BAC Information

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BAC

Clone NameB6Ng01-009H23
Chromosome13 (Build37)
Map Location 111,532,573 - 111,662,597
singlet/doubletdoublet
Overlap geneLOC100040614
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H23.bB6Ng01-009H23.g
ACCDH845421DH845422
length1,0221,137
definitionDH845421|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H23, 5' end.DH845422|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,532,573 - 111,533,598)(111,661,443 - 111,662,597)
sequence
gaattctcagctgaaaacccacaattctttgttgtttggaccaatgcaac
tgttgctaactgtagtatttatgctagcagttattaactcctttgcatcc
tagctcaacataatccatttcttccttgattgggactgttatcatatttg
tctctgaatatctcacacctctgttttcctttactcctgtattccctttt
tattttccttccattctccttttccaagaataaatgtgagcaaagttgct
cgaggttaatgctaacaagcaggagatcatgacactgggtcttgggaaca
gaatgattttttcctacttgaaaggtgaaggtttgaaaagtaattgttcc
aagtagcatcttacataaatgacacatctaattttaccttgtcaaatcgt
tatgcagatgattaaacctgaggcttctttttctacataataaatatgtt
ataaccagtgcttaccaaacaagatttcaagatttatatttattctgtat
atgtatgtatataagtcatatatatatatgtttatatatatatttatagt
gaatatatttttagtatgtagatgctttttgtcatctgttgcaaatattt
tatcccatgatccacattgtttcttatttaaatagactgttgggggttaa
ggcttgatctaaaaccaaccatggaatgcttcttaccatttttcactaat
ctaaaataaccaaattggtttgggaaggagagaaaatttttttcttagaa
aaagtatctttgtggttgcatttggtttttgtggttaacacagtcctctc
caaaaaaacctcagtagaggaggtaggtgactcacaggtataattatggt
cccgtttcaaatttagataatgtaccacaggttgggcaactctttgggag
gctaaacaaatgttacagcatagtagctatagatcgatgtgagaaagtct
gtgttggtttatgaaccagtcctacagctaaggcaacgtcctccactgct
agtagcttgagtctcgtttaaa
gaattcagacatacccatgcaaagcatcacagataccttgcttcaacatc
aagacgttttcctgtttcttctgctacatccctcgtgtggtactgtcttc
tttaggaaccaacgagagaggtggacggtcatttccattcccatttttta
gtgagtgtaatttccaaggcaggagcttgcaggaaagcccttcctccctc
taccccattcatgacagatgtgtctcctgctagctaggagctgaagatcc
gagatacccaagctcattcatcagcagccttctgaatgaagcctctggga
ttggatttaaagtcctcattgctgatagaatatgcactttttatttgttg
ctgatctctttgtccagctaagtggaaagggccttgggctgcaatttaaa
tggcttgaacttggtacaaatgtcctctttattcacagagaaagctgcta
gcagtgagagctgaaagacattgttgagtctccgtatgaaagtacttgaa
actagggcattgttctatttatcttgggtagagtctgaatggatgaatgg
cccagatagccactgacctccctctaagccctgatagtgtaaaacttcct
tggaaatatttctttaatactaggcatgatgctttatgatttcaaacacc
aaacctacaaaaacaagagcctagatttaaagggtttcttttcttcttcc
tttttttaatctcatgctatgtgttggctgctttgattgttctctatagc
tggcacagtgcacagatcatgtagggatttcaaagttattctaagggaga
gacatacaataggtttgcaaggagaagccatttgaagcctaacttctaat
gacacttgtgttattgatttcttttgagaattctctctctctctctccgt
tttgctctctttgcttttgttctcaaagagaacctaatgtctaaaggcat
ctttgacaattcattaagcctttttgtaagagcctcaagcttgtcaccgc
tttctgaggataaagttaggatgcttttgagactttgggtgggcagcctg
tcagtgcacgtgtccacctgcctatattcaatgttagtattgggccattc
actcgaattggatcttctcttaacaggaggtctgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111532573_111533598
seq2: B6Ng01-009H23.b_44_1065

seq1  GAATTCTCAGCTGAAAACCCACAATTCTTTGTTGTTTGGACCAATGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTGAAAACCCACAATTCTTTGTTGTTTGGACCAATGCAAC  50

seq1  TGTTGCTAACTGTAGTATTTATGCTAGCAGTTATTAACTCCTTTGCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTAACTGTAGTATTTATGCTAGCAGTTATTAACTCCTTTGCATCC  100

seq1  TAGCTCAACATAATCCATTTCTTCCTTGATTGGGACTGTTATCATATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAACATAATCCATTTCTTCCTTGATTGGGACTGTTATCATATTTG  150

seq1  TCTCTGAATATCTCACACCTCTGTTTTCCTTTACTCCTGTATTCCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAATATCTCACACCTCTGTTTTCCTTTACTCCTGTATTCCCTTTT  200

seq1  TATTTTCCTTCCATTCTCCTTTTCCAAGAATAAATGTGAGCAAAGTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTTCCATTCTCCTTTTCCAAGAATAAATGTGAGCAAAGTTGCT  250

seq1  CGAGGTTAATGCTAACAAGCAGGAGATCATGACACTGGGTCTTGGGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTTAATGCTAACAAGCAGGAGATCATGACACTGGGTCTTGGGAACA  300

seq1  GAATGATTTTTTCCTACTTGAAAGGTGAAGGTTTGAAAAGTAATTGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATTTTTTCCTACTTGAAAGGTGAAGGTTTGAAAAGTAATTGTTCC  350

seq1  AAGTAGCATCTTACATAAATGACACATCTAATTTTACCTTGTCAAATCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCATCTTACATAAATGACACATCTAATTTTACCTTGTCAAATCGT  400

seq1  TATGCAGATGATTAAACCTGAGGCTTCTTTTTCTACATAATAAATATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGATGATTAAACCTGAGGCTTCTTTTTCTACATAATAAATATGTT  450

seq1  ATAACCAGTGCTTACCAAACAAGATTTCAAGATTTATATTTATTCTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAGTGCTTACCAAACAAGATTTCAAGATTTATATTTATTCTGTAT  500

seq1  ATGTATGTATATAAGTCATATATATATATGTTTATATATATATTTATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATATAAGTCATATATATATATGTTTATATATATATTTATAGT  550

seq1  GAATATATTTTTAGTATGTAGATGCTTTTTGTCATCTGTTGCAAATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATTTTTAGTATGTAGATGCTTTTTGTCATCTGTTGCAAATATTT  600

seq1  TATCCCATGATCCACATTGTTTCTTATTTAAATAGACTGTTGGGGGTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCATGATCCACATTGTTTCTTATTTAAATAGACTGTTGGGGGTTAA  650

seq1  GGCTTGATCTAAAACCAACCATGGAATGCTTCTTACCATTTTTCACTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGATCTAAAACCAACCATGGAATGCTTCTTACCATTTTTCACTAAT  700

seq1  CTAAAATAACCAAATTGGTTTGGGAAGGAGAGAAAATTTTTTTCTTAG-A  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTAAAATAACCAAATTGGTTTGGGAAGGAGAGAAAATTTTTTTCTTAGAA  750

seq1  AAAGTATCTTTGTGGTTGCATTTGG-TTTTGTGGTTAACACAGTCCTCTC  798
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAGTATCTTTGTGGTTGCATTTGGTTTTTGTGGTTAACACAGTCCTCTC  800

seq1  CAAAAAAACCTCAGTAGAGGAGGTAGGTGACCCACAGGTATAATTATGGT  848
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAAAAAACCTCAGTAGAGGAGGTAGGTGACTCACAGGTATAATTATGGT  850

seq1  CCCGTTTCCAAATTTAGATAATGTACCACAGGTTGGGCAACTCTTTGGGA  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTT-CAAATTTAGATAATGTACCACAGGTTGGGCAACTCTTTGGGA  899

seq1  GGCTAAACAAATGTTACAGCAATAGTTAGCTATAGATTCGATGTGAGAAA  948
      |||||||||||||||||||| |||| |||||||||| |||||||||| ||
seq2  GGCTAAACAAATGTTACAGC-ATAG-TAGCTATAGA-TCGATGTGAG-AA  945

seq1  AGCCTGTGTATGTTTATGAACAAGTCCTACAGCTAAGGCAGCGTTCTTCC  998
      || ||||||  |||||||||| |||||||||||||||||| || || |||
seq2  AGTCTGTGTTGGTTTATGAACCAGTCCTACAGCTAAGGCAACG-TCCTCC  994

seq1  ACTGCTAGTTAGC-TGAGTCTCCTTTAAA  1026
      |||||||| |||| |||||||| ||||||
seq2  ACTGCTAG-TAGCTTGAGTCTCGTTTAAA  1022

seq1: chr13_111661443_111662597
seq2: B6Ng01-009H23.g_69_1205 (reverse)

seq1  GTGCAGACCTCCTGGGTAAGGAGGAGTTACAAATCGTAGTGAATGGCCAC  50
      |||||||||||||  || | ||| || | ||| ||| ||||||||||| |
seq2  GTGCAGACCTCCT--GTTAAGAGAAGATCCAATTCG-AGTGAATGGCC-C  46

seq1  AATACTAAACACTGAATAATAAGCAGCTGGACCACGTGCCACTGACAGGC  100
      |||||| |||| ||||| ||| |||| |||| |||||| |||||||||||
seq2  AATACT-AACATTGAAT-ATAGGCAGGTGGA-CACGTG-CACTGACAGGC  92

seq1  CTGCCACTCAAAGTCTCAAAAGCATTCTTTAACTTTATCCTCAGAAAGC-  149
         |||| ||||||||||||||||| |  |||||||||||||||||||| 
seq2  TGCCCACCCAAAGTCTCAAAAGCATCC--TAACTTTATCCTCAGAAAGCG  140

seq1  GTGACAAGCTTTGAGGCTCTTTACAAAAAGGGCTTAATGAATTGTTCAAA  199
      ||||||||| ||||||||| ||||||||| |||||||||||||| |||||
seq2  GTGACAAGC-TTGAGGCTC-TTACAAAAA-GGCTTAATGAATTG-TCAAA  186

seq1  GATTGCCTTTAAGACATTAGGTTTCTCTTTTGAGAAACAAAAGCAAAGAG  249
      || ||||||| |||||||||| ||||| |||||| |||||||||||||||
seq2  GA-TGCCTTT-AGACATTAGG-TTCTC-TTTGAG-AACAAAAGCAAAGAG  231

seq1  AGCAAAACGGAGAGAGAGAGAGAGAATTCTCAAAAGAAATCAATAACACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACGGAGAGAGAGAGAGAGAATTCTCAAAAGAAATCAATAACACA  281

seq1  AGTGTCATTAGAAGTTAGGCTTCAAATGGCTTCTCCTTGCAAACCTATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCATTAGAAGTTAGGCTTCAAATGGCTTCTCCTTGCAAACCTATTG  331

seq1  TATGTCTCTCCCTTAGAATAACTTTGAAATCCCTACATGATCTGTGCACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCTCCCTTAGAATAACTTTGAAATCCCTACATGATCTGTGCACT  381

seq1  GTGCCAGCTATAGAGAACAATCAAAGCAGCCAACACATAGCATGAGATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGCTATAGAGAACAATCAAAGCAGCCAACACATAGCATGAGATTA  431

seq1  AAAAAAGGAAGAAGAAAAGAAACCCTTTAAATCTAGGCTCTTGTTTTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGAAGAAGAAAAGAAACCCTTTAAATCTAGGCTCTTGTTTTTGT  481

seq1  AGGTTTGGTGTTTGAAATCATAAAGCATCATGCCTAGTATTAAAGAAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGTGTTTGAAATCATAAAGCATCATGCCTAGTATTAAAGAAATA  531

seq1  TTTCCAAGGAAGTTTTACACTATCAGGGCTTAGAGGGAGGTCAGTGGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGGAAGTTTTACACTATCAGGGCTTAGAGGGAGGTCAGTGGCTA  581

seq1  TCTGGGCCATTCATCCATTCAGACTCTACCCAAGATAAATAGAACAATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCATTCATCCATTCAGACTCTACCCAAGATAAATAGAACAATGC  631

seq1  CCTAGTTTCAAGTACTTTCATACGGAGACTCAACAATGTCTTTCAGCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTTCAAGTACTTTCATACGGAGACTCAACAATGTCTTTCAGCTCT  681

seq1  CACTGCTAGCAGCTTTCTCTGTGAATAAAGAGGACATTTGTACCAAGTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTAGCAGCTTTCTCTGTGAATAAAGAGGACATTTGTACCAAGTTC  731

seq1  AAGCCATTTAAATTGCAGCCCAAGGCCCTTTCCACTTAGCTGGACAAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTTAAATTGCAGCCCAAGGCCCTTTCCACTTAGCTGGACAAAGA  781

seq1  GATCAGCAACAAATAAAAAGTGCATATTCTATCAGCAATGAGGACTTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCAACAAATAAAAAGTGCATATTCTATCAGCAATGAGGACTTTAA  831

seq1  ATCCAATCCCAGAGGCTTCATTCAGAAGGCTGCTGATGAATGAGCTTGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATCCCAGAGGCTTCATTCAGAAGGCTGCTGATGAATGAGCTTGGG  881

seq1  TATCTCGGATCTTCAGCTCCTAGCTAGCAGGAGACACATCTGTCATGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCGGATCTTCAGCTCCTAGCTAGCAGGAGACACATCTGTCATGAAT  931

seq1  GGGGTAGAGGGAGGAAGGGCTTTCCTGCAAGCTCCTGCCTTGGAAATTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGAGGGAGGAAGGGCTTTCCTGCAAGCTCCTGCCTTGGAAATTAC  981

seq1  ACTCACTAAAAAATGGGAATGGAAATGACCGTCCACCTCTCTCGTTGGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTAAAAAATGGGAATGGAAATGACCGTCCACCTCTCTCGTTGGTT  1031

seq1  CCTAAAGAAGACAGTACCACACGAGGGATGTAGCAGAAGAAACAGGAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGAAGACAGTACCACACGAGGGATGTAGCAGAAGAAACAGGAAAA  1081

seq1  CGTCTTGATGTTGAAGCAAGGTATCTGTGATGCTTTGCATGGGTATGTCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTGATGTTGAAGCAAGGTATCTGTGATGCTTTGCATGGGTATGTCT  1131

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1137