BAC Information

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BAC

Clone NameB6Ng01-008F17
Chromosome16 (Build37)13 (Build37)
Map Location 64,249,976 - 64,251,107117,275,454 - 117,275,549
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008F17.bB6Ng01-008F17.g
ACCDH844639DH844640
length1,124704
definitionDH844639|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F17, 5' end.DH844640|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,249,976 - 64,251,107)(117,275,454 - 117,275,549)
sequence
gaattcttcagggtggtaagttatgtttcatgtaatgacagttcctctct
ctgaatctagtcagctctcagtagatgtgtttcaaattaatagagcatta
gtccctaatcaagaaagtatttaggaatacgtttttaattaaaatgaact
atggggaggaataagaagtgttgggctttttgtgttaatttgacatagta
cattgctcatgtatctgtgcattattaaagattaggctattggttatttc
tctaaatccaatataaaaattaaagcaaataaaatgcagatttaataaac
acacagaaagcttgcattcacagaggctggatacaaacaagatcagaagg
tagatccttccttgtaggcaggcagtgtttcagtcaacacatttgctttc
ttccaagcaacagacactatagggcaaacataggaaccaacctttaatta
aagggtttgtagtttctctttgtagttttattatcttttccatcaacaaa
ttctttaatgagatagttttcagtatcactctttaggcctttgacatatt
aattgaatgtaagataaaacactgtaggtgcaagaaaacatgaggtgcga
gcatcataatagtacatgttttttcaggggtgatagcacagtcaatggga
gtttgtagaacatttgcaaatcataaatttgataagggattaatatcttt
ggataggcagagagctcctctaaacagcaacaaacaactacatatcaaaa
ataggtaaagtttagactacaaaatttccaaggaaggcacaagatagcaa
gtaaacatgaaaagctttctaacatcatcactctttaagagataacatgc
taaatgaatgtgatccccattttacatatcaagatagctactatggagag
ccactgggtgtgggtcaaaatgtagacaattgagatcccttgtccactta
gtggtatgtgaaatggtacatctttgtagagatacagtgggatattcttt
aaaataataaaacagataatacatgattaggtgtagccacttctggagat
tttctgaaggtcttagaaggcttgcacacctacccaccagccctggcagc
attagtctgtacagcgaaatgtgg
gaattctatgtttagctctgtatcccattttttaaaaatttttattggtt
attttatttatttgcatttctaatgttatcccccttcccagttttctctc
caaaaagcccacatcccacctctcttcccatcttcctccatgacggtgcc
tcctactcaccaactcactcctgccccaccaccctagcattcccctatgc
tgtggcatcaagccttctcaggactaaggggctcccatttctttgatggc
agacaaggccatcctctgccacatatgtagctggagccataggtccctcc
atgtgtatctttggttggttgtttactacctgggagctctggggagtcta
gttgattgatattgttgttcttcttatggggttgcaaaccccttcagctc
cttcagtcctttccctaactcctctactggtatccccctgctcagtcatg
ttattttgattgttggtgtcttacttcttcagttcttcatatgttttaga
tattagcccactggcagatgcaaggttactgtaggctgttggtttgtcct
aatgatagtgagtgtcctttgacttacggaagcttttcagtttcatgaga
tcccatttattaattctttttttctttctttctttctttctttctttctt
tctttctttctttctttctttctttctttcatttctttctcactctctct
ctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_64249976_64251107
seq2: B6Ng01-008F17.b_47_1170 (reverse)

seq1  CCACATTTTTGCTGTCATGACTAATGCTGCTAGTGCTGGTGTGTAGGTGT  50
      ||||| ||| |||||   |||||||||||| || ||||||| ||||||||
seq2  CCACA-TTTCGCTGTACAGACTAATGCTGCCAGGGCTGGTGGGTAGGTGT  49

seq1  GCCAAGACCTCTCTAAGACCTTCAGAAAAATCTCCAGAAGTGGCTACACT  100
      | |||| ||| |||||||||||||| ||||||||||||||||||||||| 
seq2  G-CAAG-CCT-TCTAAGACCTTCAG-AAAATCTCCAGAAGTGGCTACACC  95

seq1  AAATCATGTATAATTCTGTTTTTATTATTTT-AAGAATAT-CCACTGTAT  148
       |||||||||| | |||| |||||||||||| |||||||| |||||||| 
seq2  TAATCATGTATTA-TCTG-TTTTATTATTTTAAAGAATATCCCACTGTA-  142

seq1  TCTCTACAAAAGATGTACCATTTCACATTACCACTAAGTGGACAAGGGAT  198
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTCTAC-AAAGATGTACCATTTCACA-TACCACTAAGTGGACAAGGGAT  190

seq1  CTCAATTTGTCTACATTTTGACCCACACCCAGTGGCTCTCCATAGTAGCT  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAA-TTGTCTACATTTTGACCCACACCCAGTGGCTCTCCATAGTAGCT  239

seq1  ATCTTGATATGTAAAATGGGGATCACATTCATTTAGCATGTTATCTCTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATATGTAAAATGGGGATCACATTCATTTAGCATGTTATCTCTTA  289

seq1  AAGAGTGATGATGTTAGAAAGCTTTTCATGTTTACTTGCTATCTTGTGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGATGATGTTAGAAAGCTTTTCATGTTTACTTGCTATCTTGTGCC  339

seq1  TTCCTTGGAAATTTTGTAGTCTAAACTTTACCTATTTTTGATATGTAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGAAATTTTGTAGTCTAAACTTTACCTATTTTTGATATGTAGTT  389

seq1  GTTTGTTGCTGTTTAGAGGAGCTCTCTGCCTATCC-AAGATATTAATCCC  447
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTTGTTGCTGTTTAGAGGAGCTCTCTGCCTATCCAAAGATATTAATCCC  439

seq1  TTATCAAATTTATGATTTGCAAATGTTCTACAAACTCCCATTGACTGTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAATTTATGATTTGCAAATGTTCTACAAACTCCCATTGACTGTGC  489

seq1  TATCACCCCTGAAAAAACATGTACTATTATGATGCTCGCACCTCATGTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCCCTGAAAAAACATGTACTATTATGATGCTCGCACCTCATGTTT  539

seq1  TCTTGCACCTACAGTGTTTTATCTTACATTCAATTAATATGTCAAAGGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCACCTACAGTGTTTTATCTTACATTCAATTAATATGTCAAAGGCC  589

seq1  TAAAGAGTGATACTGAAAACTATCTCATTAAAGAATTTGTTGATGGAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTGATACTGAAAACTATCTCATTAAAGAATTTGTTGATGGAAAA  639

seq1  GATAATAAAACTACAAAGAGAAACTACAAACCCTTTAATTAAAGGTTGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAAAACTACAAAGAGAAACTACAAACCCTTTAATTAAAGGTTGGT  689

seq1  TCCTATGTTTGCCCTATAGTGTCTGTTGCTTGGAAGAAAGCAAATGTGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTTTGCCCTATAGTGTCTGTTGCTTGGAAGAAAGCAAATGTGTT  739

seq1  GACTGAAACACTGCCTGCCTACAAGGAAGGATCTACCTTCTGATCTTGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAACACTGCCTGCCTACAAGGAAGGATCTACCTTCTGATCTTGTT  789

seq1  TGTATCCAGCCTCTGTGAATGCAAGCTTTCTGTGTGTTTATTAAATCTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCAGCCTCTGTGAATGCAAGCTTTCTGTGTGTTTATTAAATCTGC  839

seq1  ATTTTATTTGCTTTAATTTTTATATTGGATTTAGAGAAATAACCAATAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTGCTTTAATTTTTATATTGGATTTAGAGAAATAACCAATAGC  889

seq1  CTAATCTTTAATAATGCACAGATACATGAGCAATGTACTATGTCAAATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTTAATAATGCACAGATACATGAGCAATGTACTATGTCAAATTA  939

seq1  ACACAAAAAGCCCAACACTTCTTATTCCTCCCCATAGTTCATTTTAATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAAGCCCAACACTTCTTATTCCTCCCCATAGTTCATTTTAATTA  989

seq1  AAAACGTATTCCTAAATACTTTCTTGATTAGGGACTAATGCTCTATTAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTATTCCTAAATACTTTCTTGATTAGGGACTAATGCTCTATTAAT  1039

seq1  TTGAAACACATCTACTGAGAGCTGACTAGATTCAGAGAGAGGAACTGTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACACATCTACTGAGAGCTGACTAGATTCAGAGAGAGGAACTGTCA  1089

seq1  TTACATGAAACATAACTTACCACCCTGAAGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  TTACATGAAACATAACTTACCACCCTGAAGAATTC  1124

seq1: chr13_117275454_117275549
seq2: B6Ng01-008F17.g_687_771 (reverse)

seq1  AGAGAGAGAGAGAAAGAAAGAAA-GAAAGAAAGAAAGAAAGAAAGAAAGA  49
      ||||||||||||  ||||||||| ||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGTGAGAAAGAAATGAAAGAAAGAAAGAAAGAAAGAAAGA  50

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAA  96
      ||||||||||||||||||||||||||||||||||             
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAA------------  85