BAC Information

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BAC

Clone NameB6Ng01-004L19
Chromosome13 (Build37)
Map Location 37,935,194 - 38,073,801
singlet/doubletdoublet
Overlap geneRreb1, Ssr1
Upstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
Downstream geneCage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004L19.bB6Ng01-004L19.g
ACCDH842068DH842069
length761735
definitionDH842068|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L19, 5' end.DH842069|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,935,194 - 37,935,949)(38,073,068 - 38,073,801)
sequence
gaattcatctcacacttgtgtcttcatatttgcctagatcagctaagaga
gcttccgtttctttgttgattttcttgctctttcattttgaactctcgtc
caaaggttgacctgggattcttggtcctccagccttagcctccaagtgct
gggatcagaggcatgaagtaccctgtggagctgtttcatttcataaacag
gagacagcgtggactggaggatagtcagagagcatcctacctccctcctt
gttttgggggtggggctcatcataatgctttgctctcttcaggggccctg
gacgagttgtagagctggacctgaattgctgtgagctttgccttttgcat
ctggagggtctttgaaaggggattgcttggaaactagaaacagaatctaa
gttttgcatgcttacgggctcaggttatcactggcccacagggtctgtta
ttatttataatcggtgattttgctcgaatgagaagcaaatcaggttagga
gagatctgtgctctttatttctcaactatggattgcatgcctgtgtcggt
cactctgccttgacacctagtccaggtaccaagtgccggggaggcaagga
taggcatatggtttcctggtgtaagtctccacagcaactggcaaatcggc
gaggccatactgcagagatgccagtgtgctgcagccggggaaagaggaag
tgttgtcccagcccagccgtggagggcctaccacgtgggaggaggaggtg
ggggaaggaaa
gaattcaggtcatgtgtgatggtaaatgccctaatttcaggactaaaaag
gctgaggcagaggaatcacattttgggagccctcctgggctctccaaaac
caaacaatagtgagctgaagttagcttccatgaactcctaggtgaggggt
agcctgtgatgttgtctgaggcagggaaggaagatggatctgagtgttgg
taacactaaacaccaggagaatcccactgttgcagttttcccgaggtgag
atggcttggttgcttagcaggttgtaaatgggtggtggaggcactctgtc
ttgttttctggtatatgatatgaggggtatttttcattcatgattctttt
tctccacctagagtttaaagttttctctggaaaaataaagcattttgact
taggtagtttgagttacatttcttccttaggttttcgcccaccctgaata
ggctgtaatggtaaatgttcgtcttccatagctgagaaagtcgtgacaca
tatatgtgattactttttgtttaaacaccatgcttttttctgctgttaag
gtagttttgaaaactattttcccccaaaacaaatgtctgtagagtcttaa
agactgctctcgcctgcctgctgcctaacccgagccactgttgagaaggt
atctgaagtgggctcttctgagtggaattgagccaggcatgataagtctt
cagaaggagacctttcatgaaatcaccgagctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_37935194_37935949
seq2: B6Ng01-004L19.b_46_806

seq1  GAATTCATCTCACACTTGTGTCTTCATATTTGCCTAGATCAGCTAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCACACTTGTGTCTTCATATTTGCCTAGATCAGCTAAGAGA  50

seq1  GCTTCCGTTTCTTTGTTGATTTTCTTGCTCTTTCATTTTGAACTCTCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCGTTTCTTTGTTGATTTTCTTGCTCTTTCATTTTGAACTCTCGTC  100

seq1  CAAAGGTTGACCTGGGATTCTTGGTCCTCCAGCCTTAGCCTCCAAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTGACCTGGGATTCTTGGTCCTCCAGCCTTAGCCTCCAAGTGCT  150

seq1  GGGATCAGAGGCATGAAGTACCCTGTGGAGCTGTTTCATTTCATAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAGAGGCATGAAGTACCCTGTGGAGCTGTTTCATTTCATAAACAG  200

seq1  GAGACAGCGTGGACTGGAGGATAGTCAGAGAGCATCCTACCTCCCTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCGTGGACTGGAGGATAGTCAGAGAGCATCCTACCTCCCTCCTT  250

seq1  GTTTTGGGGGTGGGGCTCATCATAATGCTTTGCTCTCTTCAGGGGCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGGGGTGGGGCTCATCATAATGCTTTGCTCTCTTCAGGGGCCCTG  300

seq1  GACGAGTTGTAGAGCTGGACCTGAATTGCTGTGAGCTTTGCCTTTTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGTTGTAGAGCTGGACCTGAATTGCTGTGAGCTTTGCCTTTTGCAT  350

seq1  CTGGAGGGTCTTTGAAAGGGGATTGCTTGGAAACTAGAAACAGAATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGGTCTTTGAAAGGGGATTGCTTGGAAACTAGAAACAGAATCTAA  400

seq1  GTTTTGCATGCTTACGGGCTCAGGTTATCACTGGCCCACAGGGTCTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCATGCTTACGGGCTCAGGTTATCACTGGCCCACAGGGTCTGTTA  450

seq1  TTATTTATAATCGGTGATTTTGCTCGAATGAGAAGCAAATCAGGTTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAATCGGTGATTTTGCTCGAATGAGAAGCAAATCAGGTTAGGA  500

seq1  GAGATCTGTGCTCTTTATTTCTCAACTATGGATTGCATGCCTGTGTCGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGTGCTCTTTATTTCTCAACTATGGATTGCATGCCTGTGTCGGT  550

seq1  CACTCTGCCTTGACACCTAGTCCAGGTACCAAGTGCCGGGGAGGCAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCCTTGACACCTAGTCCAGGTACCAAGTGCCGGGGAGGCAAGGA  600

seq1  TAGGCATATGG-TTCCTGGTGTAAGTCTCCACAGCAACTGGCAAATCGGC  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATATGGTTTCCTGGTGTAAGTCTCCACAGCAACTGGCAAATCGGC  650

seq1  GAGGCCATACTGCAGAGATGCCAGTGTGCTGCAGCC-GGGAAAGAGGAAG  698
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGCCATACTGCAGAGATGCCAGTGTGCTGCAGCCGGGGAAAGAGGAAG  700

seq1  TGTGGTCCCAG-CCAGCCGTGGAGGGCCTACCACGT-GGAGGAGGAGGT-  745
      ||| ||||||| |||||||||||||||||||||||| |||||||||||| 
seq2  TGTTGTCCCAGCCCAGCCGTGGAGGGCCTACCACGTGGGAGGAGGAGGTG  750

seq1  GGGGAAGGAAA  756
      |||||||||||
seq2  GGGGAAGGAAA  761

seq1: chr13_38073068_38073801
seq2: B6Ng01-004L19.g_69_803 (reverse)

seq1  GGCAGCACGGTGCTTTCATGAAGGGTCTCCTTCTGAAGACTTCTCATGCC  50
      |||||| ||||| ||||||||| ||||||||||||||||||| |||||||
seq2  GGCAGCTCGGTGATTTCATGAAAGGTCTCCTTCTGAAGACTTATCATGCC  50

seq1  TGGCTCAATTCCACTCAGAAGAG-CCACTTCAGCTAACCTTCTCAACAGT  99
      ||||||||||||||||||||||| ||||||||| | ||||||||||||||
seq2  TGGCTCAATTCCACTCAGAAGAGCCCACTTCAGAT-ACCTTCTCAACAGT  99

seq1  GGCTCGGGTTAGGCAGCAGGCAGGCGAGAGCAGTCTTTAAGACTCTACAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGGGTTAGGCAGCAGGCAGGCGAGAGCAGTCTTTAAGACTCTACAG  149

seq1  ACATTTGTTTTGGGGGAAAATAG-TTTCAAAACTACCTTAACAGCAGAAA  198
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACATTTGTTTTGGGGGAAAATAGTTTTCAAAACTACCTTAACAGCAGAAA  199

seq1  AAAGCATGGTGTTTAAACAAAAAGTAATCACATATATGTGTCACGACTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGGTGTTTAAACAAAAAGTAATCACATATATGTGTCACGACTTT  249

seq1  CTCAGCTATGGAAGACGAACATTTACCATTACTGCCTATTCAGGGTGGGC  298
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCAGCTATGGAAGACGAACATTTACCATTACAGCCTATTCAGGGTGGGC  299

seq1  GAAAACCTAAGGAAGAAATGTAACTCAAACTACCTAAGTCAAAATGCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTAAGGAAGAAATGTAACTCAAACTACCTAAGTCAAAATGCTTT  349

seq1  ATTTTTCCAGAGAAAACTTTAAACTCTAGGTGGAGAAAAAGAATCATGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCAGAGAAAACTTTAAACTCTAGGTGGAGAAAAAGAATCATGAA  399

seq1  TGAAAAATACCCCTCATATCATATACCAGAAAACAAGACAGAGTGCCTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATACCCCTCATATCATATACCAGAAAACAAGACAGAGTGCCTCC  449

seq1  ACCACCCATTTACAACCTGCTAAGCAACCAAGCCATCTCACCTCGGGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCATTTACAACCTGCTAAGCAACCAAGCCATCTCACCTCGGGAAA  499

seq1  ACTGCAACAGTGGGATTCTCCTGGTGTTTAGTGTTACCAACACTCAGATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAACAGTGGGATTCTCCTGGTGTTTAGTGTTACCAACACTCAGATC  549

seq1  CATCTTCCTTCCCTGCCTCAGACAACATCACAGGCTACCCCTCACCTAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCTTCCCTGCCTCAGACAACATCACAGGCTACCCCTCACCTAGG  599

seq1  AGTTCATGGAAGCTAACTTCAGCTCACTATTGTTTGGTTTTGGAGAGCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGGAAGCTAACTTCAGCTCACTATTGTTTGGTTTTGGAGAGCCC  649

seq1  AGGAGGGCTCCCAAAATGTGATTCCTCTGCCTCAGCCTTTTTAGTCCTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCTCCCAAAATGTGATTCCTCTGCCTCAGCCTTTTTAGTCCTGA  699

seq1  AATTAGGGCATTTACCATCACACCTGACCTGAATTC  734
      ||||||||||||||||||||||| ||||||||||||
seq2  AATTAGGGCATTTACCATCACACATGACCTGAATTC  735