BAC Information

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BAC

Clone NameB6Ng01-008G09
Chromosome13 (Build37)
Map Location 114,300,568 - 114,301,569
singlet/doubletsinglet
Overlap genenone
Upstream geneIl31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888
Downstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008G09.bB6Ng01-008G09.g
ACCDH844668DH844669
length1,0021,166
definitionDH844668|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G09, 5' end.DH844669|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgaatttatagccactccaaaattaaaagcttactccgcaca
tgtgttccaataaagttgctttaaaataatcagagaaacaaggggaaata
tttttagggggtacgggtagaagaaaaaagtttgactaaggcttaataat
ttggctaatagagacacggatagatgcaatatgctgtctcttctacttcc
atactggtttaaaagtctccacactgagtcattaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaagccttaacctgttgtctccaaacaggtgcatagctt
tgaacaaatgcttttcttcatgtggtgttaaagcaggtgtcattggttct
gagtttgatctgggtacacgttcttaagtatgccatgccattaaagtggg
aatgaacagctctggtccctcgcctgccataaaacaataccaaaataaat
ggcagccattagtcagtgagcacacagaacccttctctaggcttctcctc
actacactactcttcctccagcttcctttttaattaagaagaattaagca
ttcatttaggaccccaagaaccatgggtgccactcatccttggcacattc
ttcaccattcatccttggcaccccctcctgattatctcctacaataagtc
actctccagttctgctgattttgcttggtttctgtctttgtctgtctgac
cttaggtcttgttgaaggttcagacctctacttcctaacaacagaactat
ttatacttaggttacccttatttgaaccatgtagtacatgttgatgcagc
cacaagatgggtgtatttaatcttgttcatagtatgataacaggcaggaa
ccagttcgctcagattcatcttcctatgacctcccagggagtccatctct
cagtaccacatccgtgtgctaagtttcatgaggaattttaagagggaaca
ccagcattcgaatcgtaatatgaggaatgtggctgtctcattcacatgac
tt
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccatctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
attttcctcagaaaattggacataggactaacagaggatcccgcaatacc
tctcctgggcatatatccagaagatgtcccaactagtaagaaagaaacat
gctccactatgttcatagaagccttatttataatagccagaagctggaaa
gaacccagatgtccctcaacagaggaatggatacaaaatatgtggtacat
ttacacaatggagtactactcagctattaaaaagaatgaatttatgatat
tcctaggcaaatggttggacttggagggcattatcctgagtgaggtaaca
caatcacaaaagaactcaaatgatatgtactcactgataagtggatatta
gcccagaaacttagtatacccgagatataagatacaatttgcaaaacaca
tgaaactgaagaaccaagaccaaagtgtggacactttgccccttcttaga
attgggaacaaaacacccatggaaggagttacagagacaagtttggagct
gagacaaaaggatggaccatctagtgattgccatatccagggatccatcc
cataatcagcctccaacgctgacaccattgcatacactagtaagatttgc
tgaaaggaccctgatatagctgtctcttgtgagactatgccggggtctta
gcaaacacaaagtggatgctcacagtcagctattggatggatccacaggt
ccttcaatgagagctagagaaagtacccaggagctaaagggatctgcatc
tataagtggaacacatatgactaacatactctctaagtttgttctctgtt
gtttatgattaaagaaggctcagttggccttcctgcaaataaagctcctg
gaacttcacactttatgtgctccgtacaggaaatgctctgtccaaaattg
gacatgggtgcgacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_114300568_114301569
seq2: B6Ng01-008G09.b_41_1042

seq1  GAATTCTTTGAATTTATAGCCACTCCAAAATTAAAAGCTTACTCCGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAATTTATAGCCACTCCAAAATTAAAAGCTTACTCCGCACA  50

seq1  TGTGTTCCAATAAAGTTGCTTTAAAATAATCAGAGAAACAAGGGGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCAATAAAGTTGCTTTAAAATAATCAGAGAAACAAGGGGAAATA  100

seq1  TTTTTAGGGGGTACGGGTAGAAGAAAAAAGTTTGACTAAGGCTTAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGGGGTACGGGTAGAAGAAAAAAGTTTGACTAAGGCTTAATAAT  150

seq1  TTGGCTAATAGAGACACGGATAGATGCAATATGCTGTCTCTTCTACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAATAGAGACACGGATAGATGCAATATGCTGTCTCTTCTACTTCC  200

seq1  ATACTGGTTTAAAAGTCTCCACACTGAGTCATTAAAAAAAAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGTTTAAAAGTCTCCACACTGAGTCATTAAAAAAAAAAAAAAAAA  250

seq1  AAAAAAAAAAAAAAGCCTTAACCTGTTGTCTCCAAACAGGTGCATAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGCCTTAACCTGTTGTCTCCAAACAGGTGCATAGCTT  300

seq1  TGAACAAATGCTTTTCTTCATGTGGTGTTAAAGCAGGTGTCATTGGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAATGCTTTTCTTCATGTGGTGTTAAAGCAGGTGTCATTGGTTCT  350

seq1  GAGTTTGATCTGGGTACACGTTCTTAAGTATGCCATGCCATTAAAGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGATCTGGGTACACGTTCTTAAGTATGCCATGCCATTAAAGTGGG  400

seq1  AATGAACAGCTCTGGTCCCTCGCCTGCCATAAAACAATACCAAAATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAGCTCTGGTCCCTCGCCTGCCATAAAACAATACCAAAATAAAT  450

seq1  GGCAGCCATTAGTCAGTGAGCACACAGAACCCTTCTCTAGGCTTCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCATTAGTCAGTGAGCACACAGAACCCTTCTCTAGGCTTCTCCTC  500

seq1  ACTACACTACTCTTCCTCCAGCTTCCTTTTTAATTAAGAAGAATTAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACTACTCTTCCTCCAGCTTCCTTTTTAATTAAGAAGAATTAAGCA  550

seq1  TTCATTTAGGACCCCAAGAACCATGGGTGCCACTCATCCTTGGCACATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAGGACCCCAAGAACCATGGGTGCCACTCATCCTTGGCACATTC  600

seq1  TTCACCATTCATCCTTGGCACCCCCTCCTGATTATCTCCTACAATAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCATTCATCCTTGGCACCCCCTCCTGATTATCTCCTACAATAAGTC  650

seq1  ACTCTCCAGTTCTGCTGATTTTGCTTGGTTTCTGTCTTTGTCTGTCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCAGTTCTGCTGATTTTGCTTGGTTTCTGTCTTTGTCTGTCTGAC  700

seq1  CTTAGGTCTTGTTGAAGGTTCAGACCTCTACTTCCTAACAACAGAACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTCTTGTTGAAGGTTCAGACCTCTACTTCCTAACAACAGAACTAT  750

seq1  TTATACTTAGGTTACCCTTATTTGAACCATGTAGTACATGTTGATGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTAGGTTACCCTTATTTGAACCATGTAGTACATGTTGATGCAGC  800

seq1  CACAAGATGGGTGTA-TTAATC-TGTTCATAGTATGATAACAGGCAGGAA  848
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  CACAAGATGGGTGTATTTAATCTTGTTCATAGTATGATAACAGGCAGGAA  850

seq1  CCAGTTCGCTCAAGATTCATCTTCTAATGACCTCCCA-GGAGTCCATCTC  897
      ||||||||||| ||||||||||||  ||||||||||| ||||||||||||
seq2  CCAGTTCGCTC-AGATTCATCTTCCTATGACCTCCCAGGGAGTCCATCTC  899

seq1  TCAGTACCACCATCCGTGTGCTAAGTTTCAATAGAGGAATTTT-AGAGGG  946
      ||||||||| ||||||||||||||||||||   |||||||||| ||||||
seq2  TCAGTACCA-CATCCGTGTGCTAAGTTTCA--TGAGGAATTTTAAGAGGG  946

seq1  -ACACCAGCATTCGAATCGTAGTAATGAGGAATGTGGCTGTCTCATTCAC  995
       |||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  AACACCAGCATTCGAATCGTAAT-ATGAGGAATGTGGCTGTCTCATTCAC  995

seq1  ATGACTT  1002
      |||||||
seq2  ATGACTT  1002