BAC Information

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BAC

Clone NameB6Ng01-011E02
Chromosome13 (Build37)
Map Location 89,569,565 - 89,764,839
singlet/doubletdoublet
Overlap geneHapln1, EG667266
Upstream geneLOC667230, EG435375, Edil3
Downstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011E02.bB6Ng01-011E02.g
ACCDH846687DH846688
length979944
definitionDH846687|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E02, 5' end.DH846688|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,569,565 - 89,570,471)(89,763,895 - 89,764,839)
sequence
gaattctttgttgtgctctggttgtctctcacagcccctattcgaaccag
agttttatgtggaccaaccaaatcacacatacactagtgttttccatatt
tgaggatctggatgggaaggggtatctaggaccttataaatacaaagcaa
aactctaccactaagctataaccatagtctcatttttcacttttaatttt
gaggcaagatctcatttgttttcccaggtgccttgaactcattatcctcc
atccttggcaagcaaagaatctaggactacaagcaagagaatccaggtcc
tagtttttcacagaacatattttgtgggctgaactccatttcctgaaccc
ctcacattatgtttattgttcttattcagttagcctatcctttaattatg
aagcatttcagtgatgcaggatacttgatcatgctataaaacctaagagt
atgttgcttactggaataacctatttctagttgtggtgtggctcagcctt
aaaacacacctttaaccggccccaaaattgaaagtaaaattagtttgtag
aaggaaatagatatgtttgaaagtactatctattgagttatagataaagt
gatgaatcagagaaatatttgacagaataagatatgcccaactctcagga
gaggacagaggaaaaggaagttataggagggatcgatacagaaagagaga
aagaagacaagaggcggttttaccaggacagttatacgaagacaggttgt
agagagaaaacaagctaaacatgggtgaagacagaaagagctaaagaatg
ataaggaagcagaagattagaacatattgccaaaggtagtaggaggccaa
gcagagcaattcacgagaagcccagagaagccagactgaatcagtcagct
tagagaagaatatgagacaaacagataaccagagagctaaaaagtgtgag
tttattcagtagcaagtcttagaggccga
gaattctattcactgttagccctacattcttgggcatgtaggctctgcct
ttagttctacatttattagtaaagttaccatgttttcctctttaccaaag
cactgcaaagatatgcttagaataaagtggtaaaccaccttatttgttaa
tattcaaaggaattgtgctatagttagtctcagaatacagctattttgta
gttgaccattagcagctcataatgcagtttcatttggaagttaattgtat
atattaaactatgtgcaatctatacaaaccttaagacaggatatcaatat
ttaatcctgactgtcttagaaattgctatactgaccagagtagcgtttat
atcagaaagatctgcttttcttagcttcccaagttctaggattaaagaca
tgcatatcatacctggcctttaatcatcttcctgtcaataaaccaagagt
ttaggttttaaaaaataaatatataagttatttaattttatttctatgtg
cattggtgtaagggtgtcagatagcctggaactggagtgacagacagttg
tgagttgtaatgtgggtgctgggaattgagcccaggtcttctggaagagc
agtcagtgcttttaaccacggagacatttctccagtcagaagagtacagt
ttaaataagcaaactatgaaatgtttaaagatcgatagtttggatgactt
ctatagaactaaacacagataaatataaaattagttaaaatgaaattaaa
cacaaatttggtttctttcttttctattatattgaggttttttcttagga
ctcaaggaatttccctttatccatctccaatttattcttggaactaaagt
tctgatactggactttaaggttcccaaaagtctttctcctcaaacatgaa
ttcttatctcctatgacttatcacacccacacgccccacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89569565_89570471
seq2: B6Ng01-011E02.b_45_951

seq1  GAATTCTTTGTTGTGCTCTGGTTGTCTCTCACAGCCCCTATTCGAACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTGTGCTCTGGTTGTCTCTCACAGCCCCTATTCGAACCAG  50

seq1  AGTTTTATGTGGACCAACCAAATCACACATACACTAGTGTTTTCCATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATGTGGACCAACCAAATCACACATACACTAGTGTTTTCCATATT  100

seq1  TGAGGATCTGGATGGGAAGGGGTATCTAGGACCTTATAAATACAAAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATCTGGATGGGAAGGGGTATCTAGGACCTTATAAATACAAAGCAA  150

seq1  AACTCTACCACTAAGCTATAACCATAGTCTCATTTTTCACTTTTAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACCACTAAGCTATAACCATAGTCTCATTTTTCACTTTTAATTTT  200

seq1  GAGGCAAGATCTCATTTGTTTTCCCAGGTGCCTTGAACTCATTATCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGATCTCATTTGTTTTCCCAGGTGCCTTGAACTCATTATCCTCC  250

seq1  ATCCTTGGCAAGCAAAGAATCTAGGACTACAAGCAAGAGAATCCAGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGGCAAGCAAAGAATCTAGGACTACAAGCAAGAGAATCCAGGTCC  300

seq1  TAGTTTTTCACAGAACATATTTTGTGGGCTGAACTCCATTTCCTGAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTCACAGAACATATTTTGTGGGCTGAACTCCATTTCCTGAACCC  350

seq1  CTCACATTATGTTTATTGTTCTTATTCAGTTAGCCTATCCTTTAATTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTATGTTTATTGTTCTTATTCAGTTAGCCTATCCTTTAATTATG  400

seq1  AAGCATTTCAGTGATGCAGGATACTTGATCATGCTATAAAACCTAAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTCAGTGATGCAGGATACTTGATCATGCTATAAAACCTAAGAGT  450

seq1  ATGTTGCTTACTGGAATAACCTATTTCTAGTTGTGGTGTGGCTCAGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTTACTGGAATAACCTATTTCTAGTTGTGGTGTGGCTCAGCCTT  500

seq1  AAAACACACCTTTAACCGGCCCCAAAATTGAAAGTAAAATTAGTTTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACACCTTTAACCGGCCCCAAAATTGAAAGTAAAATTAGTTTGTAG  550

seq1  AAGGAAATAGATATGTTTGAAAGTACTATCTATTGAGTTATAGATAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATAGATATGTTTGAAAGTACTATCTATTGAGTTATAGATAAAGT  600

seq1  GATGAATCAGAGAAATATTTGACAGAATAAGATATGCCCAACTCTCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATCAGAGAAATATTTGACAGAATAAGATATGCCCAACTCTCAGGA  650

seq1  GAGGACAGAGGAAAAGGAAGTTATAGGAGGGATCGATACAGAAAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGAGGAAAAGGAAGTTATAGGAGGGATCGATACAGAAAGAGAGA  700

seq1  AAGAAGACAAGAGGCGGTTTTACCAGGACAGTTATACGAAGACAGGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACAAGAGGCGGTTTTACCAGGACAGTTATACGAAGACAGGTTGT  750

seq1  AGAGAGAAAACAAGCTAAACATGGGTGAAGACAGAAAGAGCTAAAGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAACAAGCTAAACATGGGTGAAGACAGAAAGAGCTAAAGAATG  800

seq1  ATAAGGAAGCAGAAGATTAGAACATATTGCCAAAGGTAGTAGGAGGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAGCAGAAGATTAGAACATATTGCCAAAGGTAGTAGGAGGCCAA  850

seq1  GCAGAGCAATTCAGGAGAAGCCCAGAGAAGCCAGACTGAATCAGTCAGCT  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAATTCACGAGAAGCCCAGAGAAGCCAGACTGAATCAGTCAGCT  900

seq1  TAGAGAA  907
      |||||||
seq2  TAGAGAA  907

seq1: chr13_89763895_89764839
seq2: B6Ng01-011E02.g_67_1010 (reverse)

seq1  TGTGTGT-GGGTGTGTGGGTGTGATAAGTCATAGGAGATAAGAATTCATT  49
      ||||||| ||| |||||||||||||||||||||||||||||||||||| |
seq2  TGTGTGTGGGGCGTGTGGGTGTGATAAGTCATAGGAGATAAGAATTCA-T  49

seq1  GTTTGAGGAGAAAGACCTTTTGGGAACCTTAAAGTCCAGTATCAGAACTT  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGAGAAAGA-CTTTTGGGAACCTTAAAGTCCAGTATCAGAACTT  98

seq1  TAGTTCCAAGAATAAATTGGAGATGGATAAAGGG-AATTCCTTGAGTCCT  148
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAGTTCCAAGAATAAATTGGAGATGGATAAAGGGAAATTCCTTGAGTCCT  148

seq1  AAGAAAAAACCTCAATATAATAGAAAAGAAAGAAACCAAATTTGTGTTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAACCTCAATATAATAGAAAAGAAAGAAACCAAATTTGTGTTTA  198

seq1  ATTTTCATTTTAACTAATTTTATATTTATCTGTGTTTAGTTCTATAGAAG  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTCATTTTAACTAATTTTATATTTATCTGTGTTTAGTTCTATAGAAG  247

seq1  TCATCCAAACTATCGATCTTTAAACATTTCATAGTTTGCTTATTTAAACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAAACTATCGATCTTTAAACATTTCATAGTTTGCTTATTTAAACT  297

seq1  GTACTCTTCTGACTGGAGAAATGTCTCCGTGGTTAAAAGCACTGACTGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTTCTGACTGGAGAAATGTCTCCGTGGTTAAAAGCACTGACTGCT  347

seq1  CTTCCAGAAGACCTGGGCTCAATTCCCAGCACCCACATTACAACTCACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAAGACCTGGGCTCAATTCCCAGCACCCACATTACAACTCACAA  397

seq1  CTGTCTGTCACTCCAGTTCCAGGCTATCTGACACCCTTACACCAATGCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCACTCCAGTTCCAGGCTATCTGACACCCTTACACCAATGCAC  447

seq1  ATAGAAATAAAATTAAATAACTTATATATTTATTTTTTAAAACCTAAACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATAAAATTAAATAACTTATATATTTATTTTTTAAAACCTAAACT  497

seq1  CTTGGTTTATTGACAGGAAGATGATTAAAGGCCAGGTATGATATGCATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTATTGACAGGAAGATGATTAAAGGCCAGGTATGATATGCATGT  547

seq1  CTTTAATCCTAGAACTTGGGAAGCTAAGAAAAGCAGATCTTTCTGATATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCTAGAACTTGGGAAGCTAAGAAAAGCAGATCTTTCTGATATA  597

seq1  AACGCTACTCTGGTCAGTATAGCAATTTCTAAGACAGTCAGGATTAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTACTCTGGTCAGTATAGCAATTTCTAAGACAGTCAGGATTAAATA  647

seq1  TTGATATCCTGTCTTAAGGTTTGTATAGATTGCACATAGTTTAATATATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATCCTGTCTTAAGGTTTGTATAGATTGCACATAGTTTAATATATA  697

seq1  CAATTAACTTCCAAATGAAACTGCATTATGAGCTGCTAATGGTCAACTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACTTCCAAATGAAACTGCATTATGAGCTGCTAATGGTCAACTAC  747

seq1  AAAATAGCTGTATTCTGAGACTAACTATAGCACAATTCCTTTGAATATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCTGTATTCTGAGACTAACTATAGCACAATTCCTTTGAATATTA  797

seq1  ACAAATAAGGTGGTTTACCACTTTATTCTAAGCATATCTTTGCAGTGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAGGTGGTTTACCACTTTATTCTAAGCATATCTTTGCAGTGCTT  847

seq1  TGGTAAAGAGGAAAACATGGTAACTTTACTAATAAATGTAGAACTAAAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGAGGAAAACATGGTAACTTTACTAATAAATGTAGAACTAAAGG  897

seq1  CAGAGCCTACATGCCCAAGAATGTAGGGCTAACAGTGAATAGAATTC  945
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTACATGCCCAAGAATGTAGGGCTAACAGTGAATAGAATTC  944