BAC Information

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BAC

Clone NameB6Ng01-009K08
Chromosome13 (Build37)
Map Location 48,178,994 - 48,367,246
singlet/doubletdoublet
Overlap geneId4
Upstream geneAof1, Dek, LOC100039761, Ibrdc2, 4931429P17Rik
Downstream geneLOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K08.bB6Ng01-009K08.g
ACCDH845531DH845532
length735844
definitionDH845531|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K08, 5' end.DH845532|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,366,513 - 48,367,246)(48,178,994 - 48,179,841)
sequence
gaattccgatagtgtaaatgttattcattcatttatttacttacttattg
tgaagttaaagattttccttctgaggataggaggcctgggccttaaaaga
aatacttttattttctgtgtctgggtgctttgcccagatgtttgtttgtg
cagaacatgccttgttgttgtgacagttgtaggtcaccatgtgggtgctg
gagaccgagcgagagctgttctcggcaagagcagcacgcgctcctaaccg
ctgaggatgtaggctcacacataaacaaatgcttttagttttattttatt
ttagagtatggacgttctgcctgaatgcatgtctgtgcagaccctgcctg
gttccttggaggtcaggaagaaggcgatgaatcccctgttctagggaggc
ttgagttaagccagcacaaacggcacatcctagggcttcacacctttagt
tgcgttatcagtgcaatattggactttgatattttttcataatgcctcta
ctttatgactcctgggatgctgcaatggacgcagtgggctcctaaatatt
ggcacacccctatctctctgttgagtttaccacacataaggacacataaa
tgccccaagtaattttcaacatcagttataagagacagctttttctcagc
tctgaagaatacagagttttggatgctattttcaactttagcctgtttat
ttctgtttttgattttgagattggggggggggggg
gaattccaaacctcaaggcaaagcctttacatggaaaaatatgagcctcc
ttaaatatgcggtcacagtgaaaaattaccaagcataaacagcgatcaac
ccaacatgtacaaaacgcagtaaggtttgatctacaaaacgttaagacaa
tgaaacagtgatgaaacaagtagatgaggaaaaataaaataattgaaaat
atgaagattccacttaccaatttgttcaggccttggaagaagatataagt
catccaagaaaaaatgtttataaataaaaaaaaaaaaaaaaaaaaggatt
ctggacagcagccagggaagcagaccagtgtctcattgagatctgagaag
gtccaccatcagagatgcttctccctgccaaagatggaacaaaaacagac
ccacagccagacaggcagagagtgagagaccttggaaccctcagccagaa
atggaatgtctcatcagattcctccccttttagggctcagaggacatgtg
gcaagaggaggaagaaacagtgtaagagacaaaagggatagaggacacca
agaaagcaaagccctctaaatcaatgtggtcaaaactcatacaaacttac
agaaactaaggcagcacgcacagggcctgcgcaggtctgcaccaggtccc
ctgtgtatatactccagttgagtaattttatggaattcctgagtgtgcaa
acgattgtgtctctgaatcttgttacttttcttgggctcttttctgtttg
ttttgttcattgtgatgtcttgggtttgtcctatcttttattttatcata
tcttattttactttattcgtatcccttagaagcctgttgtttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48366513_48367246
seq2: B6Ng01-009K08.b_45_779 (reverse)

seq1  CCCCCCCCCCCCCAATCTCAAAATCAAAAACAG-AATTAACAGGCTAAAG  49
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  CCCCCCCCCCCCCAATCTCAAAATCAAAAACAGAAATAAACAGGCTAAAG  50

seq1  TTGAAAATAGCATCCAAAACTCTGTATTCTTCAGAGCTGAGAAAAAGCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATAGCATCCAAAACTCTGTATTCTTCAGAGCTGAGAAAAAGCTG  100

seq1  TCTCTTATAACTGATGTTGAAAATTACTTGGGGCATTTATGTGTCCTTAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATAACTGATGTTGAAAATTACTTGGGGCATTTATGTGTCCTTAT  150

seq1  GTGTGGTAAACTCAACAGAGAGATAGGGGTGTGCCAATATTTAGGAGCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTAAACTCAACAGAGAGATAGGGGTGTGCCAATATTTAGGAGCCC  200

seq1  ACTGCGTCCATTGCAGCATCCCAGGAGTCATAAAGTAGAGGCATTATGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGTCCATTGCAGCATCCCAGGAGTCATAAAGTAGAGGCATTATGAA  250

seq1  AAAATATCAAAGTCCAATATTGCACTGATAACGCAACTAAAGGTGTGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCAAAGTCCAATATTGCACTGATAACGCAACTAAAGGTGTGAAG  300

seq1  CCCTAGGATGTGCCGTTTGTGCTGGCTTAACTCAAGCCTCCCTAGAACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGATGTGCCGTTTGTGCTGGCTTAACTCAAGCCTCCCTAGAACAG  350

seq1  GGGATTCATCGCCTTCTTCCTGACCTCCAAGGAACCAGGCAGGGTCTGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCATCGCCTTCTTCCTGACCTCCAAGGAACCAGGCAGGGTCTGCA  400

seq1  CAGACATGCATTCAGGCAGAACGTCCATACTCTAAAATAAAATAAAACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGCATTCAGGCAGAACGTCCATACTCTAAAATAAAATAAAACTA  450

seq1  AAAGCATTTGTTTATGTGTGAGCCTACATCCTCAGCGGTTAGGAGCGCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTGTTTATGTGTGAGCCTACATCCTCAGCGGTTAGGAGCGCGT  500

seq1  GCTGCTCTTGCCGAGAACAGCTCTCGCTCGGTCTCCAGCACCCACATGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTTGCCGAGAACAGCTCTCGCTCGGTCTCCAGCACCCACATGGT  550

seq1  GACCTACAACTGTCACAACAACAAGGCATGTTCTGCACAAACAAACATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACAACTGTCACAACAACAAGGCATGTTCTGCACAAACAAACATCT  600

seq1  GGGCAAAGCACCCAGACACAGAAAATAAAAGTATTTCTTTTAAGGCCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGCACCCAGACACAGAAAATAAAAGTATTTCTTTTAAGGCCCAG  650

seq1  GCCTCCTATCCTCAGAAGGAAAATCTTTAACTTCACAATAAGTAAGTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTATCCTCAGAAGGAAAATCTTTAACTTCACAATAAGTAAGTAAA  700

seq1  TAAATGAATGAATAACATTTACACTATCGGAATTC  734
      |||||||||||||||||||||||||||||||||||
seq2  TAAATGAATGAATAACATTTACACTATCGGAATTC  735

seq1: chr13_48178994_48179841
seq2: B6Ng01-009K08.g_71_914

seq1  GAATTCCAAACCTCAAGGCAAAGCCTTTACATGGAAAAATATGAGCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCTCAAGGCAAAGCCTTTACATGGAAAAATATGAGCCTCC  50

seq1  TTAAATATGCGGTCACAGTGAAAAATTACCAAGCATAAACAGCGATCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGCGGTCACAGTGAAAAATTACCAAGCATAAACAGCGATCAAC  100

seq1  CCAACATGTACAAAACGCAGTAAGGTTTGATCTACAAAACGTTAAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGTACAAAACGCAGTAAGGTTTGATCTACAAAACGTTAAGACAA  150

seq1  TGAAACAGTGATGAAACAAGTAGATGAGGAAAAATAAAATAATTGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGTGATGAAACAAGTAGATGAGGAAAAATAAAATAATTGAAAAT  200

seq1  ATGAAGATTCCACTTACCAATTTGTTCAGGCCTTGGAAGAAGATATAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATTCCACTTACCAATTTGTTCAGGCCTTGGAAGAAGATATAAGT  250

seq1  CATCCAAGAAAAAATGTTTATAAATAAAAAAAAAAAAAAAAAAAAGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGAAAAAATGTTTATAAATAAAAAAAAAAAAAAAAAAAAGGATT  300

seq1  CTGGACAGCAGCCAGGGAAGCAGACCAGTGTCTCATTGAGATCTGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGCAGCCAGGGAAGCAGACCAGTGTCTCATTGAGATCTGAGAAG  350

seq1  GTCCACCATCAGAGATGCTTCTCCCTGCCAAAGATGGAACAAAAACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCATCAGAGATGCTTCTCCCTGCCAAAGATGGAACAAAAACAGAC  400

seq1  CCACAGCCAGACAGGCAGAGAGTGAGAGACCTTGGAACCCTCAGCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCAGACAGGCAGAGAGTGAGAGACCTTGGAACCCTCAGCCAGAA  450

seq1  ATGGAATGTCTCATCAGATTCCTCCCCTTTTAGGGCTCAGAGGACACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||  | 
seq2  ATGGAATGTCTCATCAGATTCCTCCCCTTTTAGGGCTCAGAGGACATGTG  500

seq1  GCAAGAGGAGGAAGAAACAGTGTAAGAGACAAAAGGGATAGAGGACACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGAGGAAGAAACAGTGTAAGAGACAAAAGGGATAGAGGACACCA  550

seq1  AGAAAGCAAAGCCCTCTAAATCAATGTGGTCAAAACTCATACAAACTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAAAGCCCTCTAAATCAATGTGGTCAAAACTCATACAAACTTAC  600

seq1  AGAAACTAAGGCAGCACGCACAGGGCCTGCGCAGGTCTGCACCAGGTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAAGGCAGCACGCACAGGGCCTGCGCAGGTCTGCACCAGGTCCC  650

seq1  CTGTGTATATACTCCAGTTGAGTAATTTTATGGAATTCCTGAGTGTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATATACTCCAGTTGAGTAATTTTATGGAATTCCTGAGTGTGCAA  700

seq1  ACGATTGTGTCTCTGAATCTTGTTACTTTTCTTGGGCTCTTTTCTGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTGTGTCTCTGAATCTTGTTACTTTTCTTGGGCTCTTTTCTGTTTG  750

seq1  TTTTGTTCAATTGTGATGTCTTGGGTTTTGTCCTATCTTTTTATTTTATC  800
      |||||||| |||||||||||||||| ||||||||||| ||||||||||||
seq2  TTTTGTTC-ATTGTGATGTCTTGGG-TTTGTCCTATC-TTTTATTTTATC  797

seq1  ATATCTTATTTTACTTTATTCGTATCCCTTAGAAGCCTGTTTGTTTTC  848
      ||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  ATATCTTATTTTACTTTATTCGTATCCCTTAGAAGCCTG-TTGTTTCC  844