BAC Information

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BAC

Clone NameB6Ng01-009L07
Chromosome13 (Build37)
Map Location 115,302,853 - 115,336,862
singlet/doubletdoublet
Overlap genenone
Upstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst
Downstream gene4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009L07.bB6Ng01-009L07.g
ACCDH845577DH845578
length7181,118
definitionDH845577|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L07, 5' end.DH845578|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,336,146 - 115,336,862)(115,302,853 - 115,303,983)
sequence
gaattcttgacatagatatttctagatgcttgattttaatcacagctctc
gaactgtagcttgagagaatttttttttcttctaaaaatttaactttgtg
aggccttcagctcctgaggaccaaagatgagaaaaactgaaatcttatat
agatttctatgctttttttctcagtaaagtcctaaaacaagaagccacat
tcaacaaggaatgagatgtgagaaagactagggcacaaaagtaggaggaa
gactagagggcaaaacttggaagtagattgaaatatattgtaaacatgta
taaaataatcaaagattaaatgaagtatgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtctttttaaaagctgtatcggggctggagagatgattcaactg
tcacaagcacatgctgctctttcacaggacctggttttggtccccagcaa
tcatacagtggttcaaagtcatcgtcagaggatccagtgccttcttctaa
ccaatttgggcaacaggcatccacacagtccaagtatatatgtgaaggaa
agatattcataattgacaaaataagtatgctgaggaacgagggccacatc
accctaaatctcatgtggcagcgtcttaattgtcagtatggtggaactta
ggtatagggtctttgggaggtgggttacaagctttggggtgaatttgttc
atgggaaccttcttttca
gaattctattttcctttgaaggataatattgtccacttttggttattctt
gttttcacataaatttcatttttgcgcgtgtcctacgaatttgtttaggt
acaggaagagagagggagaccttcccaatggaagatagttttgactgaga
agaaaagtcactgatggtctgagaaaagttagggatgaaatccaattggg
ggcaaagttttggagggaagaagggaccagtcatgagttaggaatgataa
gtaggtgctctacttgagtggaagagtctgaatttaagactgtggacctc
cattccaggtacatattagcatcatctaagaagttggtttttgactattt
tgttgttagagctggcagcttcagggctgccttgaacctattaaatgaaa
agtctctagaggtgatgccttgagtctctgtttgttttgcaaatcttcac
aagacatcttactgcacaggcatgtctgagaatcaatttaataagatagg
aacttgattgaataaagcaaagggagtctgcaatcccacgttttccatga
ctcacaagcagtagtggagccaggtcaggcttctgagctggggagtcata
tataacattactcagttttgtagataccaagatgatgatgctggtttaac
atcacagaaccaaaaagagaagggataggggccaaataactcacacaagc
ctatttagctagttagtagaaacctaaggtgtaatcccatggcttttgat
tctagttaagtgactgcaccaagaaaggcatgctagaaaaagaattagaa
tttgacatagagtagagatgggactatttcaaatgacttaaagggtctta
atgttacattgacagagtcccaaagtaggaagagggcaactagaaattga
aaacctgctgtgtgccctgatgtaacccatttaacgcctcaatatcccag
gaggttagtggtgacgcagacaggtcgctgaggtttcagtgacagtagct
tgccatctcacatgcgtgggagtgtggagagatctatacccagttgctgg
cttagagctcatgtcttttcactgtttcattgctgttctgaagagtgatc
cttccacctggtgcaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115336146_115336862
seq2: B6Ng01-009L07.b_47_764 (reverse)

seq1  TGATAAGAAGGTTCCCATGTACGACTTCACCCC-AAGCTTGTAACCCACC  49
      ||| ||||||||||||||| || | |||||||| ||||||||||||||||
seq2  TGAAAAGAAGGTTCCCATGAACAAATTCACCCCAAAGCTTGTAACCCACC  50

seq1  TCCCAAAGACCCTATACCTAAGTTCCACCATACTGACAATTAAGACGCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGACCCTATACCTAAGTTCCACCATACTGACAATTAAGACGCTG  100

seq1  CCACATGAGATTTAGGGTGATGTGGCCCTCGTTCCTCAGCATACTTATTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGAGATTTAGGGTGATGTGGCCCTCGTTCCTCAGCATACTTATTT  150

seq1  TGTCAATTATGAATATCTTTCCTTCACATATATACTTGGACTGTGTGGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTATGAATATCTTTCCTTCACATATATACTTGGACTGTGTGGAT  200

seq1  GCCTGTTGCCCAAATTGGTTAGAAGAAGGCACTGGATCCTCTGACGATGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTGCCCAAATTGGTTAGAAGAAGGCACTGGATCCTCTGACGATGA  250

seq1  CTTTGAACCACTGTATGATTGCTGGGGACCAAAACCAGGTCCTGTGAAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACCACTGTATGATTGCTGGGGACCAAAACCAGGTCCTGTGAAAG  300

seq1  AGCAGCATGTGCTTGTGACAGTTGAATCATCTCTCCAGCCCCGATACAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATGTGCTTGTGACAGTTGAATCATCTCTCCAGCCCCGATACAGC  350

seq1  TTTTAAAAAGACACACACACACACACACACACACACACACATACTTCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGACACACACACACACACACACACACACACACATACTTCATT  400

seq1  TAATCTTTGATTATTTTATACATGTTTACAATATATTTCAATCTACTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTGATTATTTTATACATGTTTACAATATATTTCAATCTACTTCC  450

seq1  AAGTTTTGCCCTCTAGTCTTCCTCCTACTTTTGTGCCCTAGTCTTTCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGCCCTCTAGTCTTCCTCCTACTTTTGTGCCCTAGTCTTTCTCA  500

seq1  CATCTCATTCCTTGTTGAATGTGGCTTCTTGTTTTAGGACTTTACTGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATTCCTTGTTGAATGTGGCTTCTTGTTTTAGGACTTTACTGAGA  550

seq1  AAAAAAGCATAGAAATCTATATAAGATTTCAGTTTTTCTCATCTTTGGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCATAGAAATCTATATAAGATTTCAGTTTTTCTCATCTTTGGTC  600

seq1  CTCAGGAGCTGAAGGCCTCACAAAGTTAAATTTTTAGAAGAAAAAAAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGCTGAAGGCCTCACAAAGTTAAATTTTTAGAAGAAAAAAAAAT  650

seq1  TCTCTCAAGCTACAGTTCGAGAGCTGTGATTAAAATCAAGCATCTAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAGCTACAGTTCGAGAGCTGTGATTAAAATCAAGCATCTAGAAA  700

seq1  TATCTATGTCAAGAATTC  717
      ||||||||||||||||||
seq2  TATCTATGTCAAGAATTC  718

seq1: chr13_115302853_115303983
seq2: B6Ng01-009L07.g_70_1187

seq1  GAATTCTATTTTCCTTTGAAGGATAATATTGTCCACTTTTGGTTATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTTCCTTTGAAGGATAATATTGTCCACTTTTGGTTATTCTT  50

seq1  GTTTTCACATAAATTTCATTTTTGCGCGTGTCCTACGAATTTGTTTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACATAAATTTCATTTTTGCGCGTGTCCTACGAATTTGTTTAGGT  100

seq1  ACAGGAAGAGAGAGGGAGACCTTCCCAATGGAAGATAGTTTTGACTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGAGAGAGGGAGACCTTCCCAATGGAAGATAGTTTTGACTGAGA  150

seq1  AGAAAAGTCACTGATGGTCTGAGAAAAGTTAGGGATGAAATCCAATTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTCACTGATGGTCTGAGAAAAGTTAGGGATGAAATCCAATTGGG  200

seq1  GGCAAAGTTTTGGAGGGAAGAAGGGACCAGTCATGAGTTAGGAATGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTTTTGGAGGGAAGAAGGGACCAGTCATGAGTTAGGAATGATAA  250

seq1  GTAGGTGCTCTACTTGAGTGGAAGAGTCTGAATTTAAGACTGTGGACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGCTCTACTTGAGTGGAAGAGTCTGAATTTAAGACTGTGGACCTC  300

seq1  CATTCCAGGTACATATTAGCATCATCTAAGAAGTTGGTTTTTGACTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGGTACATATTAGCATCATCTAAGAAGTTGGTTTTTGACTATTT  350

seq1  TGTTGTTAGAGCTGGCAGCTTCAGGGCTGCCTTGAACCTATTAAATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAGAGCTGGCAGCTTCAGGGCTGCCTTGAACCTATTAAATGAAA  400

seq1  AGTCTCTAGAGGTGATGCCTTGAGTCTCTGTTTGTTTTGCAAATCTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTAGAGGTGATGCCTTGAGTCTCTGTTTGTTTTGCAAATCTTCAC  450

seq1  AAGACATCTTACTGCACAGGCATGTCTGAGAATCAATTTAATAAGATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCTTACTGCACAGGCATGTCTGAGAATCAATTTAATAAGATAGG  500

seq1  AACTTGATTGAATAAAGCAAAGGGAGTCTGCAATCCCACGTTTTCCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATTGAATAAAGCAAAGGGAGTCTGCAATCCCACGTTTTCCATGA  550

seq1  CTCACAAGCAGTAGTGGAGCCAGGTCAGGCTTCTGAGCTGGGGAGTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGCAGTAGTGGAGCCAGGTCAGGCTTCTGAGCTGGGGAGTCATA  600

seq1  TATAACATTACTCAGTTTTGTAGATACCAAGATGATGATGCTGGTTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATTACTCAGTTTTGTAGATACCAAGATGATGATGCTGGTTTAAC  650

seq1  ATCACAGAACCAAAAAGAGAAGGGATAGGGGCCAAATAACTCACACAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAACCAAAAAGAGAAGGGATAGGGGCCAAATAACTCACACAAGC  700

seq1  CTATTTAGCTAGTTAGTAGAAACCTAAGGTGTAATCCCATGGCTTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGCTAGTTAGTAGAAACCTAAGGTGTAATCCCATGGCTTTTGAT  750

seq1  TCTAGTTAAGTGACTGCACCAAG-AAGGCATGCTAGAAAAAGAATTAGAA  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTAGTTAAGTGACTGCACCAAGAAAGGCATGCTAGAAAAAGAATTAGAA  800

seq1  TTTGACATAGAGTAGAGATGGGACTATTTCAAATGACTTAAAGGGTCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATAGAGTAGAGATGGGACTATTTCAAATGACTTAAAGGGTCTTA  850

seq1  ATGTTACATTGACAGAGTCCCAAAGTAGGAAGAGGGCAAACTAGAAATTG  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTTACATTGACAGAGTCCCAAAGTAGGAAGAGGGC-AACTAGAAATTG  899

seq1  AAAACCTGCTGTGTGCCCTGATGTAACCCATTTAACGCCCTCAATATCCC  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAACCTGCTGTGTGCCCTGATGTAACCCATTTAACG-CCTCAATATCCC  948

seq1  AGGAGGTTAGTGGTGACGCAGACAAGGTCGCTGAGGTTTCAGGTGGACAG  999
      ||||||||||||||||||||||| ||||||||||||||||||   |||||
seq2  AGGAGGTTAGTGGTGACGCAGAC-AGGTCGCTGAGGTTTCAG--TGACAG  995

seq1  TAGCTTGCCCATCTCACATGCGTTGGAAGTGTGGAGAGGATCTATACCCA  1049
      ||||||| |||||||||||||| ||| |||||||||| ||||||||||||
seq2  TAGCTTG-CCATCTCACATGCG-TGGGAGTGTGGAGA-GATCTATACCCA  1042

seq1  AGTTTGCTGGCTCTAGAGCTCATGGTCTTTTCACTGTTTCATTTGGCTG-  1098
         ||||||||| |||||||||| |||||||||||||||||||  |||| 
seq2  --GTTGCTGGCT-TAGAGCTCAT-GTCTTTTCACTGTTTCATT--GCTGT  1086

seq1  TCTG-AGAGTGATCCTTCCAAACCTGGTGCAGGT  1131
      |||| ||||||||||||||  |||||||||||||
seq2  TCTGAAGAGTGATCCTTCC--ACCTGGTGCAGGT  1118