BAC Information

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BAC

Clone NameB6Ng01-003L20
Chromosome13 (Build37)
Map Location 11,938,268 - 12,077,010
singlet/doubletdoublet
Overlap geneRyr2
Upstream geneLOC100039648, Zp4
Downstream geneLOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003L20.bB6Ng01-003L20.g
ACCDH841354DH841355
length1,095487
definitionDH841354|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L20, 5' end.DH841355|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,938,268 - 11,939,371)(12,076,518 - 12,077,010)
sequence
tcctgtttgtcaacctcttctcaggcacagtcaccactgagaattcccta
taacgtgcctatgtgtgacaacaggttctcagcagtctgtagggctgagt
gatgctgtcgacatgggatagacaatgagattcaggtaagaaactcatca
ccgccacattcagacaatggctttgccgactttggttggaggtggtggca
ttatttgactgtctttccagaatgaaggttcctgaatagaaacctaggca
gaggacctaggcagtaaaaagaattaaatatttgatattaaatatcaaac
ccaacactgacagattgttagcagggactcggagggaaaacatcaaaact
acacaactgttggcaagatgcagcaagagcttgcaaagttagtctcagct
ggtgaggcccaaagttggcaatgctatgtgcctatctgcttatattcttc
tccactatctttcgctgaggcagggtctcttgcctgaacccagagcttat
caactaaccagtctaactggtcagcttacccagagattctcaccacctcc
cgggaattgcctcctgagggctaggattacaggtgtctgccataccaagg
cccagtataaaatctcccctccccactcttactttctgaccttcctatag
cttatgaacttgaaagtttagcatgtattcttccacatcccacacaaagt
cacagactttgtatttgttttatctcctgcaggtctttgagtatcaagac
caaatcaattattagtgattgatgcatcaattttataactaacatcttca
gtgatttttactctttagtaccatgaaatacatacattttgtcacatgaa
ttgctttcatttgcctggatattatcccagtgcacattccactcaagccc
tcttctccatttgagttcatactgccctggtattccagtagccattcttt
ttcaacctctctgaataaagtttcacagcaggtctctatcatggcttcta
tttcatgacccaataccactattttcatttaaatgcagtttctatcaaat
ataatgaaaagtcatgtaagtgggcccatgccctactattgttgg
aaggcaggaactgaagcagaaaccacaggtgtgtgctgctttctgacttg
ctccctaagctcaatcatcaatcagttaaatgctttatcatcttgcctat
aggtcattctggccagagcattttatcaactgatgttcctgttctcggac
aactgcctgtgtcaagttgaaaataaacaaggccgggcactgtagaaata
aaataagaagttaaaagatttgataaataaggagaaattttcatggctct
ttgcatcttttaaaaggatagcaagactgccgccatataccattatcaga
gaaattacattaaaaattcaaataggagtgacagaatggaacaccaggtg
acacacttgcctctaagtctggaaactttcaattcctgggaccagcatca
caggagaaaaccaagtcttgcaagtcgtcctctgatctccagatgtatac
tgtggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_11938268_11939371
seq2: B6Ng01-003L20.b_59_1153

seq1  TCCTGTTTGTCAACCTCTTCTCAGGCACAGTCACCACTGAGAATTCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTGTCAACCTCTTCTCAGGCACAGTCACCACTGAGAATTCCCTA  50

seq1  TAACGTGCCTATGTGTGACAACAGGTTCTCAGCAGTCTGTAGGGCTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTGCCTATGTGTGACAACAGGTTCTCAGCAGTCTGTAGGGCTGAGT  100

seq1  GATGCTGTCGACATGGGATAGACAATGAGATTCAGGTAAGAAACTCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTCGACATGGGATAGACAATGAGATTCAGGTAAGAAACTCATCA  150

seq1  CCGCCACATTCAGACAATGGCTTTGCCGACTTTGGTTGGAGGTGGTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCACATTCAGACAATGGCTTTGCCGACTTTGGTTGGAGGTGGTGGCA  200

seq1  TTATTTGACTGTCTTTCCAGAATGAAGGTTCCTGAATAGAAACCTAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGACTGTCTTTCCAGAATGAAGGTTCCTGAATAGAAACCTAGGCA  250

seq1  GAGGACCTAGGCAGTAAAAAGAATTAAATATTTGATATTAAATATCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTAGGCAGTAAAAAGAATTAAATATTTGATATTAAATATCAAAC  300

seq1  CCAACACTGACAGATTGTTAGCAGGGACTCGGAGGGAAAACATCAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTGACAGATTGTTAGCAGGGACTCGGAGGGAAAACATCAAAACT  350

seq1  ACACAACTGTTGGCAAGATGCAGCAAGAGCTTGCAAAGTTAGTCTCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTGTTGGCAAGATGCAGCAAGAGCTTGCAAAGTTAGTCTCAGCT  400

seq1  GGTGAGGCCCAAAGTTGGCAATGCTATGTGCCTATCTGCTTATATTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGCCCAAAGTTGGCAATGCTATGTGCCTATCTGCTTATATTCTTC  450

seq1  TCCACTATCTTTCGCTGAGGCAGGGTCTCTTGCCTGAACCCAGAGCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTATCTTTCGCTGAGGCAGGGTCTCTTGCCTGAACCCAGAGCTTAT  500

seq1  CAACTAACCAGTCTAACTGGTCAGCTTACCCAGAGATTCTCACCACCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACCAGTCTAACTGGTCAGCTTACCCAGAGATTCTCACCACCTCC  550

seq1  CGGGAATTGCCTCCTGAGGGCTAGGATTACAGGTGTCTGCCATACCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAATTGCCTCCTGAGGGCTAGGATTACAGGTGTCTGCCATACCAAGG  600

seq1  CCCAGTATAAAATCTCCCCTCCCCACTCTTACTTTCTGACCTTCCTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTATAAAATCTCCCCTCCCCACTCTTACTTTCTGACCTTCCTATAG  650

seq1  CTTATGAACTTGAAAGTTTAGCATGTATTCTTCCACATCCCACACAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAACTTGAAAGTTTAGCATGTATTCTTCCACATCCCACACAAAGT  700

seq1  CACAGACTTTGTATTTGTTTTATCTCCTGCAGGTCTTTGAGTATCAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTTTGTATTTGTTTTATCTCCTGCAGGTCTTTGAGTATCAAGAC  750

seq1  CAAATCAATTATTAGTGATTGATGCATCAATTTTATAACTAACATCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAATTATTAGTGATTGATGCATCAATTTTATAACTAACATCTTCA  800

seq1  GTGATTTTTACTCTTTAGTACCATGAAATACATACATTTTGTCACATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTACTCTTTAGTACCATGAAATACATACATTTTGTCACATGAA  850

seq1  TTGCTTTCATTTGCCTGGATATTATCCCAGTGCACATTCCACTCAAGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCATTTGCCTGGATATTATCCCAGTGCACATTCCACTCAAGCCC  900

seq1  TCTTCTCCATTTGAGTTCATACTGCCCTGGTATTCCAGTAGCCATTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCATTTGAGTTCATACTGCCCTGGTATTCCAGTAGCCATTCTTT  950

seq1  TTCCAACCTCTCTGAATAAAGTTTCACAGCAGGTCTCTATCATGGCTTCT  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-CAACCTCTCTGAATAAAGTTTCACAGCAGGTCTCTATCATGGCTTCT  999

seq1  ATTTCATGACCCAATACCAACTTATTTTCATTTAAAATTGCAGTTTTCTA  1050
      |||||||||||||||||||   ||||||||||||||  ||||| ||||||
seq2  ATTTCATGACCCAATACCA--CTATTTTCATTTAAA--TGCAG-TTTCTA  1044

seq1  TTCATATATATTGACAAAGTCAATGT-AGTGGGCCCATGCCCTACTATAT  1099
       ||| ||||| ||| |||||| |||| ||||||||||||||||||||| |
seq2  -TCAAATATAATGA-AAAGTC-ATGTAAGTGGGCCCATGCCCTACTAT-T  1090

seq1  GTTGG  1104
      |||||
seq2  GTTGG  1095

seq1: chr13_12076518_12077010
seq2: B6Ng01-003L20.g_68_560 (reverse)

seq1  CACACACACACACACACACACACACACACACGCCACAGTATACATCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACGCCACAGTATACATCTGGA  50

seq1  GATCAGAGGACGACTTGCAAGACTTGGTTTTCTCCTGTGATGCTGGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGGACGACTTGCAAGACTTGGTTTTCTCCTGTGATGCTGGTCCC  100

seq1  AGGAATTGAAAGTTTCCAGACTTAGAGGCAAGTGTGTCACCTGGTGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGAAAGTTTCCAGACTTAGAGGCAAGTGTGTCACCTGGTGTTCC  150

seq1  ATTCTGTCACTCCTATTTGAATTTTTAATGTAATTTCTCTGATAATGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCACTCCTATTTGAATTTTTAATGTAATTTCTCTGATAATGGTA  200

seq1  TATGGCGGCAGTCTTGCTATCCTTTTAAAAGATGCAAAGAGCCATGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCGGCAGTCTTGCTATCCTTTTAAAAGATGCAAAGAGCCATGAAAA  250

seq1  TTTCTCCTTATTTATCAAATCTTTTAACTTCTTATTTTATTTCTACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTATTTATCAAATCTTTTAACTTCTTATTTTATTTCTACAGTG  300

seq1  CCCGGCCTTGTTTATTTTCAACTTGACACAGGCAGTTGTCCGAGAACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCCTTGTTTATTTTCAACTTGACACAGGCAGTTGTCCGAGAACAGG  350

seq1  AACATCAGTTGATAAAATGCTCTGGCCAGAATGACCTATAGGCAAGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGTTGATAAAATGCTCTGGCCAGAATGACCTATAGGCAAGATGA  400

seq1  TAAAGCATTTAACTGATTGATGATTGAGCTTAGGGAGCAAGTCAGAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATTTAACTGATTGATGATTGAGCTTAGGGAGCAAGTCAGAAAGC  450

seq1  AGCACACACCTGTGGTTTCTGCTTCAGTTCCTGCCTTGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACACCTGTGGTTTCTGCTTCAGTTCCTGCCTTGAATTC  493