BAC Information

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BAC

Clone NameB6Ng01-008J07
Chromosome13 (Build37)
Map Location 111,546,422 - 111,547,496
singlet/doubletsinglet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008J07.bB6Ng01-008J07.g
ACCDH844790DH844791
length6621,062
definitionDH844790|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J07, 5' end.DH844791|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gtatgagaggagttggagatgttcagagggtcaggaaattgaacagagtt
gtagcaatgggagatggggagcttggggtagcaaacagaaagtccaagat
gcgaggaaagcaagagccttccaggacccaatggggatgacattagctga
aatgcctccacaaaggggagggggaacccgtcaagaccatatccagaggt
taggcatagtctcccagttgagggatggagccaccgacccatctccaaag
ttttaaacaagaattgttcttgtctacagaaaatacagggacaaaatgtg
taacagagactaaaggaaaagccatccagagattgccccacctggggatc
catcccacatgcagaaaccaaacccagacactattgttgatgccaaaaag
tgcttgctgacaggagcttgatacagctgtcttctgagaggctctgccag
gtcctgaccaattcagatgcagatgcttgcagccaaccaccagactgagc
acagggaccccagtggagaagttaggggaaggactgaagaagctgaagga
gccttatttggcattaatgggaggggaggcccttggctctgtgaaggctt
gatgcccggagtagataaatgctagggcagtgtggcaggaatgggtaggt
ggatgggggagc

gaattcctattctctgccaaactcatcattgtctggaatttcacataatt
gtagatgttagttgctttgagaatcatagttttaagcctaggagaggctc
tagaaatatcattactacattgaattctctcttgctctctcccttcttcc
tcctctcctccctccccctcccctctacctctctacctcctctctctctc
tctgtctctctctctctgtctctctctctctctctctctccttctttctt
ccttttgtgacaagttctcacatggcctaggagagtcaaagaaagtttct
ccttagtggaggataacattgaactcctgaaccttctgtcacgccctctg
tagtgctgggttataggactttgcaaatatgctatagtcaatgacagata
aaatatagacttgaaaatataatgcttggtgagcagaggccaagaatata
ctgtagattatttttctttattaaatctctggtttaaaaaaaaactggcc
ttgcataaatgacccttcacaaaaaaaaattaaagaaaggagtatatttt
gtgccattaggaagctctagctgttcatataaaatggtgttttttctttg
aatggatatttgatgatatcttctgtttaacttattaagtttttaatttt
ggccagtatttttctatttaaaaaacacaaaacaaaacaaaaatcctgaa
agctcaggtagttttggcacccagtggaaatccaaggttcctttgagtga
tacatgggtttcttgatgcttttatcaattttggtggaagctctccagct
ctcttgagatgactttacaaggtcattgcatacagatgactcatcgtgct
gctgctagaaaagaactttgggaataagccatacggagatttgaaagagc
ctggtttctctttatgacagtatgcaatcataaaaaatagccttgacact
aagaaatgagccaggctatagaaaatgaacctgtttatctgatcactata
tacagtttgctcatattatttggtccctaaaataatagttttccccaaat
atgtcaccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111546422_111547496
seq2: B6Ng01-008J07.g_65_1126

seq1  GAATTCCTATTCTCTGCCAAACTCATCATTGTCTGGAATTTCACATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTCTCTGCCAAACTCATCATTGTCTGGAATTTCACATAATT  50

seq1  GTAGATGTTAGTTGCTTTGAGAATCATAGTTTTAAGCCTAGGAGAGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTTAGTTGCTTTGAGAATCATAGTTTTAAGCCTAGGAGAGGCTC  100

seq1  TAGAAATATCATTACTACATTGAATTCTCTCTTGCTCTCTCCCTTCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATATCATTACTACATTGAATTCTCTCTTGCTCTCTCCCTTCTTCC  150

seq1  TCCTCTCCTCCCTCCCCCTCCCCTCTACCTCTCTACCTCCTCTCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTCCCTCCCCCTCCCCTCTACCTCTCTACCTCCTCTCTCTCTC  200

seq1  TCTGTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCCTTCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCCTTCTTTCTT  250

seq1  CCTTTTGTGACAAGTTCTCACATGGCCTAGGAGAGTCAAAGAAAGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTGACAAGTTCTCACATGGCCTAGGAGAGTCAAAGAAAGTTTCT  300

seq1  CCTTAGTGGAGGATAACATTGAACTCCTGAACCTTCTGTCACGCCCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGGAGGATAACATTGAACTCCTGAACCTTCTGTCACGCCCTCTG  350

seq1  TAGTGCTGGGTTATAGGACTTTGCAAATATGCTATAGTCAATGACAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTGGGTTATAGGACTTTGCAAATATGCTATAGTCAATGACAGATA  400

seq1  AAATATAGACTTGAAAATATAATGCTTGGTGAGCAGAGGCCAAGAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGACTTGAAAATATAATGCTTGGTGAGCAGAGGCCAAGAATATA  450

seq1  CTGTAGATTATTTTTCTTTATTAAATCTCTGGTTTAAAAAAAAACTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATTATTTTTCTTTATTAAATCTCTGGTTTAAAAAAAAACTGGCC  500

seq1  TTGCATAAATGACCCTTCACAAAAAAAAATTAAAGAAAGGAGTATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAAATGACCCTTCACAAAAAAAAATTAAAGAAAGGAGTATATTTT  550

seq1  GTGCCATTAGGAAGCTCTAGCTGTTCATATAAAATGGTGTTTTTTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTAGGAAGCTCTAGCTGTTCATATAAAATGGTGTTTTTTCTTTG  600

seq1  AATGGATATTTGATGATATCTTCTGTTTAACTTATTAAGTTTTTAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATATTTGATGATATCTTCTGTTTAACTTATTAAGTTTTTAATTTT  650

seq1  GGCCAGTATTTTTCTATTTAAAAAACACAAAACAAAACAAAAATCCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTATTTTTCTATTTAAAAAACACAAAACAAAACAAAAATCCTGAA  700

seq1  AGCTCAGGTAGTTTTGGCACCCAGTGGAAATCCAAGGTTCCTTTGAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGTAGTTTTGGCACCCAGTGGAAATCCAAGGTTCCTTTGAGTGA  750

seq1  TACATGGGTTTCTTGATGCTTTTATCAATTTTGGTGGAAGCTCTCCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGTTTCTTGATGCTTTTATCAATTTTGGTGGAAGCTCTCCAGCT  800

seq1  CTCTTGAGATGACTTTACAAGGTCATTGCATACAGATGACTCATCGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGATGACTTTACAAGGTCATTGCATACAGATGACTCATCGTGCT  850

seq1  GCTGCTAGAAAAGAACTTTGGGAATAAGCCATACGGAGATTTGAAAGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTAGAAAAGAACTTTGGGAATAAGCCATACGGAGATTTGAAAGAGC  900

seq1  CTGGTTTCTCTTTATGACAGTTATGCAATCATAAAAAATAGCCTTGAACA  950
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  CTGGTTTCTCTTTATGACAG-TATGCAATCATAAAAAATAGCCTTG-ACA  948

seq1  CTAAGAAATGAGCCAGGCTATTAGAAAATGAACCTGTTTATCTTGATCAA  1000
      |||||||||||||||||||| ||||||||||||||||||||| ||||| |
seq2  CTAAGAAATGAGCCAGGCTA-TAGAAAATGAACCTGTTTATC-TGATC-A  995

seq1  CTATATACAGTTTTGCCTCCATATTATTTGGTCCCTAAAAATAATAGTTT  1050
      |||||||||| |||||   ||||||||||||||||| ||||||||||  |
seq2  CTATATACAG-TTTGC--TCATATTATTTGGTCCCT-AAAATAATAG--T  1039

seq1  TTTCCCCAAAATAATGTCACCATGT  1075
      ||||||||||   ||||||||||||
seq2  TTTCCCCAAA--TATGTCACCATGT  1062


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