BAC Information

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BAC

Clone NameB6Ng01-005N03
ChromosomeX (Build37)13 (Build37)
Map Location 139,647,549 - 139,648,01865,551,732 - 65,552,798
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235, Tmem164, Ammecr1, Rgag1, LOC209541
Downstream geneChrdl1, Pak3, Capn6, Dcx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005N03.bB6Ng01-005N03.g
ACCDH842854DH842855
length7581,063
definitionDH842854|Mus musculus domesticus DNA, BAC clone: B6Ng01-005N03, 5' end.DH842855|Mus musculus domesticus DNA, BAC clone: B6Ng01-005N03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(139,647,549 - 139,648,018)(65,551,732 - 65,552,798)
sequence
gaattctctggtggaatttttagggtcactattatatcatctgcaaatag
tgatattttgacttcttcctttccccttgatctctttttgttgtcaaaat
gctctggataggacttcaagtactatattcaataggtagggagaaagtgg
gaagccttgtctaattcctgagtttagtgcgattgcttcgagtttctctc
catttagtttgatgttggccactggtttgctgttgattgcttttattatg
tttaggtatggaccttgaattcctgatctttccatgccttttatcatgaa
tgggtgttggattttgtcaaatgctttctctgtatctaacaagataatca
tgtgattttcgtctttgagtttgtttatatagtggattacattgatggat
ttccgtatattaaaccatccctgcatccctgggataaagcttacttggtc
aggatggatgatcgttttgatgtgttcttggattcagttttcaaggattt
tattgagtatttttgcatcgatattcataagggaaattggtctgaagttc
tctttctttgttggatctttgtgtgatttaggtatcagagtaattgtggc
ttcaaagaatgaactgggtagagtaccttctgtttctattttgtggaata
gtttgaggagagttggaattaggtcttcttttgaaggtctgatagaactc
tgcactaaacccatctggtattgttttttttgctggttttttttttttgt
tgttgttg
gaattcaaactcatgacctttgggagaaccgtttgtgcccttaaccgcta
agctacctgttctcagttcttacatttgaccttttggcgtcatggccgcc
tgaggggacaggaacagatagggaatctgcgcatgctcactcgccggagg
cgggtttaaagtcctgtctcaagtatttttcttttttggaagaaatgaag
attttacttaaactttagaagagatgagaaagaaaacccacgtttcctgg
gaagccgcgagtgagcgccgcagcccccaccaaactcctccccattcacc
gcgccaaactgtggtggaaggccggaagcagaaaccgcgtcacagctttt
attttaattattgttgttgataattaataaagttcaacctctgtctcgcg
gaaacctggaaataaagtttcttcctcggtttataaatgacttccggtgt
ccacagagagaaaacaaagaccgaggatctctaagaggctgtgaaatgaa
tttctaacctggagccagactcgtgatcctgaacagtggaggagtctagc
ctcggctcgggatcggagttctcacctggaagtggggctatctgggaggc
acgtaataaacagacacagactgctttttttgtatgcaagctgacaggcg
gcttttcaaggcttagagtttctctctcactctctgcactcctcactgcc
ttgctcacagctcaaggctgcgctctctgctttctcctgtgtgcttttca
cacacacgcctcacatgctcctcgcacgagcctcacaaacacgtctcaca
catgtttcacatgcctcacactagcctcacacacacacacatacctccaa
cgcctcacacatgcctctcacacatctctcacatgcctcacactagcttc
acagacacacacacacgcctcacacacatacctcacaggcctcacacaca
cgcctcacacatgtcttacatgcctcacactagctcacaacacacacacg
cacacaccacatgcttcaaacatgcctcaacacatgctcatacgcatcca
accacataccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_139647549_139648018
seq2: B6Ng01-005N03.b_287_804

seq1  TTTTTTTATGCTTAGGTATGGGCCTTGAATTCCTGATCTTTCCATGACTT  50
      |||| ||||| |||||||||| |||||||||||||||||||||||| |||
seq2  TTTTATTATGTTTAGGTATGGACCTTGAATTCCTGATCTTTCCATGCCTT  50

seq1  TTATCATGAATGGGTGTTGAATTTTGTCAAATGCTTTCTCCGCATCAAAC  100
      ||||||||||||||||||| |||||||||||||||||||| | ||| |||
seq2  TTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTCTGTATCTAAC  100

seq1  GAGATGATCATGTGATTTTTATCTTTGAGTTTTTTTATATAGTGGATTAC  150
       |||| |||||||||||||  ||||||||||| |||||||||||||||||
seq2  AAGATAATCATGTGATTTTCGTCTTTGAGTTTGTTTATATAGTGGATTAC  150

seq1  GTTGATGGATTTCCACATATTAAACCATCCCTGCATCCCTGGGATGAAGC  200
       |||||||||||||  ||||||||||||||||||||||||||||| ||||
seq2  ATTGATGGATTTCCGTATATTAAACCATCCCTGCATCCCTGGGATAAAGC  200

seq1  CAACTTGGTCATGATGGATGATTGTTTTGATGTGTTCTTGTATTTGGTTT  250
        ||||||||| |||||||||| ||||||||||||||||| |||  ||||
seq2  TTACTTGGTCAGGATGGATGATCGTTTTGATGTGTTCTTGGATTCAGTTT  250

seq1  GTGAGGATTTTATTGAGTATTTTTACATCGATATTCATAAGGGAAATTGG  300
         ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCAAGGATTTTATTGAGTATTTTTGCATCGATATTCATAAGGGAAATTGG  300

seq1  TCTGAAGTTCTCTTTCTTTGTTGGATCTTTGTGTGGTTTAGGTATCAGAG  350
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTGAAGTTCTCTTTCTTTGTTGGATCTTTGTGTGATTTAGGTATCAGAG  350

seq1  TAATTGTGGCTTCATAGAATGAATTGGGTAGAGCAACTTCTGTTTCTATT  400
      |||||||||||||| |||||||| ||||||||| | ||||||||||||||
seq2  TAATTGTGGCTTCAAAGAATGAACTGGGTAGAGTACCTTCTGTTTCTATT  400

seq1  TTGTGGAATAGTTTGA--------GGAAAAAGTTTAACTTTT--------  434
      ||||||||||||||||        ||||  || |   |||||        
seq2  TTGTGGAATAGTTTGAGGAGAGTTGGAATTAGGTCTTCTTTTGAAGGTCT  450

seq1  ------TCTCAGCCTTAA---------------------TT-----TTTT  452
             ||| ||  |||                     ||     ||||
seq2  GATAGAACTCTGCACTAAACCCATCTGGTATTGTTTTTTTTGCTGGTTTT  500

seq1  TTTTTTTTGTTGTTGTTG  470
      ||||||||||||||||||
seq2  TTTTTTTTGTTGTTGTTG  518

seq1: chr13_65551732_65552798
seq2: B6Ng01-005N03.g_70_1132 (reverse)

seq1  TGTGTGTATGTGTGTGTGATGCGTATGAGGCATGTGTTGAGGCATGTGTG  50
      |||| ||||||| ||  ||||||||||| |||||||||||||||||| ||
seq2  TGTG-GTATGTG-GTTGGATGCGTATGA-GCATGTGTTGAGGCATGTTTG  47

seq1  AGGCATGTGGTGTGTGCGTGTGTGTG-TGTGAGGCTAGTGTGAGGCATGT  99
      | |||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  AAGCATGTGGTGTGTGCGTGTGTGTGTTGTGA-GCTAGTGTGAGGCATGT  96

seq1  AAGACATGTGTGAGGCGTGTGTGTGAGGCCTGTGAGGTATGTGTGTGAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGTGTGAGGCGTGTGTGTGAGGCCTGTGAGGTATGTGTGTGAGG  146

seq1  CGTGTGTGGTGTGTCTGTGAAGCTAGTGTGAGGCATGTGAGAGATGTGTG  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGT-GTGTGTCTGTGAAGCTAGTGTGAGGCATGTGAGAGATGTGTG  195

seq1  AGAGGCATGTGTGAGGCGTTGGAGGTATGTGTGTGTGTGTGAGGCTAGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATGTGTGAGGCGTTGGAGGTATGTGTGTGTGTGTGAGGCTAGTG  245

seq1  TGAGGCATGTGAAACATGTGTGAGACGTGTTTGTGAGGCTCGTGCGAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATGTGAAACATGTGTGAGACGTGTTTGTGAGGCTCGTGCGAGGA  295

seq1  GCATGTGAGGCGTGTGTGTGAAAAGCACACAGGAGAAAGCAGAGAGCGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAGGCGTGTGTGTGAAAAGCACACAGGAGAAAGCAGAGAGCGCA  345

seq1  GCCTTGAGCTGTGAGCAAGGCAGTGAGGAGTGCAGAGAGTGAGAGAGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAGCTGTGAGCAAGGCAGTGAGGAGTGCAGAGAGTGAGAGAGAAA  395

seq1  CTCTAAGCCTTGAAAAGCCGCCTGTCAGCTTGCATACAAAAAAAGCAGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGCCTTGAAAAGCCGCCTGTCAGCTTGCATACAAAAAAAGCAGTC  445

seq1  TGTGTCTGTTTATTACGTGCCTCCCAGATAGCCCCACTTCCAGGTGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTTTATTACGTGCCTCCCAGATAGCCCCACTTCCAGGTGAGAA  495

seq1  CTCCGATCCCGAGCCGAGGCTAGACTCCTCCACTGTTCAGGATCACGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGATCCCGAGCCGAGGCTAGACTCCTCCACTGTTCAGGATCACGAGT  545

seq1  CTGGCTCCAGGTTAGAAATTCATTTCACAGCCTCTTAGAGATCCTCGGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCAGGTTAGAAATTCATTTCACAGCCTCTTAGAGATCCTCGGTC  595

seq1  TTTGTTTTCTCTCTGTGGACACCGGAAGTCATTTATAAACCGAGGAAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCTCTCTGTGGACACCGGAAGTCATTTATAAACCGAGGAAGAA  645

seq1  ACTTTATTTCCAGGTTTCCGCGAGACAGAGGTTGAACTTTATTAATTATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTTCCAGGTTTCCGCGAGACAGAGGTTGAACTTTATTAATTATC  695

seq1  AACAACAATAATTAAAATAAAAGCTGTGACGCGGTTTCTGCTTCCGGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATAATTAAAATAAAAGCTGTGACGCGGTTTCTGCTTCCGGCCT  745

seq1  TCCACCACAGTTTGGCGCGGTGAATGGGGAGGAGTTTGGTGGGGGCTGCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACAGTTTGGCGCGGTGAATGGGGAGGAGTTTGGTGGGGGCTGCG  795

seq1  GCGCTCACTCGCGGCTTCCCAGGAAACGTGGGTTTTCTTTCTCATCTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCACTCGCGGCTTCCCAGGAAACGTGGGTTTTCTTTCTCATCTCTT  845

seq1  CTAAAGTTTAAGTAAAATCTTCATTTCTTCCAAAAAAGAAAAATACTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTTTAAGTAAAATCTTCATTTCTTCCAAAAAAGAAAAATACTTGA  895

seq1  GACAGGACTTTAAACCCGCCTCCGGCGAGTGAGCATGCGCAGATTCCCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACTTTAAACCCGCCTCCGGCGAGTGAGCATGCGCAGATTCCCTA  945

seq1  TCTGTTCCTGTCCCCTCAGGCGGCCATGACGCCAAAAGGTCAAATGTAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTGTCCCCTCAGGCGGCCATGACGCCAAAAGGTCAAATGTAAG  995

seq1  AACTGAGAACAGGTAGCTTAGCGGTTAAGGGCACAAACGGTTCTCCCAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAACAGGTAGCTTAGCGGTTAAGGGCACAAACGGTTCTCCCAAA  1045

seq1  GGTCATGAGTTTGAATTC  1067
      ||||||||||||||||||
seq2  GGTCATGAGTTTGAATTC  1063