BAC Information

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BAC

Clone NameB6Ng01-008N05
Chromosome13 (Build37)
Map Location 21,457,549 - 21,561,895
singlet/doubletdoublet
Overlap geneZfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367
Downstream geneOTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008N05.bB6Ng01-008N05.g
ACCDH844951DH844952
length917968
definitionDH844951|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N05, 5' end.DH844952|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,457,549 - 21,458,462)(21,560,928 - 21,561,895)
sequence
gaattcacagttacatgtaagagaactgataatatcattcttgacagagt
taagggctgtaggtggccattctgcaggggctttttttgaatgcaccagt
gaacatcatatacaagctactccgtagattctagtctactgagaagagat
agaggaaaaaagatgtcagatgttgatatcaaaagcacagagaaaggggt
agtaaagtactgagggtcacaccattcaacagacaggtcatatcacaggc
cttaagtgttaccaggatgtacagggtagagggaaatttgtagagaagat
gaaagaattaaagaacttatatatagacttagagaccattatagagatat
tagattttggcaaatggaaagtcagtgtctagctttgagcagaaaagaaa
tataaagtaaattttaaaataatcactctagttgttatattgggtaaatt
ctacatggtggtgaggagacctgtaggtcaaaagttgagttaatggaaat
cattttaggaagttgtacctattaactagagatgcagtcagttgtaaatc
gcccagtgtggatgctggagaccctgtattctagaagagcagcaaatgtt
cttacctactgttcttcagctccttcctctagaattcctttttcctcctc
tctgctttctttccatctttcccttcacctcttttccatctccaattttt
gagcactaggcaaagatgtgaaaataacaggagagcaacaaaatatagca
gtatcagggaaaagaaggttccctggattgagtgacattttcaaatgacc
ttgaaaaaatgagtgcgatcgagacatgctgattggttgtgaaaaaagcc
atccgggcttgagcaggcaggagcctgtgtgaacaactgtactctttctt
gtttgctgctcttagag
gaattcacttagctcagaaacttaaactcaaactttagttccagaagtaa
tttaggttttgcttccaatagagaggaacaggattgtttgctaagtcgcc
agcaactgaacctttggcaaggcatactctaagcagttacccaacactct
ttgatgcagaatctcatgattacttgggttttcttagttgctgggactgc
agatctgcagcagcaccaggcagctgtcaagtcccatcgaggcaggtagt
tggagtaaaggcaataggaatccttcactaactcagcagaaaagatggag
acaggaatggaaaaggaatggtgagccatgcggtggtaaacatatgactc
taagaaaagatctaacaaaaatctaaaggaagagatgtctgtgttccata
gttctactccactgggcaaaactgaaagacgcaacccaaatttagattaa
aatcaataaatttattcttactgatagtaagatggactcaatcttatgac
caaattgggaaacatagagggcaatgggaagcataaaggtggacattaca
attatctcccttatatgaaatccgcagctgtgtgggaaatttgctttgct
cccttacacagagatagagaaaacggctcgtcccttttcccacagggaaa
gagggttacaaaagccaattatctcgtatcaggcgccccattctttcgtt
cttatctcgcagcagtagcttcattctgtggaggatgcaggctgctagga
actcatgcgaatcaacagctattttaagcgatgcctggtccagagttaag
ttttcttatccatcacagttctgcttatgaaaacctttaatcttggtgct
tgagtggtgcctagcaagttccaagccagcatatgcaccacttaaaaata
agcaaatagaaactttatatgccccagtacaggggaatgccaagaagcgg
gagtgggtgggtagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21457549_21458462
seq2: B6Ng01-008N05.b_49_965

seq1  GAATTCACAGTTACATGTAAGAGAACTGATAATATCATTCTTGACAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTTACATGTAAGAGAACTGATAATATCATTCTTGACAGAGT  50

seq1  TAAGGGCTGTAGGTGGCCATTCTGCAGGGGCTTTTTTTGAATGCACCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCTGTAGGTGGCCATTCTGCAGGGGCTTTTTTTGAATGCACCAGT  100

seq1  GAACATCATATACAAGCTACTCCGTAGATTCTAGTCTACTGAGAAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCATATACAAGCTACTCCGTAGATTCTAGTCTACTGAGAAGAGAT  150

seq1  AGAGGAAAAAAGATGTCAGATGTTGATATCAAAAGCACAGAGAAAGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAAAAGATGTCAGATGTTGATATCAAAAGCACAGAGAAAGGGGT  200

seq1  AGTAAAGTACTGAGGGTCACACCATTCAACAGACAGGTCATATCACAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTACTGAGGGTCACACCATTCAACAGACAGGTCATATCACAGGC  250

seq1  CTTAAGTGTTACCAGGATGTACAGGGTAGAGGGAAATTTGTAGAGAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTGTTACCAGGATGTACAGGGTAGAGGGAAATTTGTAGAGAAGAT  300

seq1  GAAAGAATTAAAGAACTTATATATAGACTTAGAGACCATTATAGAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTAAAGAACTTATATATAGACTTAGAGACCATTATAGAGATAT  350

seq1  TAGATTTTGGCAAATGGAAAGTCAGTGTCTAGCTTTGAGCAGAAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTGGCAAATGGAAAGTCAGTGTCTAGCTTTGAGCAGAAAAGAAA  400

seq1  TATAAAGTAAATTTTAAAATAATCACTCTAGTTGTTATATTGGGTAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTAAATTTTAAAATAATCACTCTAGTTGTTATATTGGGTAAATT  450

seq1  CTACATGGTGGTGAGGAGACCTGTAGGTCAAAAGTTGAGTTAATGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGTGGTGAGGAGACCTGTAGGTCAAAAGTTGAGTTAATGGAAAT  500

seq1  CATTTTAGGAAGTTGTACCTATTAACTAGAGATGCAGTCAGTTGTAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGGAAGTTGTACCTATTAACTAGAGATGCAGTCAGTTGTAAATC  550

seq1  GCCCAGTGTGGATGCTGGAGACCCTGTATTCTAGAAGAGCAGCAAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGTGGATGCTGGAGACCCTGTATTCTAGAAGAGCAGCAAATGTT  600

seq1  CTTACCTACTGTTCTTCAGCTCCTTCCTCTAGAATTCCTTTTTCCTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTACTGTTCTTCAGCTCCTTCCTCTAGAATTCCTTTTTCCTCCTC  650

seq1  TCTGCTTTCTTTCCATCTTTCCCTTCACCTCTTTTCCATCTCCAATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCTTTCCATCTTTCCCTTCACCTCTTTTCCATCTCCAATTTTT  700

seq1  GAGCACTAGGCAAAGATGTGAAAATAACAGGAGAGCAACAAAATATAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTAGGCAAAGATGTGAAAATAACAGGAGAGCAACAAAATATAGCA  750

seq1  GTATCAGGGAAAAGAAGGTTCCCTGGATTGAGTGACATTTTCAAATGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGGAAAAGAAGGTTCCCTGGATTGAGTGACATTTTCAAATGACC  800

seq1  TTG-AAAAATGAGTGCGATCGAGACATGCTGATT-GCTGTGAAAAAAGCC  848
      ||| |||||||||||||||||||||||||||||| | |||||||||||||
seq2  TTGAAAAAATGAGTGCGATCGAGACATGCTGATTGGTTGTGAAAAAAGCC  850

seq1  ATCCGGGCTTGAGCAGGCAGGAGCCTGTGTGAAC-ACTGTACTCTTTCTT  897
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCCGGGCTTGAGCAGGCAGGAGCCTGTGTGAACAACTGTACTCTTTCTT  900

seq1  GTTTGCTGCTCTTAGAG  914
      |||||||||||||||||
seq2  GTTTGCTGCTCTTAGAG  917

seq1: chr13_21560928_21561895
seq2: B6Ng01-008N05.g_70_1037 (reverse)

seq1  TCCCCTACCCACCCACTCCCGCTTCTTGGCATTCCCCTGTACTGGGGCAT  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACCCACCCACTCCCGCTTCTTGGCATTCCCCTGTACTGGGGCAT  50

seq1  ATAAAGTTTCTATTTGCTTATTTTTAAGTGGTGCATATGCTGGCTTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTCTATTTGCTTATTTTTAAGTGGTGCATATGCTGGCTTGGAA  100

seq1  CTTGCTAGGCACCACTCAAGCACCAAGATTAAAGGTTTTCATAAGCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAGGCACCACTCAAGCACCAAGATTAAAGGTTTTCATAAGCAGAA  150

seq1  CTGTGATGGATAAGAAAACTTAACTCTGGACCAGGCATCGCTTAAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGGATAAGAAAACTTAACTCTGGACCAGGCATCGCTTAAAATAG  200

seq1  CTGTTGATTCGCATGAGTTCCTAGCAGCCTGCATCCTCCACAGAATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGATTCGCATGAGTTCCTAGCAGCCTGCATCCTCCACAGAATGAAG  250

seq1  CTACTGCTGCGAGATAAGAACGAAAGAATGGGGCGCCTGATACGAGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTGCGAGATAAGAACGAAAGAATGGGGCGCCTGATACGAGATAA  300

seq1  TTGGCTTTTGTAACCCTCTTTCCCTGTGGGAAAAGGGACGAGCCGTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTTGTAACCCTCTTTCCCTGTGGGAAAAGGGACGAGCCGTTTTC  350

seq1  TCTATCTCTGTGTAAGGGAGCAAAGCAAATTTCCCACACAGCTGCGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCTGTGTAAGGGAGCAAAGCAAATTTCCCACACAGCTGCGGATT  400

seq1  TCATATAAGGGAGATAATTGTAATGTCCACCTTTATGCTTCCCATTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAGGGAGATAATTGTAATGTCCACCTTTATGCTTCCCATTGCCC  450

seq1  TCTATGTTTCCCAATTTGGTCATAAGATTGAGTCCATCTTACTATCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTTCCCAATTTGGTCATAAGATTGAGTCCATCTTACTATCAGTA  500

seq1  AGAATAAATTTATTGATTTTAATCTAAATTTGGGTTGCGTCTTTCAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAATTTATTGATTTTAATCTAAATTTGGGTTGCGTCTTTCAGTTT  550

seq1  TGCCCAGTGGAGTAGAACTATGGAACACAGACATCTCTTCCTTTAGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTGGAGTAGAACTATGGAACACAGACATCTCTTCCTTTAGATTT  600

seq1  TTGTTAGATCTTTTCTTAGAGTCATATGTTTACCACCGCATGGCTCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGATCTTTTCTTAGAGTCATATGTTTACCACCGCATGGCTCACCA  650

seq1  TTCCTTTTCCATTCCTGTCTCCATCTTTTCTGCTGAGTTAGTGAAGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCCATTCCTGTCTCCATCTTTTCTGCTGAGTTAGTGAAGGATT  700

seq1  CCTATTGCCTTTACTCCAACTACCTGCCTCGATGGGACTTGACAGCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGCCTTTACTCCAACTACCTGCCTCGATGGGACTTGACAGCTGCC  750

seq1  TGGTGCTGCTGCAGATCTGCAGTCCCAGCAACTAAGAAAACCCAAGTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGCTGCAGATCTGCAGTCCCAGCAACTAAGAAAACCCAAGTAAT  800

seq1  CATGAGATTCTGCATCAAAGAGTGTTGGGTAACTGCTTAGAGTATGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATTCTGCATCAAAGAGTGTTGGGTAACTGCTTAGAGTATGCCTT  850

seq1  GCCAAAGGTTCAGTTGCTGGCGACTTAGCAAACAATCCTGTTCCTCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGTTCAGTTGCTGGCGACTTAGCAAACAATCCTGTTCCTCTCTA  900

seq1  TTGGAAGCAAAACCTAAATTACTTCTGGAACTAAAGTTTGAGTTTAAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCAAAACCTAAATTACTTCTGGAACTAAAGTTTGAGTTTAAGTT  950

seq1  TCTGAGCTAAGTGAATTC  968
      ||||||||||||||||||
seq2  TCTGAGCTAAGTGAATTC  968