BAC Information

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BAC

Clone NameB6Ng01-010C15
Chromosome13 (Build37)13 (Build37)
Map Location 65,922,802 - 65,923,51166,501,379 - 66,502,369
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010C15.bB6Ng01-010C15.g
ACCDH845913DH845914
length711986
definitionDH845913|Mus musculus domesticus DNA, BAC clone: B6Ng01-010C15, 5' end.DH845914|Mus musculus domesticus DNA, BAC clone: B6Ng01-010C15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,922,802 - 65,923,511)(66,501,379 - 66,502,369)
sequence
gaattcataatcagtgttaggatattcattatggaatgatgttttttttt
gtcatgacagggtttctctgtgtaacagcccagctctcctagaacttgct
ttgcagaccaggctgacctctaactcacagacatgcttgcctctgcctcc
tgagtgctgggataaaaggcatgcaccactataacccagctagataatct
ttttagtcagatgacaaactaagtcagaaattgtggtaggatgaatggtg
tgggtgctgtggtcccagggtggggcctggtagacagttagggaggctcc
catacagctctgaccgtatgagtgcccatgtctgtggcatattgagtgtc
ttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagtt
ggggaggaaagggtttattcggcttacacttccatactgctgttcatcac
caaggaagtcaggactggaactcatgcaggtcaggaagcaggagctgatg
cagaggccatggagggatgttctttactggcttgcctcacctggcttgct
cagcctgctctcttatagaacccaagactaccagcccatagatcttccca
cccacaaggggcctttcccccttgatcactaattgagaaaatgccttaca
gtttggatctcatggaggcattttcctcaagtgaagctcctttctctgta
taactccagct
gaattccaggacagccagggctacataaagaaaccctgtctggaaaaacc
aaaaataaataaataaacaaataaatccatatatcaaccagtaacccaag
gtataaaactcccacccaaacagctcaaaccaagaaaccaaatcacctca
cacccagaggcctagacaccagcaaatgaatataatgaataatagccagg
aaaatatatcaccatcaaatccaagctatcctatcacagcaggtcctgag
aaattgaaacatgcaatagatacagtggaaaaatggttgtttgcggtaac
ggagaggagtgaaaacatgggggaagggatagctgtgcacaagaagacct
gcagacaggcacacagacagagagcagagagagacagccacaagaatagg
gaaatagaatgggggttgggggagagcaagtgcagagaacagagacaggg
aacaaagcacagagctgctgtagctggtggtccatgtatataaagcacac
ctgacaacagcagcaggtgatggagacaggtaacgacttaagcatttgct
aagtctctaagagcaggccattgaatttgctgtacactgtcaaccacgga
ggcaaggttcacccttggtccaggaagggaagagagactctcaggcatta
gagatgaatagaaaaaaatgataaaatggtcaaaaaatatgaatttccaa
atgtttctggcactaaataatcacaattttctgcaacatatgagaaggtg
aaaaagtagaaattatttggaatagaagaagaatatcagctcaaaggtct
agaaaaatattttcagtgaaattatgaatgaaaaattttccaaaactaag
aaaatacctttcaagtacatgagcatccaaaaagcaaatcgattggacaa
aaaagctcttttgccccatacgtcaaactcttaacttaaatgaaagattt
tgatatcggcaccgaaagaaataaatactaaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65922802_65923511
seq2: B6Ng01-010C15.b_45_755

seq1  GAATTCATAATCAGTGTTAGGATATTCATTATGGAATGATGTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATCAGTGTTAGGATATTCATTATGGAATGATGTTTTTTTTT  50

seq1  GTCATGACAGGGTTTCTCTGTGTAACAGCCCAGCTCTCCTAGAACTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGACAGGGTTTCTCTGTGTAACAGCCCAGCTCTCCTAGAACTTGCT  100

seq1  TTGCAGACCAGGCTGACCTCTAACTCACAGACATGCTTGCCTCTGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGACCAGGCTGACCTCTAACTCACAGACATGCTTGCCTCTGCCTCC  150

seq1  TGAGTGCTGGGATAAAAGGCATGCACCACTATAACCCAGCTAGATAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGGGATAAAAGGCATGCACCACTATAACCCAGCTAGATAATCT  200

seq1  TTTTAGTCAGATGACAAACTAAGTCAGAAATTGTGGTAGGATGAATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCAGATGACAAACTAAGTCAGAAATTGTGGTAGGATGAATGGTG  250

seq1  TGGGTGCTGTGGTCCCAGGGTGGGGCCTGGTAGACAGTTAGGGAGGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGTGGTCCCAGGGTGGGGCCTGGTAGACAGTTAGGGAGGCTCC  300

seq1  CATACAGCTCTGACCGTATGAGTGCCCATGTCTGTGGCATATTGAGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGCTCTGACCGTATGAGTGCCCATGTCTGTGGCATATTGAGTGTC  350

seq1  TTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTT  400

seq1  GGGGAGGAAAGGGTTTATTCGGCTTACACTTCCATACTGCTGTTCATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAAAGGGTTTATTCGGCTTACACTTCCATACTGCTGTTCATCAC  450

seq1  CAAGGAAGTCAGGACTGGAACTCATGCAGGTCAGGAAGCAGGAGCTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGTCAGGACTGGAACTCATGCAGGTCAGGAAGCAGGAGCTGATG  500

seq1  CAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCCTCACCTGGCTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCCTCACCTGGCTTGCT  550

seq1  CAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATCTTCCCA  600
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCATAGATCTTCCCA  600

seq1  CCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACA  650

seq1  G-TTGGATCTCATGGAGGCA-TTTCCTCAACTGAAGCTCCTTTCTCTGTG  698
      | |||||||||||||||||| ||||||||| |||||||||||||||||| 
seq2  GTTTGGATCTCATGGAGGCATTTTCCTCAAGTGAAGCTCCTTTCTCTGT-  699

seq1  ATAACTCCAGCT  710
      ||||||||||||
seq2  ATAACTCCAGCT  711

seq1: chr13_66501379_66502369
seq2: B6Ng01-010C15.g_66_1051

seq1  GAATTCCAGGACAGCCAGGGCTACATAAAGAAACCCTGTCTGGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACATAAAGAAACCCTGTCTGGAAAAACC  50

seq1  AAAAATAAATAAATAAACAAATAAATCCATATATCAACCAGTAACCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAATAAACAAATAAATCCATATATCAACCAGTAACCCAAG  100

seq1  GTATAAAACTCCCACCCAAACAGCTCAAACCAAGAAACCAAATCACCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAACTCCCACCCAAACAGCTCAAACCAAGAAACCAAATCACCTCA  150

seq1  AACCCAGAGGCCTAGACACCAGCAAATGAATATAATGAATAATAGCCAGG  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGAGGCCTAGACACCAGCAAATGAATATAATGAATAATAGCCAGG  200

seq1  AAAATATATCACCATCAAATCCAAGCTATCCTATCACAGCAGGTCCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAATATATCACCATCAAATCCAAGCTATCCTATCACAGCAGGTCCTGAG  250

seq1  AAATTGAAACATGCAATAGATACAGTGGAAAAATGGTTGTTTGCGGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAACATGCAATAGATACAGTGGAAAAATGGTTGTTTGCGGTAAC  300

seq1  GGAGAGGAGTGAAAACATGGGGGAAGGGATAGCTGTGCACAAGAAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGTGAAAACATGGGGGAAGGGATAGCTGTGCACAAGAAGACCT  350

seq1  GCAGACAGGCACACAGACAGAGAGCAGAGAGAGACAGCCACAAGAATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGGCACACAGACAGAGAGCAGAGAGAGACAGCCACAAGAATAGG  400

seq1  GAAATAGAATGGGGGTTGGGGGAGAGCAAGTGCAGAGAACAGAGACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAATGGGGGTTGGGGGAGAGCAAGTGCAGAGAACAGAGACAGGG  450

seq1  AACAAAGCACAGAGCTGCTGTAGCTGGTGGTCCATGTATATAAAGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCACAGAGCTGCTGTAGCTGGTGGTCCATGTATATAAAGCACAC  500

seq1  CTGACAACAGCAGCAGGTGATGGAGACAGGTAACGACTTAAGCATTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACAGCAGCAGGTGATGGAGACAGGTAACGACTTAAGCATTTGCT  550

seq1  AAGTCCCTAAGAGCAGGCCATTGAATTTGCTGTACACTGTCAACCACGGA  600
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTAAGAGCAGGCCATTGAATTTGCTGTACACTGTCAACCACGGA  600

seq1  GGCAAGGTTCACCCTTGGTCCAGGAAGGGAAGAGAGACTCTCAGGCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGTTCACCCTTGGTCCAGGAAGGGAAGAGAGACTCTCAGGCATTA  650

seq1  GAGATGAATAGAAAAAAATGATAAAATGGTCAAAAAATATGAA-TTCCAA  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGATGAATAGAAAAAAATGATAAAATGGTCAAAAAATATGAATTTCCAA  700

seq1  ATGTTTCTGGCACTAAATAATCACAA-TTTCTGCAACATATGAGAAGGTG  748
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGTTTCTGGCACTAAATAATCACAATTTTCTGCAACATATGAGAAGGTG  750

seq1  -AAAAGTAGAAATTA-TTGGAAT---AGAAGAATATCAGCTCAAAGGTCT  793
       |||||||||||||| |||||||   ||||||||||||||||||||||||
seq2  AAAAAGTAGAAATTATTTGGAATAGAAGAAGAATATCAGCTCAAAGGTCT  800

seq1  AG-AAAATATTTTCAGTGAAATTATGAATGAAAAATTTTCTAAACTAAAG  842
      || ||||||||||||||||||||||||||||||||||||| |||   |||
seq2  AGAAAAATATTTTCAGTGAAATTATGAATGAAAAATTTTCCAAAACTAAG  850

seq1  AAAATACCTATCAAAGTACAAGAAGCATCCAAAATAGCAAATAGATTGGA  892
      ||||||||| || ||||||| | ||||||||||| ||||||| |||||||
seq2  AAAATACCTTTC-AAGTACATG-AGCATCCAAAA-AGCAAATCGATTGGA  897

seq1  CCAAAAAAGTCCTTTTGCCACATAACAGTCAAAACTCTAAACATATAAAG  942
       ||||||||  |||||||| ||||   ||| ||||||| |||   |||| 
seq2  -CAAAAAAGCTCTTTTGCCCCATA--CGTC-AAACTCTTAAC--TTAAAT  941

seq1  CAAAGAAATATGAAAAACTGCAACAGAAAGAAATAAAAAACTAAATAAA  991
       ||||  || |  | | | || || ||||||||| ||| ||||||||||
seq2  GAAAG--ATTTTGATATCGGC-ACCGAAAGAAAT-AAATACTAAATAAA  986