BAC Information

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BAC

Clone NameMSMg01-547B10
Chromosome12 (Build37)
Map Location 95,623,097 - 95,623,515
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547B10.T7 (MSMg01no547_b10.b1)MSMg01-547B10.TJ (MSMg01no547_b10.g1)
ACCAG611759AG611760
length748752
length of high quality
(start - end)
407 (38 - 444)459 (65 - 523)
definitionCHROMAT_FILE: MSMg01no547_b10.b1 PHD_FILE: MSMg01no547_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:37 2005CHROMAT_FILE: MSMg01no547_b10.g1 PHD_FILE: MSMg01no547_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAT
AGTTAACTTTTCTTTATAAAAGAGAAAATCTGTCAGGATCTAACTTTGGC
ACCAAAAACTCGGATTGTTCTCTGTGATAGCTGGGGTTAATCGTCAATTG
GAGAGGATACAATGCCACTAGGAAAATAGGCCTTGGGTTTTGGGGAATTT
GTGGGTTTTGTTGTTGTTTTGTTTTGTTGTTTTGTTTTGCTTTTGTTTTG
TTCTTACTTTATTTGAGATGGGAAGACTTACTCATTGTGGGTAGCACTGC
TGCCTGGCTGGGATCCTCAACAATATAAATGTGGAAACTGAGATGCATGT
ATTCCACTCTGCTTCCTGATGATTGATGTGATGTCATCAGTTGCTTTGAA
CTCTTTACACCTTGATTTCGTCACCTTGATGGGCTGTTCAGTACAACTGG
GAGGCAGGTTGCTTTTGTCAGTCTTGTATCCCAGCACCAGGTAAGGTAAA
AACACTATGACACTGCTCTTGCGTTATTAAGTGTGTTATACTTCCTTTAC
TAAGTGAGTATCTCATGTCTCATTATGGTATGTATTGTATCCATATATAT
ACATGTATGTATAAAATTCAACTTTATTTTCATTCATCCCTCTGCGCCAT
TCCTTTCCCTTACCCCCCATCTTTTCTATTCAGCTCTCCCCGCCAATTAC
TTCTCCTTTTACCCTCACTCATGCCCCCGCTTTCTCTTCACGTGTTAC
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTCTGTGACTCATGGTATCTCTACTTGTTCAAGGC
TCATTTATTTCTTGTCTTTAGTTACATTATTTGGTCATTTCCCAATATTT
TTATGTATTTAAGTTTATCGCTGTTTTCTCCCAGTGAATTCACACACACA
CACACACCAAAACACACCTTTCATTTTTCTACCAAAGCAGATGTGTGAGT
TGCAGGTTGAATAGTACTGAGACCTTAGTCAAAAGAGACTGGCGTGAGCT
GGGTGTGGTGGCCACACCGTTAATCCCAGGATTTGGGAGGCAGAGGCAGG
CAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC
AGCCAAGGCTATACAGAGAAACCCTGTCTCGAAAAACCAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGACTGGGGTGAGATGTATTGGGGGGGGAGTANAANANNNNT
TANTCTTCTCNNTTTTTTGGGGAATTTCCTAAAACAGTTTTATTGATTCA
ATTAAGGTAAACAAAGTCTTCATTGTACAGTGGACTTATGCTGCTCGTAA
ACTTTGAAAGTACAAAATGAGCATTTTCTCTACTTTCGACGATTTTGCTT
AATTAAACATCTGAGGTAATCTTAGTATGTCCATATACACTTCTGTATAT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_b10.g1 MSMg01no547_b10.g1 CHROMAT_FILE:
MSMg01no547_b10.g1 PHD_FILE: MSMg01no547_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:37 2005
         (459 letters)



>mm_chr12_95623084_95623942
          Length = 859

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctgtgactcatggtatctctacttgttcaaggctcatttatttcttgtctttagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agtctgtgactcatggtatctctacttgttcaaggctcatttatttcttgtctttagtta 373

                                                                       
Query: 61  cattatttggtcatttcccaatatttttatgtatttaagtttatcgctgttttctcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cattatttggtcatttcccaatatttttatgtatttaagtttatcgctgttttctcccag 313

                                                                       
Query: 121 tgaattcacacacacacacacaccaaaacacacctttcatttttctaccaaagcagatgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 312 tgaattcacacacacacacacaccaaaacacacctttcatttttctacaaaagcagatgt 253

                                                                       
Query: 181 gtgagttgcaggttgaatagtactgagaccttagtcaaaagagactggcgtgagctgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gtgagttgcaggttgaatagtactgagaccttagtcaaaagagactggcgtgagctgggt 193

                                                                       
Query: 241 gtggtggccacaccgttaatcccaggatttgggaggcagaggcaggcagatttctgagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gtggtggccacaccgttaatcccaggatttgggaggcagaggcaggcagatttctgagtt 133

                                                                       
Query: 301 tgaggccagcctggtctacaaagtgagttccaggacagccaaggctatacagagaaaccc 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tgaggtcagcctggtctacaaagtgagttccaggacagccaaggctatacagagaaaccc 73

                                                                      
Query: 361 tgtctcgaaaaaccagagagagagagagagagagagagagagagagagagagagagaga 419
           |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  tgtctcaaaaaaccaaagagagagagagagagagagagagagagagagagagagagaga 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)