BAC Information

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BAC

Clone NameB6Ng01-009M20
Chromosome13 (Build37)
Map Location 96,241,453 - 96,242,565
singlet/doubletsinglet
Overlap genenone
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp
Downstream geneS100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009M20.bB6Ng01-009M20.g
ACCDH845647DH845648
length1,2841,100
definitionDH845647|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M20, 5' end.DH845648|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacatcctggttcaaaggtaaagagagaaagggcctatacctgg
tgtaggcttttgaagccccaaagcctatctccagtgacacacaccaacaa
tgtcacatctcttaatccttttcaaatagtgccactccctgatgactaag
catccaaatatctgagaccatgggggccattcttattcaaaccaacacag
ttacttttcttttgttgtgataaaataccttgaccaagacaatttaagaa
gaaagagtttatttagtctaaggttccaggtgggttagaatccatgaaag
tagaatggagatgcttgtcttttatcccagtgcagaccaggcctcttctc
aatggcactaatctccttaacagttgcagcctctcttccagcacaaacct
gggctgtaacattaagtctgccagtgtgcctttttctctcaaagttgtac
atctttctgccccgtctgctctttttctttgtagacttgcataagagcgg
ttactagttttcaccagacagagtccatgttaggctgtcttgaaatctcc
cccgcctaagaaatagtccactacttttaagtttagccttgggccaatgt
cttaaaacctggacagaaagcaacaacactctatgccaaatatcacagaa
atagtcactagcccagttgttaatattgttcccttcagaaatctcttgag
ttgagcctccacagtctacgtggttgtcaacactactgttgtccaagatt
caagtatcatggtccattaatctccgcttacagcacccaactgcgtttct
agttcaaagtcccaaagtctttcccattcctcccaaacccaacatggtca
ggtctgtcacaacaacagctcactccctcgtactaacttctgtattggtt
acttcttcattgctgtaataaacactatgaccaagacaacttatagaaca
cagaattggctcacagttctgaggctgagagtctatggtggtagagagaa
aacatggcggcaggagcaggaagccaagggctcacaaactgaagttgcaa
agcacaaagcagagaagcaaactgggaatagcatgaatctttgaccatca
aagccacccccagtggaccactttcctccgcagggaccaggctctcttaa
acttcaaacggcgacccacttggggacatggagaggcattccttagtccg
aagcctggcctctttcagagtcctgagcgagcttaagattaacctaaccc
gaggaacactatagtggcgtggtgcgtcatgtcg
gaattcagcactgaaaaacagtgaactaccaaggcatgagaagtcatcga
agtcatagaaatggatattgctaagtaaaataaacctgtccataaaagct
acatacttcataatctcaaataaatgtcattttggaaaaaaatagagata
acaggacctcacaagtaagtactctgccacccagccccaccccctcttca
cagaaacagtgtcaccaagccgcctaggctggcctcaaacttggcatcct
tttgccttagcctcttgaatacctgggagtacagacctgtgtcactaaga
ttgctggcataaggtttgaagatatgaaaaataattttaaatacatatgt
tatgacataaaggccagttttaaatcttagtcctacagaaagttccttga
agactgacaaatgcttgtttatggttggtcatctgagtgatgctcctaag
aacaaagagcaaggggtaagctgagtgctgaccaccaagaagctaaactg
tggcatgatggaaatatctggaactgatgcctcaagagtcaacttcagca
tcagtcttcagccattggtggtttggggctaaactttgccatggcctttg
ggagcccagatagtcagatggctgctccagtacaaagttgtacactctga
actacctggagttgtagaattgtgtagtcagctctttctttgtttaagat
ttattgattttatgcatatgcgtgttctatatgcatggacatgtctgtct
tagttagggttttactgctgtgaacagataccatgaccaaggcaactctt
ataaaggataacattgaattgggactggcttacaggttctaaggttcagt
ccattatcatcaaggcaggagcatggcagcatccaggcaggcatggggct
ggaggagctgacagactcacctcgttccaaaggcagctagcagagatggc
ttcaggctattaggagagagtcttaaagcccacacccatagtgacactct
actccacaggtcacaccttctatagtgccactctttggatcagcataatg
aaacttacaggatgcatgccgagaggggcattagaatcaattacaatggt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96241453_96242565
seq2: B6Ng01-009M20.g_69_1168

seq1  GAATTCAGCACTGAAAAACAGTGAACTACCAAGGCATGAGAAGTCATCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACTGAAAAACAGTGAACTACCAAGGCATGAGAAGTCATCGA  50

seq1  AGTCATAGAAATGGATATTGCTAAGTAAAATAAACCTGTCCATAAAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAGAAATGGATATTGCTAAGTAAAATAAACCTGTCCATAAAAGCT  100

seq1  ACATACTTCATAATCTCAAATAAATGTCATTTTGGAAAAAAATAGAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTCATAATCTCAAATAAATGTCATTTTGGAAAAAAATAGAGATA  150

seq1  ACAGGACCTCACAAGTAAGTACTCTGCCACCCAGCCCCACCCCCTCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCTCACAAGTAAGTACTCTGCCACCCAGCCCCACCCCCTCTTCA  200

seq1  CAGAAACAGTGTCACCAAGCCGCCTAGGCTGGCCTCAAACTTGGCATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAGTGTCACCAAGCCGCCTAGGCTGGCCTCAAACTTGGCATCCT  250

seq1  TTTGCCTTAGCCTCTTGAATACCTGGGAGTACAGACCTGTGTCACTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTAGCCTCTTGAATACCTGGGAGTACAGACCTGTGTCACTAAGA  300

seq1  TTGCTGGCATAAGGTTTGAAGATATGAAAAATAATTTTAAATACATATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGCATAAGGTTTGAAGATATGAAAAATAATTTTAAATACATATGT  350

seq1  TATGACATAAAGGCCAGTTTTAAATCTTAGTCCTACAGAAAGTTCCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACATAAAGGCCAGTTTTAAATCTTAGTCCTACAGAAAGTTCCTTGA  400

seq1  AGACTGACAAATGCTTGTTTATGGTTGGTCATCTGAGTGATGCTCCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACAAATGCTTGTTTATGGTTGGTCATCTGAGTGATGCTCCTAAG  450

seq1  AACAAAGAGCAAGGGGTAAGCTGAGTGCTGACCACCAAGAAGCTAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAGCAAGGGGTAAGCTGAGTGCTGACCACCAAGAAGCTAAACTG  500

seq1  TGGCATGATGGAAATATCTGGAACTGATGCCTCAAGAGTCAACTTCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGATGGAAATATCTGGAACTGATGCCTCAAGAGTCAACTTCAGCA  550

seq1  TCAGTCTTCAGCCATTGGTGGTTTGGGGCTAAACTTTGCCATGGCCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTCAGCCATTGGTGGTTTGGGGCTAAACTTTGCCATGGCCTTTG  600

seq1  GGAGCCCAGATAGTCAGATGGCTGCTCCAGTACAAAGTTGTACACTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGATAGTCAGATGGCTGCTCCAGTACAAAGTTGTACACTCTGA  650

seq1  ACTACCTGGAGTTGTAGAATTGTGTAGTCAGCTCTTTCTTTGTTTAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGGAGTTGTAGAATTGTGTAGTCAGCTCTTTCTTTGTTTAAGAT  700

seq1  TTATTGATTTTATGCATATGCGTGTTCTATATGCATGGACATGTCTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATTTTATGCATATGCGTGTTCTATATGCATGGACATGTCTGTCT  750

seq1  TAGTTAGGGTTTTACTGCTGTGAACAGATACCATGACCAAGGCAACTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGGGTTTTACTGCTGTGAACAGATACCATGACCAAGGCAACTCTT  800

seq1  ATAAAGGATAACATTGAATTGGGACTGGCTTACAGGTTCTAAGGTTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGATAACATTGAATTGGGACTGGCTTACAGGTTCTAAGGTTCAGT  850

seq1  CCATTATCATCAAGGCAGGAGCATGGCAGCATCCAGGCAGGCATGGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATCATCAAGGCAGGAGCATGGCAGCATCCAGGCAGGCATGGGGCT  900

seq1  GGAGGAGCTGACAGACCCACCTCGTTCCAAAGGCAGCTAGCAGAAGAATG  950
      |||||||||||||||| |||||||||||||||||||||||||||   |||
seq2  GGAGGAGCTGACAGACTCACCTCGTTCCAAAGGCAGCTAGCAGA--GATG  948

seq1  GCTTCCAGGCTATTAGGAAGAGAGTCTTAAAGCCCACACCCATAGTGACA  1000
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTT-CAGGCTATTAGG-AGAGAGTCTTAAAGCCCACACCCATAGTGACA  996

seq1  CACCTACTCCAACAGGGCCACACCTTCTAATAGTGCCACTCTTTGGACCA  1050
      |  ||||||| ||| || |||||||||| |||||||||||||||||| | 
seq2  C-TCTACTCC-ACA-GGTCACACCTTCT-ATAGTGCCACTCTTTGGATC-  1041

seq1  AGCATATATGAAACATCACAAGATGCATGCCAGAAGAGGGCATTAGATAC  1100
      |||||| ||||||| | ||| |||||||||| ||   ||||||||||  |
seq2  AGCATA-ATGAAAC-TTACAGGATGCATGCC-GAGAGGGGCATTAGAATC  1088

seq1  CATTACAAATGGT  1113
       ||||| ||||||
seq2  AATTAC-AATGGT  1100