaagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggaaaggggagaaagcaagaaggcaagagagcaagagagagcagagggggcaagcag 320
Query: 121 ctgttgccaggtaacagtggggcagagcctagatgaaatgccaacagtgactcctgcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttgccaggtaacagtggggcagagcctagatgaaatgccaacagtgactcctgcaaa 380
Query: 181 attcccagctaaggcaggagggagatgagcctggccctgtgttcccagacccactgtcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcccagctaaggcaggagggagatgagcctggccctgtgttcccagacccactgtcta 440
Query: 241 ttgttttttgtggctgtatcaacagctagggaggcatgacctgagctccagggcacggtg 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 ttgttttttgtggctgtatcaacagctagggaggcctgacctgagctccagggcacggtg 500
Query: 301 ggaaactggaggaccctgagatagaatatgcccctcaggaccaggacaacagagaccacc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ggaaactggaggaccctgagatagaatatgcccctcatgaccaggacaacagagaccacc 560
Query: 361 atgttgcaggtggggatgtaggatttccctggcaagggaccatgagaacacagggtttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgttgcaggtggggatgtaggatttccctggcaagggaccatgagaacacagggtttgg 620
Query: 421 gaacacaaaaatcctcttcgtactctttgagaaactgggtcagcttgctaaccaagcacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaacacaaaaatcctcttcgtactctttgagaaactgggtcagcttgctaaccaagcacc 680
Query: 481 ttctttctctggcgttttctacctggaatgcatttcacgcaccacagacaaccttactgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctttctctggcgttttctacctggaatgcatttcacgcaccacagacaaccttactgc 740
Query: 541 ccacaggggaccgagcggtctaagaacgcaccttaaagctaatgaccaaaattaggcgac 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccacaggggaccgagcagtctaagaacgcaccttaaagctaatgaccaaaattaggcgac 800
Query: 601 attttaagttagggggaatcaggggcgagtgactgcagtcccttccctgaggggctgga 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attttaagttagggggaatcaggggcgagtgactgcagtcccttccctgaggggctgga 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
