BAC Information

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BAC

Clone NameB6Ng01-005J11
Chromosome13 (Build37)
Map Location 6,598,497 - 6,599,432
singlet/doubletsinglet
Overlap genePfkp
Upstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1
Downstream geneLOC100039532, LOC667611, EG623516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005J11.g
ACCDH842686
length1,040
definitionDH842686|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatgtttccaggacttttgcctgaatgggtgttggaatttcc
gctggctttcacggagctgagagtgatcctcatggctattaaagctagga
gatagtatagtggacgtataactcagtgggattagtatttgcctaaccac
cctgaggcctctgtaaagtcccccacacttaaacgaaagttcattacttt
gtggccctttctccccattaattccccatttctatctgtttgaagagcaa
aacaatatgtgaaaagcttttgtctctctggccgtaagaatgaacgaggg
ttacaaaggtttccatttccttggaaagacacggttaccacagcaacttt
tataaaagtggacatttaattggggctggtttaccgtttcacaggtttgg
tgatttccagtatgcaagaatcaactccaaccactactgtaccttgcatc
tgtcatatggaagggaagcaatttttagggttttgggctcttatgtcact
gtggctaaagtctgacaagaatcaaatcaacttttctgcttgtttcaata
tcatggcttgtagtgccagatagacagatggggattccccagggtggctt
ccccaggcttctagattgcttctctgtgccatggtgtaggtgctttggtg
gcaaagcctctgtagactggtgattatgtagacagacagactccctagcc
tctgcagagagtcagcccagctgcacgcccatgtatgctttatggaaggc
aacctgggcattgctctgagcagagtggaatgtgtgtgtattgcatataa
tttctatatacttaatattgtattatgcatatatatattacttatacaca
cataatatattaaatacattgtaaacatatacatactcactatatacatg
tgcatatatccgaaggcatgtaatgaggaaaatgaaatttctagaataat
gattacctgagtactgtaagctatacgattctttttccatgagccaccaa
attctttgttggtcgttatgaaaaggacattctgagccca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6598497_6599432
seq2: B6Ng01-005J11.g_190_1108 (reverse)

seq1  TGGGCTACAGAATGTCCTTTCTCATAAAGGCCAA-AAAGAATTGTGCTGG  49
      |||||| ||||||||||||| |||||| | |||| |||||||| || |||
seq2  TGGGCT-CAGAATGTCCTTT-TCATAACGACCAACAAAGAATT-TGGTGG  47

seq1  CTCATGAGAAAAAGAAAATACGTATTAGCTTACAGTTACTCAGTGTAATC  99
      |||||| |||||||||    |||| |||||||||| ||||||| ||||||
seq2  CTCATG-GAAAAAGAA---TCGTA-TAGCTTACAG-TACTCAG-GTAATC  90

seq1  ATTTACTCTTAGAAATTTCCATTTTCCTAATTACATGCCTTTGGATATAT  149
      | ||| || ||||||||| ||||||||| |||||||||||| ||||||||
seq2  A-TTATTC-TAGAAATTT-CATTTTCCTCATTACATGCCTTCGGATATAT  137

seq1  GCACATGTATATATGTGTGTATGTATATGTTTTACAATGTATTTAATATA  199
      ||||||||||||| ||| ||||||||||| ||||||||||||||||||||
seq2  GCACATGTATATA-GTGAGTATGTATATG-TTTACAATGTATTTAATATA  185

seq1  TTTATGTGTGTATAAGTAATATATATATTAAATAATACAATATTAAGTAT  249
       |||||||||||||||||||||||||| |  |||||||||||||||||||
seq2  -TTATGTGTGTATAAGTAATATATATA-TGCATAATACAATATTAAGTAT  233

seq1  ATAGAAATTATATGCAATACACACACATTCCACACTGCTCAGAGCAATGC  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAGAAATTATATGCAATACACACACATTCCACTCTGCTCAGAGCAATGC  283

seq1  CCAGGTTGCCTTCCATAAAGCATACATGGGCCTGCAGCTGGGCTGACTCT  349
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAGGTTGCCTTCCATAAAGCATACATGGGCGTGCAGCTGGGCTGACTCT  333

seq1  CTGCAGAGGCTAGGGAGTCTGTCTGTCTACATAATCACCAGTCTACAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGGCTAGGGAGTCTGTCTGTCTACATAATCACCAGTCTACAGAG  383

seq1  GCTTTGCCACCAAAGCACCAACACCATGGCACAGAGAAGCAATCTAGAAG  449
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTTTGCCACCAAAGCACCTACACCATGGCACAGAGAAGCAATCTAGAAG  433

seq1  CCTGGGGAAGCCACCCTGGGGAATCCCCATCTGTCTATCTGGCACTACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGAAGCCACCCTGGGGAATCCCCATCTGTCTATCTGGCACTACAA  483

seq1  GCCATGATACTGAAACAAGCAGAAAAGTTGATTTGATTCTTCTCAGACAT  549
      ||||||||| ||||||||||||||||||||||||||||||| |||||| |
seq2  GCCATGATATTGAAACAAGCAGAAAAGTTGATTTGATTCTTGTCAGACTT  533

seq1  TAGCCACAGTGACATAAGAGCCCAAAACCCTAAAAATTGCTTCCCTTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACAGTGACATAAGAGCCCAAAACCCTAAAAATTGCTTCCCTTCCA  583

seq1  TATGACAGATGCAAGGTACAGTAGTGGCTGGTGTTGATTCTTGCATCCTG  649
      ||||||||||||||||||||||||||| ||| |||||||||||||| |||
seq2  TATGACAGATGCAAGGTACAGTAGTGGTTGGAGTTGATTCTTGCATACTG  633

seq1  GAAATCACCAAACCTCTGAAACGGTAAACCAGCCCCAATTAAATGTCCAC  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAATCACCAAACCTGTGAAACGGTAAACCAGCCCCAATTAAATGTCCAC  683

seq1  TTTTATAAAAGTTGCTGTGGTAACCGTGTCTTTCCAAGGAAATGGAAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAAAGTTGCTGTGGTAACCGTGTCTTTCCAAGGAAATGGAAACC  733

seq1  TTTGTAACCATCGTTCATTCTTACGGCCAGAGAGACAAAAGCTTTTCACA  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACCCTCGTTCATTCTTACGGCCAGAGAGACAAAAGCTTTTCACA  783

seq1  TATTGTTTTGCTCTTCAAACAGATAGAAATGGGGAATTAATGGGGAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTGCTCTTCAAACAGATAGAAATGGGGAATTAATGGGGAGAAA  833

seq1  GGGCCACAAAGTACTGAACTTCTGTTTAAGTGTGGGGGACTAAACCTGAG  899
      ||||||||||||| |||||||  ||||||||||||||||||  | | |||
seq2  GGGCCACAAAGTAATGAACTTTCGTTTAAGTGTGGGGGACTTTA-CAGAG  882

seq1  GCCTCAGGGCTGCTAGGCAAATACTCTAACCACTGAG  936
      |||||||||  | ||||||||||||    ||||||||
seq2  GCCTCAGGGTGGTTAGGCAAATACTAATCCCACTGAG  919