BAC Information

Click to search

BAC

Clone NameB6Ng01-011E18
Chromosome13 (Build37)
Map Location 21,033,578 - 21,034,643
singlet/doubletsinglet
Overlap geneAoah
Upstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011E18.bB6Ng01-011E18.g
ACCDH846719DH846720
length1,0651,188
definitionDH846719|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E18, 5' end.DH846720|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tgcatgtttagaatgagaaacccaaccagttccattattgacacacaaat
atcaactagggaaaatttccatgtatttccatgcacaggtaactggactg
agttgcactttactttctttttccaagaccatatactcaaggtgacattg
gctggagagactcatattcatatgaaagtagcaatgcatggtgggagttc
tgagttggggcccttccttccctaccctgcccacttctattagcggtgtg
accttggtcaagtttcttaatatgcctatttaactttagatccttagctg
caaaatgaaataaaacaagataatctccctaggactctgtatgggtgtgg
tcctaggatacacactttgggttctcagtcaacatccatcatatgaatcc
aactgacttattggagtatagcctgtgttcaaatccagagcactgaagct
aggataattcacagaccctccaatgaattcccagttaattttatctatta
tttttgttattgttagtttgttggatcaaacatcaagtaaactgctctgt
cccttgagtcagaaaaattcacaaatgtgcttgagtattttctattgaat
gtaaattgtagcccccagtaggcacattgcttcctccctgtagaccagac
cctgttgcggtggctggaccacatcagtggcaggctttgtatatgttact
catggtctagaagcatctcaaataattttcattttagtatcttgggagca
agctccagctcctattctctctgtatacaggtgagatacagtgtgtgggt
gtgccaatagcatgggagtgtgccaacagcatgagagtgggccaacagta
tgggagtgtgccaacatacccactcgtggagtccagaaatccagttacac
cagagagttggggccagttgagctcatcggtaagggcggacggcaagttg
agaaggagttctaagggaaagaagtaataaggtagtaattattcagggac
actttgttcttgagccatggcaccttaaagaagaatggtatttgtgactg
ccacctgaagaatta
gaattctcacttgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacacatgtcagaatggctaagataaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacgctcctccattgttggtg
ggattacaagcttgtacaaccactctggaaatcagtctgatggttcctca
gaaaattggacatagtactaccgggggatcccgcaatacctctcctgggc
atatatccagaagatgttccaactagtaagaaagacacatgttccactat
gttcatagcagcctcatttgtaatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggggggcatcatcctgagtgtggtaacccaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagaatacccaagatataagatacaatttgtaaaacacatggaactcaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagcattggga
acaaaacacccatggaaggagctacagagacagagtttggagctgagacg
aaaggatggaccatctagagactgctatatccaggaaatccatcctataa
tcagccttcaaatgctgacatcatttgcatacactaccaagaattttgct
gaaaggaccctgatatagctgtctcttgtgatactaggccggggcctagc
aacacagaagtggatgctcacagtcactattggatggattacagggctcc
caatggagaagcttgagaagtacctcaaggagtaaagggattctgcaact
ctatagggtgggaacacattatgactaatcagtactcccagagctccttg
gacatctagcctgccttagtatcaaaaggaatggccctatctgtcatacc
tggaggtaatgtccaatgtgatcactgtaccttactagtcctcgttacca
ggaactcctaggtcaaaagtgtcagtggggtatagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21033578_21034643
seq2: B6Ng01-011E18.b_55_1118 (reverse)

seq1  AATTC-TCAGGTGGCAGTCACAGATTAACCA-TCTTCTTT-AGGTGCCAA  47
      ||||| |||||||||||||||| ||  |||| |||||||| ||||||| |
seq2  AATTCTTCAGGTGGCAGTCACAAAT--ACCATTCTTCTTTAAGGTGCC-A  47

seq1  TGGCTCAGGAACAAAGTGTCCCTGGAATAATTACTACCTTATTACTTCTT  97
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGCTCAAGAACAAAGTGTCCCT-GAATAATTACTACCTTATTACTTCTT  96

seq1  TCCCTTAGAACTCCTTCCTCAACCTGCCGTCCGCCCTTACCGATGAGCTC  147
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TCCCTTAGAACTCCTT-CTCAACTTGCCGTCCGCCCTTACCGATGAGCTC  145

seq1  AACTGGCCCCAACTCTCTGGTGTAACTGGATTTCTGGACTCCACGAGTGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCCCCAACTCTCTGGTGTAACTGGATTTCTGGACTCCACGAGTGG  195

seq1  GTATGTTGGCACACTCCCATACTGTTGGCCCACTCTCATGCTGTTGGCAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTGGCACACTCCCATACTGTTGGCCCACTCTCATGCTGTTGGCAC  245

seq1  ACTCCCATGCTATTGGCACACCCACACACTGTATCTCACCTGTATACAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCATGCTATTGGCACACCCACACACTGTATCTCACCTGTATACAGA  295

seq1  GAGAATAGGAGCTGGAGCTTGCTCCCAAGATACTAAAATGAAAATTATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGGAGCTGGAGCTTGCTCCCAAGATACTAAAATGAAAATTATTT  345

seq1  GAGATGCTTCTAGACCATGAGTAACATATACAAAGCCTGCCACTGATGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTTCTAGACCATGAGTAACATATACAAAGCCTGCCACTGATGTG  395

seq1  GTCCAGCCACCGCAACAGGGTCTGGTCTACAGGGAGGAAGCAATGTGCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCCACCGCAACAGGGTCTGGTCTACAGGGAGGAAGCAATGTGCCT  445

seq1  ACTGGGGGCTACAATTTACATTCAATAGAAAATACTCAAGCACATTTGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGGCTACAATTTACATTCAATAGAAAATACTCAAGCACATTTGTG  495

seq1  AATTTTTCTGACTCAAGGGACAGAGCAGTTTACTTGATGTTTGATCCAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTGACTCAAGGGACAGAGCAGTTTACTTGATGTTTGATCCAAC  545

seq1  AAACTAACAATAACAAAAATAATAGATAAAATTAACTGGGAATTCATTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACAATAACAAAAATAATAGATAAAATTAACTGGGAATTCATTGG  595

seq1  AGGGTCTGTGAATTATCCTAGCTTCAGTGCTCTGGATTTGAACACAGGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGTGAATTATCCTAGCTTCAGTGCTCTGGATTTGAACACAGGCT  645

seq1  ATACTCCAATAAGTCAGTTGGATTCATATGATGGATGTTGACTGAGAACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCAATAAGTCAGTTGGATTCATATGATGGATGTTGACTGAGAACC  695

seq1  CAAAGTGTGTATCCTAGGACCACACCCATACAGAGTCCTAGGGAGATTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTGTATCCTAGGACCACACCCATACAGAGTCCTAGGGAGATTAT  745

seq1  CTTGTTTTATTTCATTTTGCAGCTAAGGATCTAAAGTTAAATAGGCATAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTATTTCATTTTGCAGCTAAGGATCTAAAGTTAAATAGGCATAT  795

seq1  TAAGAAACTTGACCAAGGTCACACCGCTAATAGAAGTGGGCAGGGTAGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACTTGACCAAGGTCACACCGCTAATAGAAGTGGGCAGGGTAGGG  845

seq1  AAGGAAGGGCCCCAACTCAGAACTCCCACCATGCATTGCTACTTTCATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGCCCCAACTCAGAACTCCCACCATGCATTGCTACTTTCATAT  895

seq1  GAATATGAGTCTCTCCAGCCAATGTCACCTTGAGTATATGGTCTTGGAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAGTCTCTCCAGCCAATGTCACCTTGAGTATATGGTCTTGGAAA  945

seq1  AAGAAAGTAAAGTGCAACTCAGTCCAGTTACCTGTGCATGGAAATACATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTAAAGTGCAACTCAGTCCAGTTACCTGTGCATGGAAATACATG  995

seq1  GAAATTTTCCCTAGTTGATATTTGTGTGTCAATAATGGAACTGGTTGGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTCCCTAGTTGATATTTGTGTGTCAATAATGGAACTGGTTGGGT  1045

seq1  TTCTCATTCTAAACATGCA  1066
      |||||||||||||||||||
seq2  TTCTCATTCTAAACATGCA  1064