BAC Information

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BAC

Clone NameB6Ng01-004J23
Chromosome13 (Build37)
Map Location 103,842,551 - 103,942,883
singlet/doubletdoublet
Overlap geneMast4
Upstream geneCd180
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004J23.bB6Ng01-004J23.g
ACCDH841980DH841981
length1,1401,100
definitionDH841980|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J23, 5' end.DH841981|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,941,729 - 103,942,883)(103,842,551 - 103,843,673)
sequence
gaattcagatttctttaggcttcctttatttacatgtggccatcctttct
tgaaacattagaatgattctatatttaggcctcatcagacatgttgcctc
agaggtctttttaagcctggaatgacaatgggcgagagacatgatacaca
gacattaatacatccccaccaactactttattacactggaatcgggaccg
tctttgtagatgacagactccaaacagatctgatgtgtgatacacttgtc
agtgtgtgaaagttagtgtgcatatcccttattacgatgccatccaacac
ccacagtgttctctggggattcaaatcgttgaagaataaatgcacttaaa
ggaatggctagcagaaatgatcaggtgtagaggctcgagagatgaccttt
tgtaggccaattggtaaccgtccctatctcagcctactgatttccccatg
aacatggctgagtcctctctctctctctctctctctctctctctctctct
aaggcatgttaaggagcctggtgatagtgttattataaaatacaaagcag
tgacctcggagtccacagttacttcgtgtcgtgggagatttcagaagtcg
tcagtggcttaagtaatagaccagaaatggaaaggctgccccacacctgc
cattcattgtcagccagagctgaggcaatcacgatgctaatctgggcttt
gagttttcttccttaaatataagggcactcttatgatgtactgtataaag
cacgtgggtatttgtgaagatttaattcacagcataagcttgcggcttgg
ataacaatgtctccatagagcgtgttgttttttaaaccagatggatttgg
caattactaacttgggagaacagtttctacagttctgacggagacctctc
aaaccagacatagggaccttgaagtgttgtcattaaggcaagagaggaga
cctatatgttatttgggaagcaacgtttgctctaaatcatacaaagaaac
catataaaacttgttctgggtctgctctatccatactcagcattaacaaa
cattcttaggcaaaataaagtaaaaacaaaattaacccttaaggaataat
atataggcatcattattgggagtagaccttgaaatctgtt
gaattctggtcccttccttctccaaccttgggttctgaggtctcagagat
gtttattcttcaggtaggcaaggatgaaaaaggatcaatcctaaaaggtt
tacactaagcggaaagagaagaccatctgctctgagatagctccgggctg
attttcccagcaggggagcccaagttttatgaacctcattctcattagag
aaaaggagagaaattgctgagaattcatagaaaggattttcaaaccctac
agcaggttcaaatgatgtatcctcacaggcaggtttgggttgctggatta
tctgcgcactgtgggagtctggggtttgttttatacagacggatagaatg
tttcaacactttctggtcttgaaatgtatccagtgctctgcctcctacta
tttgccctctcctgctcgaattttcaatccaatctttacgaacttattta
ttctggatcagcaaagcctcggatgtaaaatgacagctcatggagaataa
atcttcatcatccttttgtgctgacatgccaggagatttgaaagctaatc
ctctgtgtacctcccgtcctcttctgcccactggatcgtgtccccgatgc
tcctgtatcaaattgatttttatttaacggaagcctttagccgctcccac
aaataacagcgccaccgtctttgaactattattcctactggcatgttgtt
gcattctttgttcatttgctgtgttaacagccttcccaactgggggacag
acaggtaagcatattctcaaagtggaagatgcttctggtggtcctagtgg
acaggcttagcccgtgtgaggggcattgcttgtctctgatcttccctgaa
ccctttatttttattcaaataaaacagatttaaaagcctgtttttttcta
tacccaaagcacaaaggctttctaagtttctcagcatgtaaaaatccagg
ctgggagaaaagccattcttgagcagaaatgagcttcctatttcggactc
ttattctcatagtatgaagtcatttctcttttttaaatagctccaccgga
gacctgatgaagtctactaacaatagactgttgaattttgtgaggggtaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103941729_103942883
seq2: B6Ng01-004J23.b_50_1189 (reverse)

seq1  AACAGATTTCAAGTTCTTCCTCCACAATAATGATGCCTATATATAATCCC  50
      ||||||||||||| || | |||| |||||||||||||||||||| || ||
seq2  AACAGATTTCAAGGTC-TACTCC-CAATAATGATGCCTATATATTATTCC  48

seq1  TTAAGGGTGTAATTTTTGTTTTTTACTTTATTTTTTGCCTTAAGAAATGT  100
      |||||||| |||||||   |||||||||||  ||||||| |||| |||||
seq2  TTAAGGGT-TAATTTT--GTTTTTACTTTA--TTTTGCC-TAAG-AATGT  91

seq1  TTGTTAATGCTGAGTAATGGATTAGAAGCAAGACCCAGAACAAGTTTTAT  150
      ||||||||||||||| ||||| ||| ||| ||||||||||||||||||||
seq2  TTGTTAATGCTGAGT-ATGGA-TAG-AGC-AGACCCAGAACAAGTTTTAT  137

seq1  ATGGTTTCTTTTGTATGATTTTAGAGCAAACGTTGCTT-CCAAATAACAT  199
      |||||||| ||||||||| ||||||||||||||||||| |||||||||||
seq2  ATGGTTTC-TTTGTATGA-TTTAGAGCAAACGTTGCTTCCCAAATAACAT  185

seq1  ATAGGTCTCCTCTCTTGCCTTAATGACAAACACTTCAAGGTCCCTATGTC  249
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAGGTCTCCTCTCTTGCCTTAATGAC-AACACTTCAAGGTCCCTATGTC  234

seq1  TGGTTTGAGAGGTCTCCGTCAGAACTGTAGAAACTGTTCTCCAAAGTTAG  299
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGTTTGAGAGGTCTCCGTCAGAACTGTAGAAACTGTTCTCCCAAGTTAG  284

seq1  TAATTGCCAAATCCATCTGGTTTAAAAAACAACACGCTCTATGGAGACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCCAAATCCATCTGGTTTAAAAAACAACACGCTCTATGGAGACAT  334

seq1  TGTTATCCAAGCCGCAAGCTTATGCTGTGAATTAAATCTTCACAAATACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCCAAGCCGCAAGCTTATGCTGTGAATTAAATCTTCACAAATACC  384

seq1  CACGTGCTTTATACAGTACATCATAAGAGTGCCCTTATATTTAAGGAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCTTTATACAGTACATCATAAGAGTGCCCTTATATTTAAGGAAGA  434

seq1  AAACTCAAAGCCCAGATTAGCATCGTGATTGCCTCAGCTCTGGCTGACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAGCCCAGATTAGCATCGTGATTGCCTCAGCTCTGGCTGACAA  484

seq1  TGAATGGCAGGTGTGGGGCAGCCTTTCCATTTCTGGTCTATTACTTAAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCAGGTGTGGGGCAGCCTTTCCATTTCTGGTCTATTACTTAAGC  534

seq1  CACTGACGACTTCTGAAATCTCCCACGACACGAAGTAACTGTGGACTCCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACGACTTCTGAAATCTCCCACGACACGAAGTAACTGTGGACTCCG  584

seq1  AGGTCACTGCTTTGTATTTTATAATAACACTATCACCAGGCTCCTTAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTGCTTTGTATTTTATAATAACACTATCACCAGGCTCCTTAACA  634

seq1  TGCCTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACTCAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACTCAGC  684

seq1  CATGTTCATGGGGAAATCAGTAGGCTGAGATAGGGACGGTTACCAATTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCATGGGGAAATCAGTAGGCTGAGATAGGGACGGTTACCAATTGG  734

seq1  CCTACAAAAGGTCATCTCTCGAGCCTCTACACCTGATCATTTCTGCTAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAAAGGTCATCTCTCGAGCCTCTACACCTGATCATTTCTGCTAGC  784

seq1  CATTCCTTTAAGTGCATTTATTCTTCAACGATTTGAATCCCCAGAGAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTAAGTGCATTTATTCTTCAACGATTTGAATCCCCAGAGAACA  834

seq1  CTGTGGGTGTTGGATGGCATCGTAATAAGGGATATGCACACTAACTTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTGTTGGATGGCATCGTAATAAGGGATATGCACACTAACTTTCA  884

seq1  CACACTGACAAGTGTATCACACATCAGATCTGTTTGGAGTCTGTCATCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGACAAGTGTATCACACATCAGATCTGTTTGGAGTCTGTCATCTA  934

seq1  CAAAGACGGTCCCGATTCCAGTGTAATAAAGTAGTTGGTGGGGATGTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACGGTCCCGATTCCAGTGTAATAAAGTAGTTGGTGGGGATGTATT  984

seq1  AATGTCTGTGTATCATGTCTCTCGCCCATTGTCATTCCAGGCTTAAAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGTGTATCATGTCTCTCGCCCATTGTCATTCCAGGCTTAAAAAG  1034

seq1  ACCTCTGAGGCAACATGTCTGATGAGGCCTAAATATAGAATCATTCTAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGGCAACATGTCTGATGAGGCCTAAATATAGAATCATTCTAAT  1084

seq1  GTTTCAAGAAAGGATGGCCACATGTAAATAAAGGAAGCCTAAAGAAATCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGAAAGGATGGCCACATGTAAATAAAGGAAGCCTAAAGAAATCT  1134

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1140

seq1: chr13_103842551_103843673
seq2: B6Ng01-004J23.g_67_1166

seq1  GAATTCTGGTCCCTTCCTTCTCCAACCTTGGGTTCTGAGGTCTCAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCCCTTCCTTCTCCAACCTTGGGTTCTGAGGTCTCAGAGAT  50

seq1  GTTTATTCTTCAGGTAGGCAAGGATGAAAAAGGATCAATCCTAAAAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCTTCAGGTAGGCAAGGATGAAAAAGGATCAATCCTAAAAGGTT  100

seq1  TACACTAAGCGGAAAGAGAAGACCATCTGCTCTGAGATAGCTCCGGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAAGCGGAAAGAGAAGACCATCTGCTCTGAGATAGCTCCGGGCTG  150

seq1  ATTTTCCCAGCAGGGGAGCCCAAGTTTTATGAACCTCATTCTCATTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCAGCAGGGGAGCCCAAGTTTTATGAACCTCATTCTCATTAGAG  200

seq1  AAAAGGAGAGAAATTGCTGAGAATTCATAGAAAGGATTTTCAAACCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGAGAAATTGCTGAGAATTCATAGAAAGGATTTTCAAACCCTAC  250

seq1  AGCAGGTTCAAATGATGTATCCTCACAGGCAGGTTTGGGTTGCTGGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTCAAATGATGTATCCTCACAGGCAGGTTTGGGTTGCTGGATTA  300

seq1  TCTGCGCACTGTGGGAGTCTGGGGTTTGTTTTATACAGACGGATAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGCACTGTGGGAGTCTGGGGTTTGTTTTATACAGACGGATAGAATG  350

seq1  TTTCAACACTTTCTGGTCTTGAAATGTATCCAGTGCTCTGCCTCCTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACACTTTCTGGTCTTGAAATGTATCCAGTGCTCTGCCTCCTACTA  400

seq1  TTTGCCCTCTCCTGCTCGAATTTTCAATCCAATCTTTACGAACTTATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCTCTCCTGCTCGAATTTTCAATCCAATCTTTACGAACTTATTTA  450

seq1  TTCTGGATCAGCAAAGCCTCGGATGTAAAATGACAGCTCATGGAGAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATCAGCAAAGCCTCGGATGTAAAATGACAGCTCATGGAGAATAA  500

seq1  ATCTTCATCATCCTTTTGTGCTGACATGCCAGGAGATTTGAAAGCTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATCATCCTTTTGTGCTGACATGCCAGGAGATTTGAAAGCTAATC  550

seq1  CTCTGTGTACCTCCCGTCCTCTTCTGCCCACTGGATCGTGTCCCCGATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTACCTCCCGTCCTCTTCTGCCCACTGGATCGTGTCCCCGATGC  600

seq1  TCCTGTATCAAATTGATTTTTATTTAACGGAAGCCTTTAGCCGCTCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTATCAAATTGATTTTTATTTAACGGAAGCCTTTAGCCGCTCCCAC  650

seq1  AAATAACAGCGCCACCGTCTTTGAACTATTATTCCTACTGGCATGTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAGCGCCACCGTCTTTGAACTATTATTCCTACTGGCATGTTGTT  700

seq1  GCATTCTTTGTTCATTTGCTGTGTTAACAGCCTTCCCAACTGGGGGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTTGTTCATTTGCTGTGTTAACAGCCTTCCCAACTGGGGGACAG  750

seq1  ACAGGTAAGCATATTCTCAAAGTGGAAGATGCTTCTGGTGGTCCTAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAAGCATATTCTCAAAGTGGAAGATGCTTCTGGTGGTCCTAGTGG  800

seq1  ACAGGCTTAGCCCGTGTGAGGGGCATTGCTTGTCTCTGATCTTCCCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTAGCCCGTGTGAGGGGCATTGCTTGTCTCTGATCTTCCCTGAA  850

seq1  CCCTTTATTTTTATTCAAATAAAAACAGATTTAAAAGCCTGTTTTTTTCT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCTTTATTTTTATTCAAAT-AAAACAGATTTAAAAGCCTGTTTTTTTCT  899

seq1  ATACCCAAAGCACAAAAGGCTTTCTAAGTTTCTCAGGCAATGTAAAAATC  950
      ||||||||||||| ||||||||||||||||||||||   |||||||||||
seq2  ATACCCAAAGCAC-AAAGGCTTTCTAAGTTTCTCAG--CATGTAAAAATC  946

seq1  CAGGCTGGGGAGAAAAAGCCAATTCTTTGAGCAGAAAATGAGCTTCCTAT  1000
      |||||| ||||| ||||||| |||| |||||||| |||||||||||||||
seq2  CAGGCT-GGGAG-AAAAGCC-ATTC-TTGAGCAG-AAATGAGCTTCCTAT  991

seq1  TTTCCGGACTCTTATTTCCTCAATAGTATGAAAGTCATTTCTCTTTTTTA  1050
      ||  ||||||||||||  ||| |||||||| |||||||||||||||||||
seq2  TT--CGGACTCTTATT--CTC-ATAGTATG-AAGTCATTTCTCTTTTTTA  1035

seq1  AAAATTAGCTTCCACCGGAGACCCTGATAGAAGTCTACCTAACAATAAGA  1100
      ||   |||| ||||||||||| |||||| |||||||| |||||||| |||
seq2  AA---TAGC-TCCACCGGAGA-CCTGAT-GAAGTCTA-CTAACAAT-AGA  1077

seq1  CTGTGAGATGTTGTGAGGGGTAA  1123
      ||||   || |||||||||||||
seq2  CTGTTGAATTTTGTGAGGGGTAA  1100