BAC Information

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BAC

Clone NameB6Ng01-005F06
Chromosome13 (Build37)
Map Location 33,950,015 - 33,950,829
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720
Downstream geneSerpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005F06.bB6Ng01-005F06.g
ACCDH842492DH842493
length1,202817
definitionDH842492|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F06, 5' end.DH842493|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccacctttttcagttctttatatatgtaggatattagtccc
ctatctgatgtaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtatcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggctttttcccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttctactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccaggaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttactttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccaaaatattttatactat
ttgtgactatgagagggtgtgtttccttaatttctttctcagcctgttat
cttctgtagagaagcaatgacttgttgagttatttatatcaactacttca
cgagctgttatcagttagagttcctggtaggattaaggtcacttattaca
tcatatcactgcagaaaggtgatttgacttctctctttccaattgaatcc
tggatctcatttgtgtacatagtccaaaagtcaggagaatatgagtcgac
gc
gaattcttcagctcatgggtctttggaccaggccatgctagccttgctct
gttccctaccctggtgcttctacctggtcatagagtcttaatatgtgacc
ccatttccctgccattcatcactccagtaaatcgactcacacttgtgact
tctcactctcctggaaaaccaaattactgtctgccaaactgaccacaatc
cacctctatttgaagtctgctgtactcaactcttgccacccacttctgtt
caacagggaatcttcatggccccaaaccactcaggtccttaggtcctttt
atagcattagcccttcttctttgtttttaataacccattcctcaacctgt
caggcctctttggcctctcttagctgctggctccttccttccttccttcc
ttccttccttccttccttccttccttcctccttcccccccccctctctct
ctccctctctccctctctctttcttagatattttatttatatttcaaatg
ttatcccctttcctggtttcccctctgaaaaccccttattccctccccca
tccccctgctcaccaacccacctactcttgcttcctggccctggcattcc
cctacactggggcatgaagccttcacaggaccaagggcctctcctcccat
tgatgtctgacaaggcattctctgctacatatgtagttggagccatgggt
ccctccatgtttacttctttgggtggtggtgtaatccctgggagctctgg
gggatactgggttggttcatattgtgttcctctgctgaggctgcaaaccc
tttcagctccttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_33950015_33950829
seq2: B6Ng01-005F06.g_67_883 (reverse)

seq1  AACCCAAGGAGCTGAAAGGGTTTGCAGCCTCAGAAGAGGAACAACAATAT  50
      || |||||||||||||||||||||||||||||| |||||||| |||||||
seq2  AAACCAAGGAGCTGAAAGGGTTTGCAGCCTCAGCAGAGGAAC-ACAATAT  49

seq1  GAACCAA-CCAGTAT-CCCCAGAGCTCCCAGGGATTACACCACCAACCAA  98
      ||||||| ||||||| ||||||||||||||||||||||||||||| ||||
seq2  GAACCAACCCAGTATCCCCCAGAGCTCCCAGGGATTACACCACCACCCAA  99

seq1  AG-AGTAAACATGGAGGGACCCATGGCTCCAACTACATATGTAGCAGAGA  147
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAACATGGAGGGACCCATGGCTCCAACTACATATGTAGCAGAGA  149

seq1  ATGCCTTGTCAGACATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTGTCAGACATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGC  199

seq1  TTCATGCCCCAGTGTAGGGGAATGCCAGGGCCAGGAAGCAAGAGTAGGTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCCCAGTGTAGGGGAATGCCAGGGCCAGGAAGCAAGAGTAGGTG  249

seq1  GGTTGGTGAGCAGGGGGATGGGGGAGGGAATAAGGGGTTTTCAGAGGGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTGAGCAGGGGGATGGGGGAGGGAATAAGGGGTTTTCAGAGGGGA  299

seq1  AACCAGGAAAGGGGATAACATTTGAAATATAAATAAAATATCTAAGAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGAAAGGGGATAACATTTGAAATATAAATAAAATATCTAAGAAAG  349

seq1  AGAGAGGGAGAGAGGGAGAGAGAGAGGGGGGGGGGAAGGAGGAAGGAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGAGAGAGGGAGAGAGAGAGGGGGGGGGGAAGGAGGAAGGAAGG  399

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGCCAGCAGCTAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGCCAGCAGCTAAG  449

seq1  AGAGGCCAAAGAGGCCTGACAGGTTGAGGAATGGGTTATTAAAAACAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAAAGAGGCCTGACAGGTTGAGGAATGGGTTATTAAAAACAAAG  499

seq1  AAGAAGGGCTAATGCTATAAAAGGACCTAAGGACCTGAGTGGTTTGGGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGCTAATGCTATAAAAGGACCTAAGGACCTGAGTGGTTTGGGGC  549

seq1  CATGAAGATTCCCTGTTGAACAGAAGTGGGTGGCAAGAGTTGAGTACAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATTCCCTGTTGAACAGAAGTGGGTGGCAAGAGTTGAGTACAGC  599

seq1  AGACTTCAAATAGAGGTGGATTGTGGTCAGTTTGGCAGACAGTAATTTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAAATAGAGGTGGATTGTGGTCAGTTTGGCAGACAGTAATTTGG  649

seq1  TTTTCCAGGAGAGTGAGAAGTCACAAGTGTGAGTCGATTTACTGGAGTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGGAGAGTGAGAAGTCACAAGTGTGAGTCGATTTACTGGAGTGA  699

seq1  TGAATGGCAGGGAAATGGGGTCACATATTAAGACTCTATGACCAGGTAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCAGGGAAATGGGGTCACATATTAAGACTCTATGACCAGGTAGA  749

seq1  AGCACCAGGGTAGGGAACAGAGCAAGGCTAGCATGGCCTGGTCCAAAGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGGGTAGGGAACAGAGCAAGGCTAGCATGGCCTGGTCCAAAGAC  799

seq1  CCATGAGCTGAAGAATTC  815
      ||||||||||||||||||
seq2  CCATGAGCTGAAGAATTC  817