BAC Information

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BAC

Clone NameB6Ng01-002K21
Chromosome13 (Build37)
Map Location 83,078,465 - 83,177,935
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC238756, LOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002K21.bB6Ng01-002K21.g
ACCDH840632DH840633
length1,1361,179
definitionDH840632|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K21, 5' end.DH840633|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,078,465 - 83,079,618)(83,176,756 - 83,177,935)
sequence
gaattccagccccagtctactcttattccacaataccataaagacttcag
taaagacgtgagctcactttgacttagtaagccaaatcttggacaagatt
ctgtatggtagagagcagtaacttagctgtgctcacattcagaagactat
gagggccaatggcttctctgtgatcagaggggatcaaatggattgatttc
tgtccctgtcagtgagcaatcactattttagtctgcctatcccagcattt
ttatcctatgggtataaagtagtggtatctaatttggtaagaggcaaaaa
ggagaaagtctgtgtacatacatacacgctgtacccactgatctctgagc
acacatcacagtagcaagcagttcctaaacttgcattgctcagtctgtga
cagcaattcattgaagctcttcagaatttctctacaggagaatttgctgg
agaaaatttatgacacaaaacttccagcttaaagacagttttgtttattt
gaatgtgataatggtataagatttgtgttatgcaaaaacaaacacactca
aaagtaaaaaaaaaaaaagataaataactagtaatatgagataatgttaa
gatatagcaaagagatactaattagctagtttgattctatcaactattaa
aatgattttcaatattttatcatacaaacatattattaagttttgaagta
aaagaaaaaatgctttaaagattcactgtttcatgacctataatagattt
tcctaaacactttagtcattggtaatattttatttctctagtttctttaa
aatagatccaggatcacatccttcttccctgaacatttttacccttttaa
agatgatctttaccctacagtgttcatttgtcagaaatgtactaacaaat
gctaagatgctatggaatggtgataattttcccacgtgttcttgaatcat
tttgctccttttcttttctgagcagtgacattccttcacattttcatctc
tcgtctatgcttctctgctctgagagtctctataaagcatgatcatttct
atcatctctgttatgtttccaggcatgaaataaactgcagagcgctgcaa
ctggtgtggactgggttgcaggatgaaagctgatgg
gaattcaatgatttgtataatgaagtaacaggaaccatttttgcctccct
caagaatcaaacctgtgttattcctttgaggcagcaattgtgaaatttgg
gtttgctttaactattttggtcatcagtgcagtcggaatacatttgttta
ttggcccacctttaaaacagagagatttgaaaatgattgttttcaggagg
aggaattttgtatcctaaaagtcctttccccactttttctattcaaaacc
ataaaacagttggagagatgccgcagatgttcagagtgtgtactgctctt
gcaggggctctgagtttgtatctgagcatgtgtgtcaggggggtaacaaa
tgcatagaactctgacttcaggacttctggtaggttcttctggtttcctt
aggtattgaagtattgaattcactttaagtatctacatacatacatacat
acacacacacacacacacacacacacacacacacacacacaaacacacac
acacacacaattcatcctattacagttagttaatatgtaaactatattgc
tagacataaaaaatgctctttatcaaaaaatattaaaaataaataaatgt
aaatttaaaacgggaactagtaaaaataaatgcttacagaacaaaatagc
taaaactagatcctcttgtctttcaaatgttctaggtttcagactttttt
cctttatttttctttttttttccattcctttatttttcttgaagaagaaa
atagattaattttaaattaattttaaaatgtttacattttagtgatttta
actatattttatgacaccacaccacaaaggttcactagaacaaattattt
tgtatcttaaataacactctggccctaaattaagatacatgttattttat
tagtgttgtacaaaatcattaaaacttagtgtttgctacaaaccacaatg
ataagaccttctatgagactttatgttctgacccttaaaaagactcagga
gtttatgttcttctaaagaagttcatattcatctatgcaccttaaactgc
aatgtgttattttgaataaaataagtcaccagttaggaacagagttaagg
aaactctcagaattcattgtttccaatttcaactgggacgatttcctaca
gaaccccttttatgttccattccatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_83078465_83079618
seq2: B6Ng01-002K21.b_48_1183

seq1  GAATTCCAGCCCCAGTCTACTCTTATTCCACAATACCATAAAGACTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCCCAGTCTACTCTTATTCCACAATACCATAAAGACTTCAG  50

seq1  TAAAGACGTGAGCTCACTTTGACTTAGTAAGCCAAATCTTGGACAAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACGTGAGCTCACTTTGACTTAGTAAGCCAAATCTTGGACAAGATT  100

seq1  CTGTATGGTAGAGAGCAGTAACTTAGCTGTGCTCACATTCAGAAGACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGGTAGAGAGCAGTAACTTAGCTGTGCTCACATTCAGAAGACTAT  150

seq1  GAGGGCCAATGGCTTCTCTGTGATCAGAGGGGATCAAATGGATTGATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCAATGGCTTCTCTGTGATCAGAGGGGATCAAATGGATTGATTTC  200

seq1  TGTCCCTGTCAGTGAGCAATCACTATTTTAGTCTGCCTATCCCAGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGTCAGTGAGCAATCACTATTTTAGTCTGCCTATCCCAGCATTT  250

seq1  TTATCCTATGGGTATAAAGTAGTGGTATCTAATTTGGTAAGAGGCAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTATGGGTATAAAGTAGTGGTATCTAATTTGGTAAGAGGCAAAAA  300

seq1  GGAGAAAGTCTGTGTACATACATACACGCTGTACCCACTGATCTCTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGTCTGTGTACATACATACACGCTGTACCCACTGATCTCTGAGC  350

seq1  ACACATCACAGTAGCAAGCAGTTCCTAAACTTGCATTGCTCAGTCTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCACAGTAGCAAGCAGTTCCTAAACTTGCATTGCTCAGTCTGTGA  400

seq1  CAGCAATTCATTGAAGCTCTTCAGAATTTCTCTACAGGAGAATTTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTCATTGAAGCTCTTCAGAATTTCTCTACAGGAGAATTTGCTGG  450

seq1  AGAAAATTTATGACACAAAACTTCCAGCTTAAAGACAGTTTTGTTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTTATGACACAAAACTTCCAGCTTAAAGACAGTTTTGTTTATTT  500

seq1  GAATGTGATAATGGTATAAGATTTGTGTTATGCAAAAACAAACACACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGATAATGGTATAAGATTTGTGTTATGCAAAAACAAACACACTCA  550

seq1  AAAGTAAAAAAAAAAAAAGATAAATAACTAGTAATATGAGATAATGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAAAAAAAAAAAGATAAATAACTAGTAATATGAGATAATGTTAA  600

seq1  GATATAGCAAAGAGATACTAATTAGCTAGTTTGATTCTATCAACTATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGCAAAGAGATACTAATTAGCTAGTTTGATTCTATCAACTATTAA  650

seq1  AATGATTTTCAATATTTTATCATACAAACATATTATTAAGTTTTGAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTCAATATTTTATCATACAAACATATTATTAAGTTTTGAAGTA  700

seq1  AAAGAAAAAATGCTTTAAAGATTCACTGTTTCATGACCTATAATAGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAATGCTTTAAAGATTCACTGTTTCATGACCTATAATAGATTT  750

seq1  TCCTAAACACTTTAGTCATTGGTAATATTTTATTTCTCTAGTTTCTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAACACTTTAGTCATTGGTAATATTTTATTTCTCTAGTTTCTTTAA  800

seq1  AATAGATCCAGGATCACATCCTTCTTCCCTGAACATTTTTACCC-TTTAA  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATAGATCCAGGATCACATCCTTCTTCCCTGAACATTTTTACCCTTTTAA  850

seq1  AGATGATCTTTACCCTACAGTGTTCATTTGTCAGAAATGTACTAACAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATCTTTACCCTACAGTGTTCATTTGTCAGAAATGTACTAACAAAT  900

seq1  GCTAAGATGCTATGGAATGGTGATAA-TTTCCCACGTGTTCTTGAATCAT  948
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTAAGATGCTATGGAATGGTGATAATTTTCCCACGTGTTCTTGAATCAT  950

seq1  TTTGCTCCTTTTCTTTTCTGAGCAGTGACATTCCTTCACATTTTCATCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCTTTTCTTTTCTGAGCAGTGACATTCCTTCACATTTTCATCTC  1000

seq1  TCGTCTATGCTTCTCTGCTCTGAGAAGTCTCCTAATAAAGCAATGATCAT  1048
      |||||||||||||||||||||||| ||||||   ||||||| ||||||||
seq2  TCGTCTATGCTTCTCTGCTCTGAG-AGTCTC--TATAAAGC-ATGATCAT  1046

seq1  TTCTATCCATCTCTGGTTTATGTTTCACAGGCCATGAAATAAACCTGCAA  1098
      |||||| ||||||||  ||||||||| |||| ||||||||||| ||||| 
seq2  TTCTAT-CATCTCTG--TTATGTTTC-CAGG-CATGAAATAAA-CTGCA-  1089

seq1  AGGAAGCGCTGCAGACT-GTGTGGACTGTGTTTGCAGGGGATGAAAAAGG  1147
          ||||||||| ||| |||||||||| | |||||  ||||||||   |
seq2  ---GAGCGCTGCA-ACTGGTGTGGACTG-GGTTGCA--GGATGAAA---G  1129

seq1  TTGATGG  1154
       ||||||
seq2  CTGATGG  1136

seq1: chr13_83176756_83177935
seq2: B6Ng01-002K21.g_69_1247 (reverse)

seq1  ATAAATGATATG--ACATAAAAAGAGTGTCTGTAGGAAATCGT-CCAGTA  47
      |||||||  |||  |||||||| | || ||||||||||||||| ||||| 
seq2  ATAAATGGAATGGAACATAAAAGGGGT-TCTGTAGGAAATCGTCCCAGTT  49

seq1  GAAATTAGAAACAATGAATTCTGAGAGTATCCTTACCTCTGCTCCTTAAC  97
      |||||| ||||||||||||||||||||| |||||| ||||| ||| ||||
seq2  GAAATTGGAAACAATGAATTCTGAGAGTTTCCTTAACTCTGTTCC-TAAC  98

seq1  TGGTGAC-TATTTTATTC-AAATAACACATTTCCAGTTTAAAGTGCATAG  145
      ||||||| |||||||||| |||||||||| || |||||||| ||||||||
seq2  TGGTGACTTATTTTATTCAAAATAACACA-TTGCAGTTTAAGGTGCATAG  147

seq1  ATGAATTATGAACTTCTTTAG-AGAACATAAACTCCTGAGTCTTTTTAAA  194
      ||||| ||||||||||||||| ||||||||||||||||||||||||| ||
seq2  ATGAA-TATGAACTTCTTTAGAAGAACATAAACTCCTGAGTCTTTTT-AA  195

seq1  GGGTCAGAACATAAAGTCTCATAGAAAGGTCTTATCATTGTGGTTTGTAG  244
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGTCAGAACATAAAGTCTCATAG-AAGGTCTTATCATTGTGGTTTGTAG  244

seq1  CAAACACCTAAGTTTTAATGATTTTGTACAACACTAATAAAATAACATGT  294
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACA-CTAAGTTTTAATGATTTTGTACAACACTAATAAAATAACATGT  293

seq1  ATCTTAATTTAGGGCCAGAGTGTTATTTAAGATACAAAATAATTTGTTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATTTAGGGCCAGAGTGTTATTTAAGATACAAAATAATTTGTTCT  343

seq1  AGTGAACCTTTGTGGTGTGGTGTCATAAAATATAGTTAAAATCACTAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACCTTTGTGGTGTGGTGTCATAAAATATAGTTAAAATCACTAAAA  393

seq1  TGTAAACATTTTAAAATTAATTTAAAATTAATCTATTTTCTTCTTCAAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACATTTTAAAATTAATTTAAAATTAATCTATTTTCTTCTTCAAGA  443

seq1  AAAATAAAGGAATGGAAAAAAAAAGAAAAATAAAGGAAAAAAGTCTGAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGGAATGGAAAAAAAAAGAAAAATAAAGGAAAAAAGTCTGAAA  493

seq1  CCTAGAACATTTGAAAGACAAGAGGATCTAGTTTTAGCTATTTTGTTCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACATTTGAAAGACAAGAGGATCTAGTTTTAGCTATTTTGTTCTG  543

seq1  TAAGCATTTATTTTTACTAGTTCCCGTTTTAAATTTACATTTATTTATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATTTATTTTTACTAGTTCCCGTTTTAAATTTACATTTATTTATTT  593

seq1  TTAATATTTTTTGATAAAGAGCATTTTTTATGTCTAGCAATATAGTTTAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTTTTGATAAAGAGCATTTTTTATGTCTAGCAATATAGTTTAC  643

seq1  ATATTAACTAACTGTAATAGGATGAATTGTGTGTGTGTGTGTGTTTGTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACTAACTGTAATAGGATGAATTGTGTGTGTGTGTGTGTTTGTGT  693

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATGTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATGTAT  743

seq1  GTAGATACTTAAAGTGAATTCAATACTTCAATACCTAAGGAAACCAGAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATACTTAAAGTGAATTCAATACTTCAATACCTAAGGAAACCAGAAG  793

seq1  AACCTACCAGAAGTCCTGAAGTCAGAGTTCTATGCATTTGTTACCCCCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACCAGAAGTCCTGAAGTCAGAGTTCTATGCATTTGTTACCCCCCT  843

seq1  GACACACATGCTCAGATACAAACTCAGAGCCCCTGCAAGAGCAGTACACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACATGCTCAGATACAAACTCAGAGCCCCTGCAAGAGCAGTACACA  893

seq1  CTCTGAACATCTGCGGCATCTCTCCAACTGTTTTATGGTTTTGAATAGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACATCTGCGGCATCTCTCCAACTGTTTTATGGTTTTGAATAGAA  943

seq1  AAAGTGGGGAAAGGACTTTTAGGATACAAAATTCCTCCTCCTGAAAACAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGGAAAGGACTTTTAGGATACAAAATTCCTCCTCCTGAAAACAA  993

seq1  TCATTTTCAAATCTCTCTGTTTTAAAGGTGGGCCAATAAACAAATGTATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCAAATCTCTCTGTTTTAAAGGTGGGCCAATAAACAAATGTATT  1043

seq1  CCGACTGCACTGATGACCAAAATAGTTAAAGCAAACCCAAATTTCACAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTGCACTGATGACCAAAATAGTTAAAGCAAACCCAAATTTCACAAT  1093

seq1  TGCTGCCTCAAAGGAATAACACAGGTTTGATTCTTGAGGGAGGCAAAAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTCAAAGGAATAACACAGGTTTGATTCTTGAGGGAGGCAAAAAT  1143

seq1  GGTTCCTGTTACTTCATTATACAAATCATTGAATTC  1180
      ||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGTTACTTCATTATACAAATCATTGAATTC  1179