BAC Information

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BAC

Clone NameB6Ng01-009P09
Chromosome13 (Build37)
Map Location 72,642,850 - 72,734,472
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042360, Irx1, LOC100042828, LOC100042832, LOC100042836
Downstream geneIrx2, LOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009P09.bB6Ng01-009P09.g
ACCDH845765DH845766
length1681,111
definitionDH845765|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P09, 5' end.DH845766|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,642,850 - 72,643,017)(72,733,348 - 72,734,472)
sequence
acctgtagctattgctcctaacagtatgtaccttgagcacttggtgggga
gtggggtacctcagggtttgcatcagacctgccaaggtttcatctgtgtg
ccttccaaactctttacctacaacagagtgtttgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtg
gaattccgctgggttcttcactctgggtaccaactccaagaactctttac
tggccggatttatgatggatgccatctggtctgataggaggaaacagata
ttgatttttaatattttctcccaacttgtttaccctaggataatactgca
gctgtgtggcagcttgtctccaagtggaaaggattattaccaccgccttt
tgacgggatgaatcacccaggacggcttgaatggctaaagggtagacttt
gatgttatgtcgcttcatttacccttatgactaaatgattattgatttta
tatttttaagctcttgaaacgtgaaaataactcggtggagaaggctggct
gtgttagttttattaatttatttctgcggggcataattcactttggacca
ggttgtgaaggttctgggttcatgaccggctgtagatacagtggcaaaga
aatggcttatttatatagtcattgaaagtagtcccaaaatcaatacagtc
tgggattggatgattaaactcagtccctttgtggggttcattcctgtagc
tgctgccgaaatcagctggactgccccagtttcatgtgatcaagtctaca
aatagcaagtttgttcaagttgaaatatgattttttggctcatcattttt
tttatctgctatgttcactcaatgacgctttaacagcctacggggaaagg
ggttgattgactgcttcactgaaatcagtaatttgcgtccaaacagcctc
ctccaaggacgtctaggatgcagctggatggatcctccaaaggtctcaac
agagactcgcggtagcctgggctcagtgctaggagcatctatctgcagta
agacctaagatgaagactggatctgacgctctctgtgtgttcagtagggg
aggtgtgtcatgcaagtgtctgcagagctctgccttcaggactcctacta
atatgtggtgcttttgtctcaagcatactaaagtcactagactcccttta
tttctcatgacaagctcaagtcaaaggcaatggaggatttgggccttttg
agttcattacacaccctccttcccaagaatttaagatttaacataatccc
ttaatctattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_72642850_72643017
seq2: B6Ng01-009P09.b_51_218

seq1  ACCTGTAGCTATTGCTCCTAACAGTATGTACCTTGAGCACTTGGTGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGCTATTGCTCCTAACAGTATGTACCTTGAGCACTTGGTGGGGA  50

seq1  GTGGGGTACCTCAGGGTTTGCATCAGACCTGCCAAGGTTTCATCTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTACCTCAGGGTTTGCATCAGACCTGCCAAGGTTTCATCTGTGTG  100

seq1  CCTTCCAAACTCTTTACCTACAACAGAGTGTTTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAACTCTTTACCTACAACAGAGTGTTTGTGTGTGTGTGTGTGTG  150

seq1  TGTGTGTGTGTGTGTGTG  168
      ||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTG  168

seq1: chr13_72733348_72734472
seq2: B6Ng01-009P09.g_68_1178 (reverse)

seq1  GAATAGATATGAGGGATTATGTTTAAAATCTTTAAAAATTACTTTGGGGA  50
      |||||||| | ||||||||||||  |||||||   |||||   ||||| |
seq2  GAATAGAT-TAAGGGATTATGTT--AAATCTT---AAATT--CTTGGGAA  42

seq1  GG-GGGTGTGTAAAATGGAACTCAAAAGGCCCAAATCTTCCATTGCCTGT  99
      || ||||||||||    |||||||||||||||||||| |||||||||| |
seq2  GGAGGGTGTGTAA---TGAACTCAAAAGGCCCAAATCCTCCATTGCCTTT  89

seq1  GACTCTGAGCTTGTCATGGAGAAATAAAGGGAGTCTAGTGACTTTAGTAT  149
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACT-TGAGCTTGTCAT-GAGAAATAAAGGGAGTCTAGTGACTTTAGTAT  137

seq1  GCTTGGGACAAAAGCACCACATATTAGGTGGGAGTCCTGAAGGCAGAGCT  199
      ||||| |||||||||||||||||||| || ||||||||||||||||||||
seq2  GCTTGAGACAAAAGCACCACATATTA-GTAGGAGTCCTGAAGGCAGAGCT  186

seq1  CTGCAGACACTTGCATGGACACACCTCCCCTACTGAACACACAGAGGGCG  249
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  CTGCAGACACTTGCAT-GACACACCTCCCCTACTGAACACACAGAGAGCG  235

seq1  TCAGATCCAGTCTTCATCTTAGGTCTTACTGCAGATGGATGCTCCTAGCA  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGATCCAGTCTTCATCTTAGGTCTTACTGCAGATAGATGCTCCTAGCA  285

seq1  CTGAGCCCAGGCTACCGCGGGTCTCTGTTGAGACCTTTGGAGGATCCATC  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGAGCCCAGGCTACCGCGAGTCTCTGTTGAGACCTTTGGAGGATCCATC  335

seq1  CAGCTGCATCCTAGACGTCCTTGGAGGAGGCTGTTTGGACGCAAATTACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCATCCTAGACGTCCTTGGAGGAGGCTGTTTGGACGCAAATTACT  385

seq1  GATTTCAGTGAAGCAGTCAATCAACCCCTTTCCCCGTAGGCTGTTAAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTGAAGCAGTCAATCAACCCCTTTCCCCGTAGGCTGTTAAAGC  435

seq1  GTCATTGAGTGAACATAGCAGATAAAAAAAATGATGAGCCAAAAAATCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGAGTGAACATAGCAGATAAAAAAAATGATGAGCCAAAAAATCAT  485

seq1  ATTTCAACTTGAACAAACTTGCTATTTGTAGACTTGATCACATGAAACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACTTGAACAAACTTGCTATTTGTAGACTTGATCACATGAAACTG  535

seq1  GGGCAGTCCAGCTGATTTCGGCAGCAGCTACAGGAATGAACCCCACAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCCAGCTGATTTCGGCAGCAGCTACAGGAATGAACCCCACAAAG  585

seq1  GGACTGAGTTTAATCATCCAATCCCAGACTGTATTGATTTTGGGACTACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAGTTTAATCATCCAATCCCAGACTGTATTGATTTTGGGACTACT  635

seq1  TTCAATGACTATATAAATAAGCCATTTCTTTGCCACTGTATCTACAGCCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGACTATATAAATAAGCCATTTCTTTGCCACTGTATCTACAGCCG  685

seq1  GTCATGAACCCAGAACCTTCACAACCTGGTCCAAAGTGAATTATGCCCCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAACCCAGAACCTTCACAACCTGGTCCAAAGTGAATTATGCCCCG  735

seq1  CAGAAATAAATTAATAAAACTAACACAGCCAGCCTTCTCCACCGAGTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAAATTAATAAAACTAACACAGCCAGCCTTCTCCACCGAGTTAT  785

seq1  TTTCACGTTTCAAGAGCTTAAAAATATAAAATCAATAATCATTTAGTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGTTTCAAGAGCTTAAAAATATAAAATCAATAATCATTTAGTCAT  835

seq1  AAGGGTAAATGAAGCGACATAACATCAAAGTCTACCCTTTAGCCATTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAAATGAAGCGACATAACATCAAAGTCTACCCTTTAGCCATTCAA  885

seq1  GCCGTCCTGGGTGATTCATCCCGTCAAAAGGCGGTGGTAATAATCCTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCCTGGGTGATTCATCCCGTCAAAAGGCGGTGGTAATAATCCTTTC  935

seq1  CACTTGGAGACAAGCTGCCACACAGCTGCAGTATTATCCTAGGGTAAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAGACAAGCTGCCACACAGCTGCAGTATTATCCTAGGGTAAACA  985

seq1  AGTTGGGAGAAAATATTAAAAATCAATATCTGTTTCCTCCTATCAGACCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGAGAAAATATTAAAAATCAATATCTGTTTCCTCCTATCAGACCA  1035

seq1  GATGGCATCCATCATAAATCCGGCCAGTAAAGAGTTCTTGGAGTTGGTAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATCCATCATAAATCCGGCCAGTAAAGAGTTCTTGGAGTTGGTAC  1085

seq1  CCAGAGTGAAGAACCCAGCGGAATTC  1125
      ||||||||||||||||||||||||||
seq2  CCAGAGTGAAGAACCCAGCGGAATTC  1111