BAC Information

Click to search

BAC

Clone NameB6Ng01-010L11
Chromosome13 (Build37)
Map Location 8,086,794 - 8,277,248
singlet/doubletdoublet
Overlap geneLOC382722, Adarb2
Upstream geneLOC667611, EG623516, LOC791083
Downstream geneEG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010L11.bB6Ng01-010L11.g
ACCDH846304DH846305
length1,1111,135
definitionDH846304|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L11, 5' end.DH846305|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,276,125 - 8,277,248)(8,086,794 - 8,087,933)
sequence
gaattcactcaagttgtggttaacatcaacactacagagagtatgacatg
tcaaattagcagctttgcaaatctcctgttaattgtcagcctaattaaaa
aattgctaattataatgtttataacttcaaataactgttcagctataaag
tatggcctgtcaggtgtaaacagggtactggagggggaaaaatcaatcga
catctgttaatttatcagcagcagtacactgaattgaaaaatggattgcc
tattgcactgtaaatctgcattacgataaaaagaccaattcattcaacac
ctgcttaataaatggtaatggccatcgttactggcttgccccagggtctc
tttgcttatctaattcccatcctgttttagagtagaaggaaaacacatac
tagttgcacagacagcatacaagaccctttataattccactaaagagaat
tgcttagcagttcacactattttaaagaaattagagaagatacaaataca
aatgaaatatacacataaattatgtagtaaaagtatgaaattgcttctct
ctggaagaagcctgaaacccaaaagcccattacttgatcaccttagtctg
aattcccccaaacctgctagatactgtcaggtgagaaagtttgtacagac
atgagtttctaaaacgtatataattattgtccacgtgtaattcaccatac
acaaaatctacaattattacagcaaatgctttgccagtgcattagattgt
atcaaatgggatcatttcccaatttatccaagtttacttcttttgtgtct
tgtgagcttctgagaataggggtctcctagctaatttcatctttccttac
aacccattaggatctgtggagagaagaggatactgtccattattcgccat
ctccagctcctgttcttttgaggaaagacaaaagcattgactgaagcagc
agtcacaggtaaattatcatttgttaacagtactgccgttgtctagtttt
agtttgaggcattaaaaacatcactgatttttttttttatttcaagtcga
cattatattcagagagtcaagcaaggcagttacaaaggtcttactctgag
agttcaggcta

gaattcccaattccattctgctcataattttacgaccatattgcagttcc
tctttttgcatctgtcctattctttattctaattcccatgtttgtaattt
gtgtgatgtaattgatggtctttagtatgacaatgaacaattaagaaatg
caggccttggtgttcctacagatacaaaaatatcccacattctaagctgt
atttccccaaggccgttatgagaagggaacacacaagtctaaaatttctt
attaaatgtaaaagaattttacttatggaaaagtttcaattttagaaaca
aaacctgtaattgagggagcataaaatagtttatattctacttgcacaac
aggtttgaaatatgtataaactgtggggtgggggctaatgtatattattt
ggcatacttacttttatatgaaaagaatactcaaaatctccactctctca
agactgtattacaatagtattaactatacagataatacatgatctataga
tctcacaaatctggggtaattatgttcagtaaaacaaagcagttttaaga
aaagaggtactgtaaccagagggaagtgagcatgttgcctgcccctgtgc
tctgtgggagacttcggaatcatgctctgctgggcatggcttctggcacc
attctggcccagagcctcaatggaagttgctttcagcctttctaaggtac
aataagccttacctccaaactttgtctctgtaactcctttcatgggtatt
ttgtttcctattctaaggaggaatgaagtatccacccgttggtcttccct
cttcttgattttcttatgttttgcaaattatatcttagatattctatgtc
tctgggcaaatatccacttatcagtgagtgcatatctaatgagttctttt
gtgattgggttacctcactaaaggatgatatccttcagatacatccattt
gtccaagaatttcataaatccattgtttttattagctgagtagtactcca
tgtgtaatgtaccattttttctgtatccattcttctgttgaggggacaag
ctggatccttttacctttgtcaattataataaggctgtatgaacatagtg
gacctgtgtcttcttatcagttggaactcttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_8276125_8277248
seq2: B6Ng01-010L11.b_42_1152 (reverse)

seq1  TAGCCTGAAAACTTCTCAGAGATAAGACCTTTGTAACTGCCCTTGCTAGA  50
      |||||||||    |||||||| ||||||||||||||||| ||||||| ||
seq2  TAGCCTGAA---CTCTCAGAG-TAAGACCTTTGTAACTG-CCTTGCTTGA  45

seq1  CTCTTCTGAATATAATGTCTGACTTGAAATAAAAAAAAAAAATCAGTGAT  100
      ||| ||||||||||||||| |||||||||| |||||||||||||||||||
seq2  CTC-TCTGAATATAATGTC-GACTTGAAAT-AAAAAAAAAAATCAGTGAT  92

seq1  GTTTTTAATGCCTCAAAACTAAAACTAGACAACGGCAGTACTTGTTAACA  150
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  GTTTTTAATGCCTC-AAACTAAAACTAGACAACGGCAGTAC-TGTTAACA  140

seq1  AATTGATAATTTACCTGTGACTGCTGCTTCAGTCAATGCTTTATGTCTAT  200
      || ||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  AA-TGATAATTTACCTGTGACTGCTGCTTCAGTCAATGCTTT-TGTCTTT  188

seq1  CCTCAAAAGAACCAGGAGCTGGAGATGGCGAATAATGGACAGTATCCTCT  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAAGAA-CAGGAGCTGGAGATGGCGAATAATGGACAGTATCCTCT  237

seq1  TCTCTCCACAGATCCTAATGGGTTGTAAGGAAAGATGAAATTAGCTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCACAGATCCTAATGGGTTGTAAGGAAAGATGAAATTAGCTAGGA  287

seq1  GACCCCTATTCTCAGAAGCTCACAAGACACAAAAGAAGTAAACTTGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTATTCTCAGAAGCTCACAAGACACAAAAGAAGTAAACTTGGATA  337

seq1  AATTGGGAAATGATCCCATTTGATACAATCTAATGCACTGGCAAAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGAAATGATCCCATTTGATACAATCTAATGCACTGGCAAAGCATT  387

seq1  TGCTGTAATAATTGTAGATTTTGTGTATGGTGAATTACACGTGGACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAATAATTGTAGATTTTGTGTATGGTGAATTACACGTGGACAATA  437

seq1  ATTATATACGTTTTAGAAACTCATGTCTGTACAAACTTTCTCACCTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATACGTTTTAGAAACTCATGTCTGTACAAACTTTCTCACCTGACA  487

seq1  GTATCTAGCAGGTTTGGGGGAATTCAGACTAAGGTGATCAAGTAATGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAGCAGGTTTGGGGGAATTCAGACTAAGGTGATCAAGTAATGGGC  537

seq1  TTTTGGGTTTCAGGCTTCTTCCAGAGAGAAGCAATTTCATACTTTTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTTTCAGGCTTCTTCCAGAGAGAAGCAATTTCATACTTTTACTA  587

seq1  CATAATTTATGTGTATATTTCATTTGTATTTGTATCTTCTCTAATTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTATGTGTATATTTCATTTGTATTTGTATCTTCTCTAATTTCTT  637

seq1  TAAAATAGTGTGAACTGCTAAGCAATTCTCTTTAGTGGAATTATAAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTGTGAACTGCTAAGCAATTCTCTTTAGTGGAATTATAAAGGG  687

seq1  TCTTGTATGCTGTCTGTGCAACTAGTATGTGTTTTCCTTCTACTCTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATGCTGTCTGTGCAACTAGTATGTGTTTTCCTTCTACTCTAAAA  737

seq1  CAGGATGGGAATTAGATAAGCAAAGAGACCCTGGGGCAAGCCAGTAACGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGGAATTAGATAAGCAAAGAGACCCTGGGGCAAGCCAGTAACGA  787

seq1  TGGCCATTACCATTTATTAAGCAGGTGTTGAATGAATTGGTCTTTTTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTACCATTTATTAAGCAGGTGTTGAATGAATTGGTCTTTTTATC  837

seq1  GTAATGCAGATTTACAGTGCAATAGGCAATCCATTTTTCAATTCAGTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCAGATTTACAGTGCAATAGGCAATCCATTTTTCAATTCAGTGTA  887

seq1  CTGCTGCTGATAAATTAACAGATGTCGATTGATTTTTCCCCCTCCAGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGATAAATTAACAGATGTCGATTGATTTTTCCCCCTCCAGTAC  937

seq1  CCTGTTTACACCTGACAGGCCATACTTTATAGCTGAACAGTTATTTGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTACACCTGACAGGCCATACTTTATAGCTGAACAGTTATTTGAAG  987

seq1  TTATAAACATTATAATTAGCAATTTTTTAATTAGGCTGACAATTAACAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACATTATAATTAGCAATTTTTTAATTAGGCTGACAATTAACAGG  1037

seq1  AGATTTGCAAAGCTGCTAATTTGACATGTCATACTCTCTGTAGTGTTGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGCAAAGCTGCTAATTTGACATGTCATACTCTCTGTAGTGTTGAT  1087

seq1  GTTAACCACAACTTGAGTGAATTC  1124
      ||||||||||||||||||||||||
seq2  GTTAACCACAACTTGAGTGAATTC  1111


seq1: chr13_8086794_8087933
seq2: B6Ng01-010L11.g_67_1201

seq1  GAATTCCCAATTCCATTCTGCTCATAATTTTACGACCATATTGCAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAATTCCATTCTGCTCATAATTTTACGACCATATTGCAGTTCC  50

seq1  TCTTTTTGCATCTGTCCTATTCTTTATTCTAATTCCCATGTTTGTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGCATCTGTCCTATTCTTTATTCTAATTCCCATGTTTGTAATTT  100

seq1  GTGTGATGTAATTGATGGTCTTTAGTATGACAATGAACAATTAAGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGTAATTGATGGTCTTTAGTATGACAATGAACAATTAAGAAATG  150

seq1  CAGGCCTTGGTGTTCCTACAGATACAAAAATATCCCACATTCTAAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTGGTGTTCCTACAGATACAAAAATATCCCACATTCTAAGCTGT  200

seq1  ATTTCCCCAAGGCCGTTATGAGAAGGGAACACACAAGTCTAAAATTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCAAGGCCGTTATGAGAAGGGAACACACAAGTCTAAAATTTCTT  250

seq1  ATTAAATGTAAAAGAATTTTACTTATGGAAAAGTTTCAATTTTAGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGTAAAAGAATTTTACTTATGGAAAAGTTTCAATTTTAGAAACA  300

seq1  AAACCTGTAATTGAGGGAGCATAAAATAGTTTATATTCTACTTGCACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTAATTGAGGGAGCATAAAATAGTTTATATTCTACTTGCACAAC  350

seq1  AGGTTTGAAATATGTATAAACTGTGGGGTGGGGGCTAATGTATATTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGAAATATGTATAAACTGTGGGGTGGGGGCTAATGTATATTATTT  400

seq1  GGCATACTTACTTTTATATGAAAAGAATACTCAAAATCTCCACTCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACTTACTTTTATATGAAAAGAATACTCAAAATCTCCACTCTCTCA  450

seq1  AGACTGTATTACAATAGTATTAACTATACAGATAATACATGATCTATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTATTACAATAGTATTAACTATACAGATAATACATGATCTATAGA  500

seq1  TCTCACAAATCTGGGGTAATTATGTTCAGTAAAACAAAGCAGTTTTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAATCTGGGGTAATTATGTTCAGTAAAACAAAGCAGTTTTAAGA  550

seq1  AAAGAGGTACTGTAACCAGAGGGAAGTGAGCATGTTGCCTGCCCCTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTACTGTAACCAGAGGGAAGTGAGCATGTTGCCTGCCCCTGTGC  600

seq1  TCTGTGGGAGACTTCGGAATCATGCTCTGCTGGGCATGGCTTCTGGCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGAGACTTCGGAATCATGCTCTGCTGGGCATGGCTTCTGGCACC  650

seq1  ATTCTGGCCCAGAGCCTCAATGGAAGTTGCTTTCAGCCTTTCTAAGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGCCCAGAGCCTCAATGGAAGTTGCTTTCAGCCTTTCTAAGGTAC  700

seq1  AATAAGCCTTACCTCCAAACTTTGTCTCTGTAACTCCTTTCATGGGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCTTACCTCCAAACTTTGTCTCTGTAACTCCTTTCATGGGTATT  750

seq1  TTGTTTCCTATTCTAAGGAGGAATGAAGTATCCACCCGTTGGTCTTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTATTCTAAGGAGGAATGAAGTATCCACCCGTTGGTCTTCCCT  800

seq1  CTTCTTGATTTTCTTATGTTTTGCAAATTATATCTTAGATATTCTATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGATTTTCTTATGTTTTGCAAATTATATCTTAGATATTCTATGTC  850

seq1  TCTGGGCAAATATCCACTTATCAGTGAGTGCATATCTAATGAGTTCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCAAATATCCACTTATCAGTGAGTGCATATCTAATGAGTTCTTTT  900

seq1  GTGATTGGGTTACCTCACT-AAGGATGATATCCTTCAGATACATCCATTT  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGATTGGGTTACCTCACTAAAGGATGATATCCTTCAGATACATCCATTT  950

seq1  GTCCAAGAATTTCATAAATCCATTGTTTTTAATAGCTGAGTAGTACTCCA  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTCCAAGAATTTCATAAATCCATTGTTTTTATTAGCTGAGTAGTACTCCA  1000

seq1  TGTGTAAATGTACCATTTTTTCTGTATCCATTCTTCTGTTGA-GGGAC-A  1047
      ||||| |||||||||||||||||||||||||||||||||||| ||||| |
seq2  TGTGT-AATGTACCATTTTTTCTGTATCCATTCTTCTGTTGAGGGGACAA  1049

seq1  GCTGGGTTCTTTCCAGCTTTTGGCTATTATAAATAAGGCTGATATGAACA  1097
      ||||| | ||||    | |||| | ||||| |||||||||| ||||||||
seq2  GCTGGATCCTTT--TACCTTTGTCAATTAT-AATAAGGCTG-TATGAACA  1095

seq1  TAGTGGAGCATGTGTCCTTCTTACCAGTTGGAACTTCTTCTGG  1140
      ||||||| | ||||| ||||||| |||||||||| ||||||||
seq2  TAGTGGA-CCTGTGT-CTTCTTATCAGTTGGAAC-TCTTCTGG  1135


| Home | SequenceCutter | Blast | Download |