BAC Information

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BAC

Clone NameB6Ng01-003J20
Chromosome13 (Build37)
Map Location 11,012,854 - 11,013,993
singlet/doubletsinglet
Overlap genenone
Upstream geneChrm3
Downstream geneLOC100039648, Zp4, Ryr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003J20.bB6Ng01-003J20.g
ACCDH841272DH841273
length1,2051,120
definitionDH841272|Mus musculus domesticus DNA, BAC clone: B6Ng01-003J20, 5' end.DH841273|Mus musculus domesticus DNA, BAC clone: B6Ng01-003J20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctaagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttatggactgtcttttgccttacagaagcattgcatttttatga
ggtcccatttgcctattcttgatcttagatcacaagccattgctgttcta
ttcaggaatttttcccctgtgcccacatcatcgaggcttttccccacttt
ctcctctataagtttcactgtctctggttttctgtggagttccttgatcc
acttacatttgacctcagtacaaggagataggaatggatcggtccgcatt
cttctacaagagaaccatttagttgcaccagcaccatttgttgaaaatgc
tctttttaccactggatggttttagctctcttgtcaaagatcaagtgacc
ataggtgcgtgggttcatttctgggtcttcaattctatgtcattggtcta
cttgtctgtcaatataccagtaccatgcagattttatcacaattgctctg
tagtacagctttaggtctggcatggtgattcccccagaggttcttttatc
actgagaagagtttatcctaggttttttgttattccagatgaatttgtag
attgtgctttctaattcgttgaagaattgagttggaattttgatggggat
tgcattgaatctgtagactgcttttgcaatatagccatttttactatatt
gatcctgccaatccatgagcatgagagatctttccatcttctgagatctt
ctttaatttctttcttcagagacttgaagttcttatcatacagatctttc
acttccttagttagagttatgccaagatattttatatatttgtgctattg
tgaaggtgttgttccataatttcttttcagcctgtttatcctttggtaga
gaaggccatcacttgttgagttaatatatatcagctatttcactgagctc
cttatcaagtttaggacatctctgtgattttaggccactatcttatcatc
tgaaaaaggtgaattttgaaatcttcttcaaatgtatcctgatctctttg
gtgtcatgttcctgctaggactcaactcatagtgttgatagggtatgaga
ataga
gaattcaatatatcctttcattctcaaaagtttctcacctcaaatcacag
tactctttggtgctttataaaaggaacgtgtttgggcacttgggaaagat
aaatgtctatgagcacttgtttacacatgtcattatttcctagcatcctc
ttgtgctttttcagggctctactctggccatttcaaggctggtaccatat
cttctgtggcctatctcctgttgctggcagtacggaaagtacatccccag
actccctcattgtgtagtcaaatccctggccatgtcagggtgccccatct
caacaagtctctgacagcccttgaatgtcatccccatctaaatgtcatct
cccaatcccaatccagctgagcatttctggccctgctgttccatatcaac
tggagcttgcagtaatttgggtgaatgcagtttttttttttttaaactgg
gagcaaggatggtgctttcctatttggatcaggcagataaatgaccttgg
ttatcactctaaatgaagatggtgctgcctactgaagatcatgtgtctaa
gatgaaattgcatcatccgtgtgagtgtggctgtgtgcctacactcaaag
gacaagtatactaattcttccacatcccaaaaatatgctgcacaacacac
cagcaatttacaaagttcaaatgttaaagatatataattcaaacaccata
atttctgattaaaaatccatggctttgagaagcacagacttaacatattg
ttttggtgggtaatggaaaacagtggagactatattgtttctggtacctc
tgaggcttttatgatattcaaatgcttatattcacatcactcaaatccct
tttttctgatataaatgagtgctgaattttgcagatgcctttgagtctat
ctcatgatgcatattcacaagttgtcgtctaccaccagagaggaagctta
gcttacagagaacttcagcattatgagcactatctatgctttccataaag
ctctttatactgagaacagcattttgactgagaaagtcacctattattat
tacttttacataaaaatggagacaaacgtatcagtgatctttgcattccc
ttcaggatcaatgtctgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_11012854_11013993
seq2: B6Ng01-003J20.g_68_1187 (reverse)

seq1  TTACAGACAATTGAATCTCCTTGAAGAGAATGCAAAGATCACTTGATACG  50
      |||||||| |||||   ||| ||||| ||||||||||||||| |||||||
seq2  TTACAGAC-ATTGA---TCC-TGAAGGGAATGCAAAGATCAC-TGATACG  44

seq1  TTTTGTCTCTA-TTTTATGTAAAAAGTAAATAATAATAGGTGACTTTTCT  99
       |||||||| | |||||||| |||||| |||||||||||||||| |||||
seq2  -TTTGTCTCCATTTTTATGT-AAAAGT-AATAATAATAGGTGAC-TTTCT  90

seq1  CAGTTCCAAAAATGCTGTTCTCCAGTATAAAGAGCTTTTATGGAAAGCAT  149
      ||||    ||||||||||||| ||||||||||||| ||||||||||||| 
seq2  CAGT---CAAAATGCTGTTCT-CAGTATAAAGAGC-TTTATGGAAAGCA-  134

seq1  TAGATAAGTGCTCATAAATGCTGAAGTTTCTCTGTAAAGCTAAGCTTCCT  199
      ||||| ||||||||| |||||||||| |||||||| ||||||||||||| 
seq2  TAGAT-AGTGCTCAT-AATGCTGAAG-TTCTCTGT-AAGCTAAGCTTCC-  179

seq1  TCTCTGGTGGTAGACGACAACTTGTGAATATGCATCATGAGATAGACTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTGGTAGACGACAACTTGTGAATATGCATCATGAGATAGACTCA  229

seq1  AAGGCATCTGCAAAATTCAGCACTCATTTATATCAGAAAAAAGGGATTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATCTGCAAAATTCAGCACTCATTTATATCAGAAAAAAGGGATTTG  279

seq1  AGTGATGTGAATATAAGCATTTGAATATCATAAAAGCCTCAGAGGTACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTGAATATAAGCATTTGAATATCATAAAAGCCTCAGAGGTACCA  329

seq1  GAAACAATATAGTCTCCACTGTTTTCCATTACCCACCAAAACAATATGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATATAGTCTCCACTGTTTTCCATTACCCACCAAAACAATATGTT  379

seq1  AAGTCTGTGCTTCTCAAAGCCATGGATTTTTAATCAGAAATTATGGTGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTGCTTCTCAAAGCCATGGATTTTTAATCAGAAATTATGGTGTT  429

seq1  TGAATTATATATCTTTAACATTTGAACTTTGTAAATTGCTGGTGTGTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATATATCTTTAACATTTGAACTTTGTAAATTGCTGGTGTGTTGT  479

seq1  GCAGCATATTTTTGGGATGTGGAAGAATTAGTATACTTGTCCTTTGAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATATTTTTGGGATGTGGAAGAATTAGTATACTTGTCCTTTGAGTG  529

seq1  TAGGCACACAGCCACACTCACACGGATGATGCAATTTCATCTTAGACACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACACAGCCACACTCACACGGATGATGCAATTTCATCTTAGACACA  579

seq1  TGATCTTCAGTAGGCAGCACCATCTTCATTTAGAGTGATAACCAAGGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCAGTAGGCAGCACCATCTTCATTTAGAGTGATAACCAAGGTCA  629

seq1  TTTATCTGCCTGATCCAAATAGGAAAGCACCATCCTTGCTCCCAGTTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGCCTGATCCAAATAGGAAAGCACCATCCTTGCTCCCAGTTTAA  679

seq1  AAAAAAAAAAACTGCATTCACCCAAATTACTGCAAGCTCCAGTTGATATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACTGCATTCACCCAAATTACTGCAAGCTCCAGTTGATATG  729

seq1  GAACAGCAGGGCCAGAAATGCTCAGCTGGATTGGGATTGGGAGATGACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAGGGCCAGAAATGCTCAGCTGGATTGGGATTGGGAGATGACAT  779

seq1  TTAGATGGGGATGACATTCAAGGGCTGTCAGAGACTTGTTGAGATGGGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGGGGATGACATTCAAGGGCTGTCAGAGACTTGTTGAGATGGGGC  829

seq1  ACCCTGACATGGCCAGGGATTTGACTACACAATGAGGGAGTCTGGGGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACATGGCCAGGGATTTGACTACACAATGAGGGAGTCTGGGGATG  879

seq1  TACTTTCCGTACTGCCAGCAACAGGAGATAGGCCACAGAAGATATGGTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCGTACTGCCAGCAACAGGAGATAGGCCACAGAAGATATGGTAC  929

seq1  CAGCCTTGAAATGGCCAGAGTAGAGCCCTGAAAAAGCACAAGAGGATGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGAAATGGCCAGAGTAGAGCCCTGAAAAAGCACAAGAGGATGCT  979

seq1  AGGAAATAATGACATGTGTAAACAAGTGCTCATAGACATTTATCTTTCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAATGACATGTGTAAACAAGTGCTCATAGACATTTATCTTTCCC  1029

seq1  AAGTGCCCAAACACGTTCCTTTTATAAAGCACCAAAGAGTACTGTGATTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCCAAACACGTTCCTTTTATAAAGCACCAAAGAGTACTGTGATTT  1079

seq1  GAGGTGAGAAACTTTTGAGAATGAAAGGATATATTGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGAAACTTTTGAGAATGAAAGGATATATTGAATTC  1120