BAC Information

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BAC

Clone NameB6Ng01-011E12
Chromosome13 (Build37)
Map Location 5,586,209 - 5,730,483
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011E12.bB6Ng01-011E12.g
ACCDH846707DH846708
length1,0551,094
definitionDH846707|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E12, 5' end.DH846708|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,729,430 - 5,730,483)(5,586,209 - 5,587,300)
sequence
gaattccatgttctatgtctcatgggtatagaataatgaaataactgtta
ttttatagtacttccagtccatgtgtggatccatctcctgaaattatctg
ttgagtttctttccagcaggagactaaaagactaaggaatcattctgtac
attgtatctttttagatccagtgcattattctttaacaatgctttgttaa
gaagctacattgtggtgagaggcgtgaataagcttattatactacctgtt
cctctgtcagaaatcttgagcatggttccttgaacccacaatcccttgga
gatcccataactacctgacactttagctccaggggacctaaactcctatt
ctgatttgtgaagttgtctgtacacacacacacacacacacacacacaca
cacacacacacaaaaccactcacgttaacaaaaaaagaaagaatatgctt
tgctgtcttttaaaacaagtttagaaatgctaaaaataaggtatgaaatg
aattttcaaaaatatggttttggggtgtagcttccccagcaccactccca
cagggtggcatggggtacacttgtcatctcagcaatagacaggaagatca
gcacttcaaggtcaatcctgactacacactaggttagaagccagcttaga
ctgttttgaagggaaaggagggggaaagggacagaactgttggtactctg
tctggactccacccccacagctaccagccaggtaggcctggcccactata
aaaggggctgcttgccccctcctcttttctcgagtctctcttacttttag
tctctcactcttgcttctctccccattcccttccccccctgccccctccc
cctccatggtcatgggtggcctctacttctctactctcttttttttctct
gcttttctctggctctactaccctcttacttccctccccatattctgaat
aaactctattcaataccatactgtcatggggctggtccaatcagggggaa
gggatgccttgggcatgggcctgactggccctagggatgttttggtaagg
ctgga

gaattcagcacatttgggaataggtgctttggctgtgcagatgtgttggg
atgagatctgaaaataggaggggaagttgcaagattggacttcttggatc
catataaattaaagcaatgaataaattcatcatgggcttctccagagcac
agttttcactttccagaatggatggatcaatttctgagagcaataggtca
gcctatagttttaaaatgacacagtgtgataaacataatacaatggtttg
gacaagaatgtagctgagtgtagtttggaaggatgaatatttgactatag
aataaagcacagtaagggatgagaaaatcataattgaaacatggaagtcc
acttaggactgtctatagctatgtcactgtggagagaggtaaatactcca
aaaaacaaacactcagaataatcaattctgtcttaccacattccccagga
tgactgggccagctatggactaaaacactctgaaatcattagccaaaata
aatatttcattctttgatttttttccacagatgtctcttcatattgatta
acactcttatgtaagtcatagagacatgcatccttatcatcctatgttaa
gagcaaaattacaaatgtgtcataaatatttttctatatcccaaataacc
accattctcagttctagaatatcttgttgctacaggcaacaataagcaat
attatcaccactcaacaggttgtaaagtacctaatttatgccatcaagta
taggtcaagttaaagctataaatgagataaattcagtcttttctctcatg
gagggccaagactcaaaacctgtatatatattttcttttgagcctttttt
atggaaatgattttccagcaattagaaaagacaaaacaaaacaaaacaaa
caaccctgaaaagtgcatggaataggtccttccttttccctaccttcttg
atatacagaatggaatagaaacaacttatcaggatctattcacatattaa
aatggcatttttatgagaataataagaacattaatctgatagtttggctc
tgcatgaagactagcctttacttaactgaatccatttcaaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5729430_5730483
seq2: B6Ng01-011E12.b_48_1102 (reverse)

seq1  TCCAGGCCTTACCAAAACATCCCTAGGGCCATGTCAGGCCCATG-CCAAG  49
      |||| |||||||||||||||||||||||||| |||||||||||| |||||
seq2  TCCA-GCCTTACCAAAACATCCCTAGGGCCA-GTCAGGCCCATGCCCAAG  48

seq1  GCATCCCTTCCCCCTGA-TGGACCAGCCCCATGACAGTATGGTATTGAAT  98
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCATCCCTTCCCCCTGATTGGACCAGCCCCATGACAGTATGGTATTGAAT  98

seq1  AGAGTTTATTCAGAATATGGGGAGGGGAGTTAAGAGGGTAGTAGAGCCAG  148
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  AGAGTTTATTCAGAATATGGGGAGGGAAG-TAAGAGGGTAGTAGAGCCAG  147

seq1  AGAAAAGCAGAG-AGAAAAAGAGAGTAGAGAAGTAGAGGCCACCCATGAC  197
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCAGAGAAAAAAAAGAGAGTAGAGAAGTAGAGGCCACCCATGAC  197

seq1  CATGGAGGGGGAGGGGGCAGGGGGGGAAGGGAATGGGGAGAGAAGCAAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGGGGAGGGGGCAGGGGGGGAAGGGAATGGGGAGAGAAGCAAGA  247

seq1  GTGAGAGACTAAAAGTAAGAGAGACTCGAG-AAAGAGGAGGGGGCAAGCA  296
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGAGAGACTAAAAGTAAGAGAGACTCGAGAAAAGAGGAGGGGGCAAGCA  297

seq1  GCCCCTTTTATAGTGGGCCAGGCCTACCTGGCTGGTAGCTGTGGGGGTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTTTATAGTGGGCCAGGCCTACCTGGCTGGTAGCTGTGGGGGTGG  347

seq1  AGTCCAGACAGAGTACCAACAGTTCTGTCCCTTTCCCCCTCCTTTCCCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGACAGAGTACCAACAGTTCTGTCCCTTTCCCCCTCCTTTCCCTT  397

seq1  CAAAACAGTCTAAGCTGGCTTCTAACCTAGTGTGTAGTCAGGATTGACCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGTCTAAGCTGGCTTCTAACCTAGTGTGTAGTCAGGATTGACCT  447

seq1  TGAAGTGCTGATCTTCCTGTCTATTGCTGAGATGACAAGTGTACCCCATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGCTGATCTTCCTGTCTATTGCTGAGATGACAAGTGTACCCCATG  497

seq1  CCACCCTGTGGGAGTGGTGCTGGGGAAGCTACACCCCAAAACCATATTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGTGGGAGTGGTGCTGGGGAAGCTACACCCCAAAACCATATTTT  547

seq1  TGAAAATTCATTTCATACCTTATTTTTAGCATTTCTAAACTTGTTTTAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTCATTTCATACCTTATTTTTAGCATTTCTAAACTTGTTTTAAA  597

seq1  AGACAGCAAAGCATATTCTTTCTTTTTTTGTTAACGTGAGTGGTTTTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAAAGCATATTCTTTCTTTTTTTGTTAACGTGAGTGGTTTTGTG  647

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGACAACTTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGACAACTTCA  697

seq1  CAAATCAGAATAGGAGTTTAGGTCCCCTGGAGCTAAAGTGTCAGGTAGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGAATAGGAGTTTAGGTCCCCTGGAGCTAAAGTGTCAGGTAGTT  747

seq1  ATGGGATCTCCAAGGGATTGTGGGTTCAAGGAACCATGCTCAAGATTTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATCTCCAAGGGATTGTGGGTTCAAGGAACCATGCTCAAGATTTCT  797

seq1  GACAGAGGAACAGGTAGTATAATAAGCTTATTCACGCCTCTCACCACAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGAACAGGTAGTATAATAAGCTTATTCACGCCTCTCACCACAAT  847

seq1  GTAGCTTCTTAACAAAGCATTGTTAAAGAATAATGCACTGGATCTAAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTCTTAACAAAGCATTGTTAAAGAATAATGCACTGGATCTAAAAA  897

seq1  GATACAATGTACAGAATGATTCCTTAGTCTTTTAGTCTCCTGCTGGAAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAATGTACAGAATGATTCCTTAGTCTTTTAGTCTCCTGCTGGAAAG  947

seq1  AAACTCAACAGATAATTTCAGGAGATGGATCCACACATGGACTGGAAGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAACAGATAATTTCAGGAGATGGATCCACACATGGACTGGAAGTA  997

seq1  CTATAAAATAACAGTTATTTCATTATTCTATACCCATGAGACATAGAACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAATAACAGTTATTTCATTATTCTATACCCATGAGACATAGAACA  1047

seq1  TGGAATTC  1054
      ||||||||
seq2  TGGAATTC  1055


seq1: chr13_5586209_5587300
seq2: B6Ng01-011E12.g_67_1160

seq1  GAATTCAGCACATTTGGGAATAGGTGCTTTGGCTGTGCAGATGTGTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACATTTGGGAATAGGTGCTTTGGCTGTGCAGATGTGTTGGG  50

seq1  ATGAGATCTGAAAATAGGAGGGGAAGTTGCAAGATTGGACTTCTTGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCTGAAAATAGGAGGGGAAGTTGCAAGATTGGACTTCTTGGATC  100

seq1  CATATAAATTAAAGCAATGAATAAATTCATCATGGGCTTCTCCAGAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAATTAAAGCAATGAATAAATTCATCATGGGCTTCTCCAGAGCAC  150

seq1  AGTTTTCACTTTCCAGAATGGATGGATCAATTTCTGAGAGCAATAGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCACTTTCCAGAATGGATGGATCAATTTCTGAGAGCAATAGGTCA  200

seq1  GCCTATAGTTTTAAAATGACACAGTGTGATAAACATAATACAATGGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAGTTTTAAAATGACACAGTGTGATAAACATAATACAATGGTTTG  250

seq1  GACAAGAATGTAGCTGAGTGTAGTTTGGAAGGATGAATATTTGACTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAATGTAGCTGAGTGTAGTTTGGAAGGATGAATATTTGACTATAG  300

seq1  AATAAAGCACAGTAAGGGATGAGAAAATCATAATTGAAACATGGAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCACAGTAAGGGATGAGAAAATCATAATTGAAACATGGAAGTCC  350

seq1  ACTTAGGACTGTCTATAGCTATGTCACTGTGGAGAGAGGTAAATACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGACTGTCTATAGCTATGTCACTGTGGAGAGAGGTAAATACTCCA  400

seq1  AAAAACAAACACTCAGAATAATCAATTCTGTCTTACCACATTCCCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACACTCAGAATAATCAATTCTGTCTTACCACATTCCCCAGGA  450

seq1  TGACTGGGCCAGCTATGGACTAAAACACTCTGAAATCATTAGCCAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGCCAGCTATGGACTAAAACACTCTGAAATCATTAGCCAAAATA  500

seq1  AATATTTCATTCTTTGATTTTTTTCCACAGATGTCTCTTCATATTGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCATTCTTTGATTTTTTTCCACAGATGTCTCTTCATATTGATTA  550

seq1  ACACTCTTATGTAAGTCATAGAGACATGCATCCTTATCATCCTATGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTATGTAAGTCATAGAGACATGCATCCTTATCATCCTATGTTAA  600

seq1  GAGCAAAATTACAAATGTGTCATAAATATTTTTCTATATCCCAAATAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAATTACAAATGTGTCATAAATATTTTTCTATATCCCAAATAACC  650

seq1  ACCATTCTCAGTTCTAGAATATCTTGTTGCTACAGGCAACAATAAGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTCAGTTCTAGAATATCTTGTTGCTACAGGCAACAATAAGCAAT  700

seq1  ATTATCACCACTCAACAGG-TGTAAAGTACCTAATTTATGCCATCAAGTA  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTATCACCACTCAACAGGTTGTAAAGTACCTAATTTATGCCATCAAGTA  750

seq1  TAGGTCAAGTTAAAGCTATAAATGAGATAAATTCAGTCTTTTCTCTCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAAGTTAAAGCTATAAATGAGATAAATTCAGTCTTTTCTCTCATG  800

seq1  GAGGGCCAAGACTCAAAACCTGTATATATATTTTCTTTTGAGCCTTTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCAAGACTCAAAACCTGTATATATATTTTCTTTTGAGCCTTTTTT  850

seq1  ATGGAAATGATTTTCCAGCAATTAGAAAAGACAAAACAAAACAAAACAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGGAAATGATTTTCCAGCAATTAGAAAAGACAAAACAAAACAAAAC-AA  899

seq1  ACAACCCTGAAAGGTGCATGG-ATAGGTCTTCCTTTTTCCCTA-CTTC-T  946
      |||||||||||| |||||||| ||||||| | | ||||||||| |||| |
seq2  ACAACCCTGAAAAGTGCATGGAATAGGTCCTTCCTTTTCCCTACCTTCTT  949

seq1  GATAATACAGAATGG-ATAGAAACAACTTATCAGGATCTTATTCACATAT  995
      ||| ||||||||||| |||||||||||||||||||||| |||||||||| 
seq2  GAT-ATACAGAATGGAATAGAAACAACTTATCAGGATC-TATTCACATA-  996

seq1  TTAAAATGGCATTTTTATGAGAATAATAAGAACATTTATCTGTAGGTTTG  1045
      |||||||||||||||||||||||||||||||||||| |||||   |||||
seq2  TTAAAATGGCATTTTTATGAGAATAATAAGAACATTAATCTGATAGTTTG  1046

seq1  GCTCTGCATGAGGACTAGCCTTTACCTTACTG-ATCCATTTCTAAGAC  1092
      ||||||||||| ||||||||||||| | |||| ||||||||| |||||
seq2  GCTCTGCATGAAGACTAGCCTTTACTTAACTGAATCCATTTCAAAGAC  1094


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