BAC Information

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BAC

Clone NameB6Ng01-005N21
Chromosome13 (Build37)
Map Location 64,233,634 - 64,369,612
singlet/doubletdoublet
Overlap geneZfp367, Habp4, Cdc14b
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2
Downstream gene1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005N21.bB6Ng01-005N21.g
ACCDH842885DH842886
length1,084909
definitionDH842885|Mus musculus domesticus DNA, BAC clone: B6Ng01-005N21, 5' end.DH842886|Mus musculus domesticus DNA, BAC clone: B6Ng01-005N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,368,515 - 64,369,612)(64,233,634 - 64,234,554)
sequence
gaattcaggcggttaggcttgggcagcaagcacctttactgatctaccca
tcttcccagccatgtgtgtgttttaaataatttcaagtgattatctaaag
ataatatgacccttcactttcccaagaggatgccatcaaatgctggagat
tagagatttgggcaaatggatggtctctgtttaataaagctgtgactgcc
caacttttcctttttccaacagatacaactgcttcatagttgtataaaaa
ttactcggcacgctggacatttgccagctcatcccttgccacttaggcaa
gcaggcatgtgatgacggtctcttggtgaacagtacctgcaaatcgaatt
tagaactgagaaactagtgaatttggacaaatacacaacacaaatacagt
atgcaggtcgtcctccatgcgtgctgtttcccaaattgaccactagcacg
ggcccaactttcggacacgtcatttattcaataatgcccattgaatacta
tcctcaggtgctagaaataaagacccggtaccaggacatctctgttctcc
tgtatttgtttttgtgttgagaaaacagaacttggaaggtgagggtgaga
gacaggggatggcaatcgagtgctgtgcttgaaatctgcggggcaggttt
tgaagagcgaggtctcaggccaagcttttgggaggctgaaggactcagga
ggaaccttacttggtctctgccagtcacttggactgattgttcacaacct
tctggagccccgattctccagtgtgtcaaagatgaaataaagggacatgc
atggcctggtcttcaaatgcctggattgaggctccagggttacccaggta
acaatggtggggtggcaccgggtgacagcagtgagtggaggtcattctgc
tcgaagctcctcccagctgagaggcgcacagtccctctcgtgaatcagca
ctgaggcagtgagtgcagtgagctgacagctctcagctgctacactgctt
gcacacgatgcatcagagtcagcgatgagcagcttcagagacacgagtgt
tctttaagactcaagagcacagtactcaaagctc
gaattccaggcatgtcagggttacaaagtgagaccctatttcaaaccata
attttaaagaaacagtaattcatactatgctttaaaaaaaagcctgaagg
ctgggtacatgatgtagctcagcagtaggatgcttgcatagtgtatatga
tactctgaagtcaacccacaacctcaaaaaagctgtctgagacaactgag
acaaagaatgtcaggttgagggttgtttctttcttttttttttggatcta
tccaatcatatctatctatctatctatctatctatctatctatctatcta
tctatctatctatctatctatctatctatctatctatctatccatccatc
catccatccatccatccatccatccatccatccatccatccatccatcca
tccatctatctatctatctatctatctatctatctatctatctatctatc
tatcatggtttttgtatttttgatagagaaacaaatgataaaaactgtaa
gaataaagccgggcatggtggcgcacgcctttaatcccagcactcgggag
gcagaggcaagtggatctcttgagttcgaggccagcctggtctacaaagt
gagttccaggacagccagggctatacagagaaaccctgtctcgaaaacca
agaagaaaaaaaaaaaaaaaaaactgtaagaatgacccatgtactttatg
ctttaaattaaaataaaattttattcaaagcatcttttaaattacagcat
gttattaatatgctgttcactctgccaaactacaacttagccatatgaag
cataaacacttcaaaatctgaatgtaaccacattttaaacagaaagcagt
catacacactctaattttagatgcatgtagtttgtcagtactagctatat
caaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64368515_64369612
seq2: B6Ng01-005N21.b_48_1131 (reverse)

seq1  GAGCTTTGGTGTACTGGTGCTCTTTGAAGTCTTTAAAGGACACTCGGTGT  50
      ||||||| | ||||| ||||||||   |||| |||||| |||||| ||||
seq2  GAGCTTT-GAGTACT-GTGCTCTT--GAGTC-TTAAAGAACACTC-GTGT  44

seq1  CTCTGAAGGCTGGCCTCATCGCTGACTCTGATGCATCGTGTGCCAGCAGT  100
      ||||||| ||||  ||||||||||||||||||||||||||||| ||||||
seq2  CTCTGAA-GCTG--CTCATCGCTGACTCTGATGCATCGTGTGCAAGCAGT  91

seq1  GTAGCAGCTGAGAGCTGTCAGCTCAACTGCACTCACTGCCTCAGTGCTGA  150
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGCAGCTGAGAGCTGTCAGCTC-ACTGCACTCACTGCCTCAGTGCTGA  140

seq1  TTCACGGAGAGGGGACTGTGCGCCTCTCAGCTGGGAGGAGCCTTCGAGCA  200
      ||||| |||| ||||||||||||||||||||||||||||| |||||||||
seq2  TTCAC-GAGA-GGGACTGTGCGCCTCTCAGCTGGGAGGAG-CTTCGAGCA  187

seq1  GAATGACCTCCACCTCACTGCTGTCACCCGGTGCCACCCCACCATTGTTA  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATGACCTCCA-CTCACTGCTGTCACCCGGTGCCACCCCACCATTGTTA  236

seq1  CCTGGGTAACCCTGGAGCCTCAATCCAGGCATTTGAAGACCAGGCCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTAACCCTGGAGCCTCAATCCAGGCATTTGAAGACCAGGCCATGC  286

seq1  ATGTCCCTTTATTTCATCTTTGACACACTGGAGAATCGGGGCTCCAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTTTATTTCATCTTTGACACACTGGAGAATCGGGGCTCCAGAAG  336

seq1  GTTGTGAACAATCAGTCCAAGTGACTGGCAGAGACCAAGTAAGGTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAACAATCAGTCCAAGTGACTGGCAGAGACCAAGTAAGGTTCCTC  386

seq1  CTGAGTCCTTCAGCCTCCCAAAAGCTTGGCCTGAGACCTCGCTCTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCTTCAGCCTCCCAAAAGCTTGGCCTGAGACCTCGCTCTTCAAA  436

seq1  ACCTGCCCCGCAGATTTCAAGCACAGCACTCGATTGCCATCCCCTGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCCGCAGATTTCAAGCACAGCACTCGATTGCCATCCCCTGTCTC  486

seq1  TCACCCTCACCTTCCAAGTTCTGTTTTCTCAACACAAAAACAAATACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCACCTTCCAAGTTCTGTTTTCTCAACACAAAAACAAATACAGG  536

seq1  AGAACAGAGATGTCCTGGTACCGGGTCTTTATTTCTAGCACCTGAGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAGATGTCCTGGTACCGGGTCTTTATTTCTAGCACCTGAGGATA  586

seq1  GTATTCAATGGGCATTATTGAATAAATGACGTGTCCGAAAGTTGGGCCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAATGGGCATTATTGAATAAATGACGTGTCCGAAAGTTGGGCCCG  636

seq1  TGCTAGTGGTCAATTTGGGAAACAGCACGCATGGAGGACGACCTGCATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGGTCAATTTGGGAAACAGCACGCATGGAGGACGACCTGCATAC  686

seq1  TGTATTTGTGTTGTGTATTTGTCCAAATTCACTAGTTTCTCAGTTCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTGTTGTGTATTTGTCCAAATTCACTAGTTTCTCAGTTCTAAA  736

seq1  TTCGATTTGCAGGTACTGTTCACCAAGAGACCGTCATCACATGCCTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATTTGCAGGTACTGTTCACCAAGAGACCGTCATCACATGCCTGCTT  786

seq1  GCCTAAGTGGCAAGGGATGAGCTGGCAAATGTCCAGCGTGCCGAGTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGTGGCAAGGGATGAGCTGGCAAATGTCCAGCGTGCCGAGTAATT  836

seq1  TTTATACAACTATGAAGCAGTTGTATCTGTTGGAAAAAGGAAAAGTTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACAACTATGAAGCAGTTGTATCTGTTGGAAAAAGGAAAAGTTGGG  886

seq1  CAGTCACAGCTTTATTAAACAGAGACCATCCATTTGCCCAAATCTCTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAGCTTTATTAAACAGAGACCATCCATTTGCCCAAATCTCTAAT  936

seq1  CTCCAGCATTTGATGGCATCCTCTTGGGAAAGTGAAGGGTCATATTATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCATTTGATGGCATCCTCTTGGGAAAGTGAAGGGTCATATTATCT  986

seq1  TTAGATAATCACTTGAAATTATTTAAAACACACACATGGCTGGGAAGATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAATCACTTGAAATTATTTAAAACACACACATGGCTGGGAAGATG  1036

seq1  GGTAGATCAGTAAAGGTGCTTGCTGCCCAAGCCTAACCGCCTGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATCAGTAAAGGTGCTTGCTGCCCAAGCCTAACCGCCTGAATTC  1084

seq1: chr13_64233634_64234554
seq2: B6Ng01-005N21.g_70_978

seq1  GAATTCCAGGCATGTCAGGGTTACAAAGTGAGACCCTATTTCAAACCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCATGTCAGGGTTACAAAGTGAGACCCTATTTCAAACCATA  50

seq1  ATTTTAAAGAAACAGTAATTCATACTATGCTTTAAAAAAAAGCCTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGAAACAGTAATTCATACTATGCTTTAAAAAAAAGCCTGAAGG  100

seq1  CTGGGTACATGATGTAGCTCAGCAGTAGGATGCTTGCATAGTGTATATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTACATGATGTAGCTCAGCAGTAGGATGCTTGCATAGTGTATATGA  150

seq1  TACTCTGAAGTCAACCCACAACCTCAAAAAAGCTGTCTGAGACAACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGAAGTCAACCCACAACCTCAAAAAAGCTGTCTGAGACAACTGAG  200

seq1  ACAAAGAATGTCAGGTTGAGGGTTGTTTCTTTCTTTTTTTTTTGGATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAATGTCAGGTTGAGGGTTGTTTCTTTCTTTTTTTTTTGGATCTA  250

seq1  TCCAATCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  300

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATC  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCATC  350

seq1  CATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCA  400

seq1  TCC----ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  446
      |||    |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  450

seq1  TATCATGGTTTTTGTATTTTTGATAGAGAAACAAATGATAAAAACTGTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGTTTTTGTATTTTTGATAGAGAAACAAATGATAAAAACTGTAA  500

seq1  GAATAAAGCCGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGCCGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAG  550

seq1  GCAGAGGCAAGTGGATCTCTTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAAGTGGATCTCTTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  600

seq1  GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACC  646
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCG-AAAACC  649

seq1  AAGAAGAAAAAAAAAAAAAAAAAAACTGTAAGAATGACCCATGTACTTTA  696
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAG-AAAAAAAAAAAAAAAAAACTGTAAGAATGACCCATGTACTTTA  698

seq1  TGCTTTAAATTAAAATAAAATTTTATTCAAAGCATCTTTTAAAATTACAG  746
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCTTTAAATTAAAATAAAATTTTATTCAAAGCATCTTTT-AAATTACAG  747

seq1  CATGTTTATTAATATGCTGTTAACTCTGCCAAACTACAACTTAGCCATAT  796
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATG-TTATTAATATGCTGTTCACTCTGCCAAACTACAACTTAGCCATAT  796

seq1  GAAGCATAAAACACTTCAAAAATCTGAATGTAACCACATTTTTAAAACAA  846
      ||||||| ||||||||| ||||||||||||||||||||||||  ||||| 
seq2  GAAGCAT-AAACACTTC-AAAATCTGAATGTAACCACATTTT--AAACAG  842

seq1  AAAGCAGTCATAACACACCTCAAATTTTAGATGCCAATGTATTTTGTCCA  896
      ||||||||||| ||||| ||| ||||||||||||  ||||| ||||||  
seq2  AAAGCAGTCAT-ACACA-CTCTAATTTTAGATGC--ATGTAGTTTGTC--  886

seq1  AGTACATAGCTTATATCAAAACAAA  921
      ||||| |||| ||||||||||||||
seq2  AGTAC-TAGC-TATATCAAAACAAA  909