BAC Information

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BAC

Clone NameB6Ng01-005D04
Chromosome13 (Build37)
Map Location 15,855,445 - 15,856,355
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665099, LOC670994, EG625121, Gli3
Downstream geneLOC665157, Inhba, LOC625181, LOC665191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D04.bB6Ng01-005D04.g
ACCDH842400DH842401
length1,217917
definitionDH842400|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D04, 5' end.DH842401|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgcttagctctgtaccccacttaatcaggttatttggttttc
tggagtctgaattcttaagttctttgtatattttggatattagccctcaa
ttagatgtatggttgggaaagatcttttcccaatctgtgagtttcagttt
tgctgtattgacaatgtcctttgccttacagaagcttttcatttttatga
gcaaacatttagcaattgttgatcttagagcataagccattggtgttcta
ttcagaaaatttttccctgtgccaatgtgttccaggttctttcccacttt
ctcttcaattagattcagcatatatggttttatgtggaggtcatttatgc
acttggaattgagctttgtagaaggagataagaatagatcaatttgcaat
tttctacatgctgactgccagttggaccaacaccttttgttgaaaattct
gccttttttctccccacttgaaggttttggcctctttgtcaaagatcaag
tgaccataggtgtgtagggtgatttctgggtcttcaattctattcaattg
atttacatgcctgtttctatactgatacccttccatttttatcactattg
ctttgagtacagcatgatatcagggatggtggttctccccaaaactctct
tattgttgagaatggttttcaatatcttgcttttatttttgttattccaa
atgaatatgataattgctctttctatctctgtgaagaattgagttggaaa
tttgatggagattgcattaaatctgtgaagacttcttatagtttaacaaa
aataaagacacaatataacccaaacttaggggacacaatgaaacagtgct
aagaggaaaactcattagatctgagtgtctccgtaaagaaattggagaaa
agcatatattagtagcttaacagctcatttcaaagctctaggaacaaaag
aagcaaataccccacaagaggagtagatggttgggaataatcaactcagg
gctggaattcaccaagcagaaggaagagactatcaaatcatcgatcagga
gctgtttcttagaacacaagtaaataaacctatcagactactagggcacg
ggacggttctaattaccatcgattaaggaacttacacgaactgagaccta
acctgcgattctcgttaggcctatctacacctgaaatttcgatgaagtga
gatttctaacacggata
gaattcagtgcttggaggcctgtcaagacaacattgatcttatcattcaa
gaggctgggagtggggtagaggtctcaaactctgggaacgcactgtcaat
ccagccatcgctttgagagacatcagcactgagggtgctttatgagagtg
ggggcaaaaagctgtttaatgcaggcagctctgaacattaacgtggtgcc
acgggcaaagtattcagagaagtgtctgcacaaaaactgctgcaaattat
gaacacagggatccaaaggtagctttccttgagtcaggatggaggagaca
agtgacatccaagtgaaggaccagtggaaattaagtacaactgtaaattc
aatcgcagatacaagtttaatagttcttatagccctgttaaagacactca
ggagaaaggaactgtgttgttgtcaatttgactacatttggaatgaactg
taatccagaaatggagggcacacctgcgatccagaccttgagtctggaag
acacaggtttctgatctggatctcgacatgggatgatacttgcttcttat
ccagatcttgaggcacagtggctaagaaacaattaggcccaggcaaggca
gcacacatctctaatctcaggagactgagacaagcaaatatctgagttca
aggccagcctgatacagagctaatttccaaatccaggcatagtggtacac
acctttaatctgggtcgtctcttctgctggagccctccataaagacaata
gaaaaaggaaggctcattctgcctgcttgtacaacagcacagctgttgga
gcccaacttctttagggtttccagctgaaaacagaagacgagctgaaaca
aaggcctcatggggactgagcaactactagattcttgtacatcccatttc
atgggctgcccttgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_15855445_15856355
seq2: B6Ng01-005D04.g_71_987

seq1  GAATTCAGTGCTAGGAGGCCTGTCAAGACAACATTGATCTTATCATTCAA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTTGGAGGCCTGTCAAGACAACATTGATCTTATCATTCAA  50

seq1  GAGGCTGGGAGTGGGGTAGAGGTCTCAAACTCTGGGAACGCACTGTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGGAGTGGGGTAGAGGTCTCAAACTCTGGGAACGCACTGTCAAT  100

seq1  CCAGCCATCGCTTTGAGAGACATCAGCACTGAGGGTGCTTTATGAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCATCGCTTTGAGAGACATCAGCACTGAGGGTGCTTTATGAGAGTG  150

seq1  GGGGCAAAAAGCTGTTTAATGCAGGCAGCTCTGAACATTAACGTGGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAAAAGCTGTTTAATGCAGGCAGCTCTGAACATTAACGTGGTGCC  200

seq1  ACGGGCAAAGTATTCAGAGAAGTGTCTGCACAAAAACTGCTGCAAATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCAAAGTATTCAGAGAAGTGTCTGCACAAAAACTGCTGCAAATTAT  250

seq1  GAACACAGGGATCCAAAGGTAGCTTTCCTTGAGTCAGGATGGAGGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGGGATCCAAAGGTAGCTTTCCTTGAGTCAGGATGGAGGAGACA  300

seq1  AGTGACATCCAAGTGAAGGACCAGTGGAAATTAAGTACAACTGTAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATCCAAGTGAAGGACCAGTGGAAATTAAGTACAACTGTAAATTC  350

seq1  AATCGCAGATACAAGTTTAATAGTTCTTATAGCCCTGTTAAAGACACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCAGATACAAGTTTAATAGTTCTTATAGCCCTGTTAAAGACACTCA  400

seq1  GGAGAAAGGAACTGTGTTGTTGTCAATTTGACTACATTTGGAATGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGGAACTGTGTTGTTGTCAATTTGACTACATTTGGAATGAACTG  450

seq1  TAATCCAGAAATGGAGGGCACACCTGCGATCCAGACCTTGAGTCTGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGAAATGGAGGGCACACCTGCGATCCAGACCTTGAGTCTGGAAG  500

seq1  ACACAGGTTTCTGATCTGGATCTCGACATGGGATGATACTTGCTTCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTTTCTGATCTGGATCTCGACATGGGATGATACTTGCTTCTTAT  550

seq1  CCAGATCTTGAGGCACAGTGGCTAAGAAACAATTAGGCCCAGGCAAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTTGAGGCACAGTGGCTAAGAAACAATTAGGCCCAGGCAAGGCA  600

seq1  GCACACATCTCTAATCTCAGGAGACTGAGACAAGCAAATATCTGAGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATCTCTAATCTCAGGAGACTGAGACAAGCAAATATCTGAGTTCA  650

seq1  AGGCCAGCCTGATACAGAGCTAA-TTCCAAATCCAGGCATAGTGGTACAC  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGCCAGCCTGATACAGAGCTAATTTCCAAATCCAGGCATAGTGGTACAC  700

seq1  ACCTTTAATCTGGGTCGTCTCTTCTGCTGGAGCCCTCCATAAGGACAATA  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACCTTTAATCTGGGTCGTCTCTTCTGCTGGAGCCCTCCATAAAGACAATA  750

seq1  GAAAAAGGAAGGCTCATTCTGCCTGCTTGTACAACAGCACAGCTGTTGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGAAGGCTCATTCTGCCTGCTTGTACAACAGCACAGCTGTTGGA  800

seq1  G-CCAACTTCTTTA-GGATTCCAGCTGAAAACAGAAGACGAGCTGAAACA  847
      | |||||||||||| || ||||||||||||||||||||||||||||||||
seq2  GCCCAACTTCTTTAGGGTTTCCAGCTGAAAACAGAAGACGAGCTGAAACA  850

seq1  AA-GCCTCAT-GGGACTGAGCAACTACTAGATTCTTGTACATCCCA-TTC  894
      || ||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  AAGGCCTCATGGGGACTGAGCAACTACTAGATTCTTGTACATCCCATTTC  900

seq1  AT-GGCTGCCCATTGTTG  911
      || |||||||| |||| |
seq2  ATGGGCTGCCC-TTGTGG  917