This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
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Search Result
BAC
Clone Name
B6Ng01-005D04
Chromosome
13 (Build37)
Map Location
15,855,445 - 15,856,355
singlet/doublet
singlet
Overlap gene
none
Upstream gene
EG665099
,
LOC670994
,
EG625121
,
Gli3
Downstream gene
LOC665157
,
Inhba
,
LOC625181
,
LOC665191
Link
Open Mouse BAC browser
Click to get alignment info.
name
EG665099
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:665099
MGI:3647001
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
LOC670994
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:670994
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 551 ESTs, 13 Proteins
pseudo
: _no_value
name
EG625121
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:625121
MGI:3647197
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs
name
Gli3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14634
MGI:95729
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC665157
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665157
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Inhba
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:16323
MGI:96570
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC625181
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:625181
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 7 Proteins
pseudo
: _no_value
name
LOC665191
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665191
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins
pseudo
: _no_value
name
EG625121
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149263894
GeneID:625121
MGI:3647197
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs
product
: predicted gene, EG625121
transcript_id
: XM_898603.3
name
Gli3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:120953172
GeneID:14634
MGI:95729
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: GLI-Kruppel family member GLI3
transcript_id
: NM_008130.2
name
Inhba
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6680450
GeneID:16323
MGI:96570
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: inhibin beta-A
transcript_id
: NM_008380.1
name
EG625121
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149263895
GeneID:625121
MGI:3647197
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_903696.3
name
Gli3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:120953173
GeneID:14634
MGI:95729
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0017053 - transcriptional repressor complex [Evidence IDA]
GO_function
: GO:0003682 - chromatin binding [Evidence IGI]; GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007420 - brain development [Evidence IMP]; GO:0048754 - branching morphogenesis of a tube [Evidence IMP]; GO:0007417 - central nervous system development [Evidence IMP] [Evidence IGI]; GO:0009953 - dorsal/ventral pattern formation [Evidence IMP]; GO:0048558 - embryonic gut morphogenesis [Evidence IMP]; GO:0030326 - embryonic limb morphogenesis [Evidence IMP] [Evidence IGI]; GO:0030900 - forebrain development [Evidence IMP]; GO:0030324 - lung development [Evidence IGI]; GO:0001656 - metanephros development [Evidence IGI]; GO:0045596 - negative regulation of cell differentiation [Evidence IGI]; GO:0008285 - negative regulation of cell proliferation [Evidence IGI] [Evidence IMP]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0048663 - neuron fate commitment [Evidence IMP]; GO:0045595 - regulation of cell differentiation [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007224 - smoothened signaling pathway [Evidence IGI]; GO:0006350 - transcription [Evidence IEA]; GO:0001658 - ureteric bud branching [Evidence IGI]
codon_start
: 1
note
: extra toes; brachyphalangy; polydactyly Nagoya; anterior digit pattern deformity
product
: GLI-Kruppel family member GLI3
protein_id
: NP_032156.2
name
Inhba
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6680451
CCDS:CCDS26251.1
GeneID:16323
MGI:96570
definition
GO_component
: GO:0005576 - extracellular region [Evidence IEA]
GO_function
: GO:0008083 - growth factor activity [Evidence IEA]; GO:0005179 - hormone activity [Evidence IEA]; GO:0005102 - receptor binding [Evidence IPI]
GO_process
: GO:0040007 - growth [Evidence IEA]
codon_start
: 1
note
: activin
product
: inhibin beta A
protein_id
: NP_032406.1
name
EG665099
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665099
definition
number
: 1
pseudo
: _no_value
name
EG665099
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665099
definition
number
: 2
pseudo
: _no_value
name
EG665099
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665099
definition
number
: 3
pseudo
: _no_value
name
EG665099
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665099
definition
number
: 4
pseudo
: _no_value
name
LOC665157
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665157
definition
number
: 2
pseudo
: _no_value
name
LOC665157
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665157
definition
number
: 1
pseudo
: _no_value
name
LOC665191
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665191
definition
number
: 1
pseudo
: _no_value
name
LOC670994
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149263892
GeneID:670994
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 551 ESTs, 13 Proteins
product
: similar to unnamed protein product
pseudo
: _no_value
transcript_id
: XR_031420.1
name
LOC625181
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149263906
GeneID:625181
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 7 Proteins
product
: similar to ubiquitin-conjugating enzyme E2L 3
pseudo
: _no_value
transcript_id
: XR_031877.1
clone name
MSMg01-174J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290H17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-055F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-234M03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-315K07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484F16
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-391C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-416F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-361M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531A06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-147E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144G11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144G13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146O01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-097K18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-428N12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428L02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-326F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-403C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474I01
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-301K14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-443D07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394O01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089G09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-328B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-432L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-388J22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-499G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-333G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-189C22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-300C14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-412B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-340L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-416I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-086M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-320P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-518K23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-473E10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545C14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-403A05
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-270J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483J12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351H22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-324K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395K07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394E21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399O03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-133A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-462H10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473M07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-323L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139B20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-059H02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061M12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-504F15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431A11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-307K16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-466E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167N05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516A12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-093D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-186L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-156B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-164J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-339G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-346B17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-397I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237E11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-357P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547C24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-199J10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-234N05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-011A08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-004B20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-201C19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-303P12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-235G16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-110N09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-246B15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-179N22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-330G02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-330F19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-239L17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-230A11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-155M21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-056F17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-235K13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-269F17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-308C09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-060M17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-214M15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-162I20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-284G12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-274J08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-199I10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-175G09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-004C11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-321N16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259H06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-228N01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-085H16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-292L21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-256K13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-256M14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-051K17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-163O09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259G19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086G15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-342K07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-256A11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-235J07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-292J14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-205G17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-124E12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-147A01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-257J19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-074H21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-101J09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-159D22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-139G10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-065D08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-262G03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-141J16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-207J02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-005D04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-009F14
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