BAC Information

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BAC

Clone NameB6Ng01-011J13
Chromosome13 (Build37)
Map Location 64,901,216 - 65,022,073
singlet/doubletdoublet
Overlap geneCntnap3, EG432767, 4930458L03Rik
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
Downstream geneLOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011J13.bB6Ng01-011J13.g
ACCDH846935DH846936
length1,132500
definitionDH846935|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J13, 5' end.DH846936|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,901,216 - 64,902,156)(65,021,568 - 65,022,073)
sequence
gaattcagtaagaatgttgcctattcagtaacatttagaattgcctttag
tattttaagagagatagtgaaagaaatcaggcattattatctactacata
gagttagaaatctctgggcaagcttagcaaagtaagtttagaattcttat
tatagttatgtatggaagactacttattagtagaaagtccccccacacta
tcagttagaataaaagccaagtcgctcccatatacaggaatttacaatgg
tttaggaagtagatcgatcgggctgtggttttagagtaatgcattattca
tgagatggttagctagagcagaactccctaattagaaccatgacttgggt
gtgaaagcccttgccctgggagtgtaaatatctcacacctggcttctaag
actatagctgaccttagatagagctgactttgtctcagttgttttattgc
ccagttcctgccagtctttacatttgttttcctctgttttgtttaagagt
cattaagcatccggtaacattattgtaccttgctgatgtgtcacctaact
tccctattttcttctgtataaaaaatttgatgctcaatttgacattacat
tcagatccacactcccttgtgtccagtctgtttgtcaccccattctcgcc
aactctatgctcatctgtccgagaccctgattcccacggattgagggggg
ccaactgggcccggtccgtggcaactattgcctaatattcttttggttta
agatactctaaatatcagcaccatcaaaacatttataagcattttaatga
tggtgttttatgaccactatcgggcttgctcttctgaagttttcatttca
tacattcctccacaactatctccaagcagtaagctgttctcataaaacta
catcattatgaatgaagcaccacagtatcaatgcctaagatttttaccat
aatcttagagagtggcaatagagagctagaggactaaaacatatctagcc
ctacttccttagttaagtgaggtgatctaagagaaaatgtagataatatt
cgaagtcgatttgattagatactcagtcttttttttaatcagcattgact
tcaagttatcatctggatccacttgcaaatac
aagtggagacagaattaagtgtggagattggaggtccagataggacagag
gatgtgtatggggaagcattggtgacattttatcctgcagttgaattgga
taaacacttgagatgacattgaataagaaaaagggagaagggagagttga
cgttgtctgagggatccaggcggcagctaccagagactcactgtggagag
aagggagaccccagaaaagctggtcacatttctgttgaaaatggtcttct
gagatcttgggataagatagtttctgagtggccacctgctcttctgattt
ttctttcaggttccaaaagggtgacagggtagtgctgtcttgtttagcac
ttgatgagttaaatatattccctaaagagttcaaatggtgtcctgggctc
atttcttctagaaataatttatccttttctttttctttcagctttttcag
gcattctccccaagctggaaattaggagagtgggttatgatggtggaagg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64901216_64902156
seq2: B6Ng01-011J13.b_272_1176

seq1  CCATATACAGGAATTTACAATGGTTTAGGAAGTAGATCGATCGGGCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATACAGGAATTTACAATGGTTTAGGAAGTAGATCGATCGGGCTGTG  50

seq1  GTTTTAGAGTAATGCATTATTCATGAGATGGTTAGCTAGAGCAGAACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAGTAATGCATTATTCATGAGATGGTTAGCTAGAGCAGAACTCC  100

seq1  CTAATTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTGGGAGTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTGGGAGTGTAA  150

seq1  ATATCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGAGCTGA  200

seq1  CTTTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCCAGTCTTTACATTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCCAGTCTTTACATTTGT  250

seq1  TTTCCTCTGTTTTGTTTAAGAGTCATTAAGCATCCGGTAACATTATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGTTTTGTTTAAGAGTCATTAAGCATCCGGTAACATTATTGTA  300

seq1  CCTTGCTGATGTGTCACCTAACTTCCCTATTTTCTTCTGTATAAAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGATGTGTCACCTAACTTCCCTATTTTCTTCTGTATAAAAAATT  350

seq1  TGATGCTCAATTTGACATTACATTCAGATCCACACTCCCTTGTGTCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCAATTTGACATTACATTCAGATCCACACTCCCTTGTGTCCAGT  400

seq1  CTGTTTGTCACCCCATTCTCGCCAACTCTATGCTCATCTGTCCGAGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTCACCCCATTCTCGCCAACTCTATGCTCATCTGTCCGAGACCC  450

seq1  TGATTCCCACGGATTGAGGGGGGCCAACTGGGCCCGGTCCGTGGCAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCACGGATTGAGGGGGGCCAACTGGGCCCGGTCCGTGGCAACTA  500

seq1  TTGCCTAATATTCTTTTGGTTTAAGATACTCTAAATATCAGCACCATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAATATTCTTTTGGTTTAAGATACTCTAAATATCAGCACCATCAA  550

seq1  AACATTTATAAGCATTTTAATGATGGTGTTTTATGACCACTATCGGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTATAAGCATTTTAATGATGGTGTTTTATGACCACTATCGGGCTT  600

seq1  GCTCTTCTGAAGTTTTCATTTCATACATTCCTCCACAACTATCTCCAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTGAAGTTTTCATTTCATACATTCCTCCACAACTATCTCCAAGC  650

seq1  AGTAAAGCTGTTCTCATAAAACTACATCATTATGAAATGAAGCACCACAG  700
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGT-AAGCTGTTCTCATAAAACTACATCATTATG-AATGAAGCACCACAG  698

seq1  TAATCAATGCCTAAGGATTTTTACCATAAATCTTAGAGAGTGGCAATAGA  750
      | |||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  T-ATCAATGCCTAA-GATTTTTACCAT-AATCTTAGAGAGTGGCAATAGA  745

seq1  GAGCTAGAAGGGACCTAAAACATTATTCTAGCCCTACTTCCTTAAGTTAA  800
      ||||||||  ||| |||||||||   ||||||||||||||||| ||||||
seq2  GAGCTAGA--GGA-CTAAAACAT--ATCTAGCCCTACTTCCTT-AGTTAA  789

seq1  AGGTGAGGTGATACTAAGAGAGAAAAAATGTAGATAAATATCAGATAGGT  850
        |||||||||| |||||||    ||||||||||| |||||  |  | ||
seq2  --GTGAGGTGAT-CTAAGAG----AAAATGTAGAT-AATATTCG--AAGT  829

seq1  CAGATATGATTAGATTACATCAGGGCCCTTTTTTTTTTATAATCACAGCA  900
      | ||| |||||||| ||| ||||       | |||||| ||||  |||||
seq2  C-GATTTGATTAGA-TAC-TCAG-------TCTTTTTTTTAAT--CAGCA  867

seq1  TTGACTCCATGTTATCATCCTGAGTCCACTTGCACAAATAC  941
      |||||| || |||||||| |||  ||||||||  |||||||
seq2  TTGACTTCAAGTTATCAT-CTGGATCCACTTG--CAAATAC  905

seq1: chr13_65021568_65022073
seq2: B6Ng01-011J13.g_67_572 (reverse)

seq1  CCTTCCACCATCATAACCCACTCTCCTAATTTCCAGCTTGGGGAGAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACCATCATAACCCACTCTCCTAATTTCCAGCTTGGGGAGAATGC  50

seq1  CTGAAAAAGCTGAAAGAAAAAGAAAAGGATAAATTATTTCTAGAAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAAGCTGAAAGAAAAAGAAAAGGATAAATTATTTCTAGAAGAAAT  100

seq1  GAGCCCAGGACACCATTTGAACTCTTTAGGGAATATATTTAACTCATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGGACACCATTTGAACTCTTTAGGGAATATATTTAACTCATCAA  150

seq1  GTGCTAAACAAGACAGCACTACCCTGTCACCCTTTTGGAACCTGAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAACAAGACAGCACTACCCTGTCACCCTTTTGGAACCTGAAAGAA  200

seq1  AAATCAGAAGAGCAGGTGGCCACTCAGAAACTATCTTATCCCAAGATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAGAGCAGGTGGCCACTCAGAAACTATCTTATCCCAAGATCTC  250

seq1  AGAAGACCATTTTCAACAGAAATGTGACCAGCTTTTCTGGGGTCTCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCATTTTCAACAGAAATGTGACCAGCTTTTCTGGGGTCTCCCTT  300

seq1  CTCTCCACAGTGAGTCTCTGGTAGCTGCCGCCTGGATCCCTCAGACAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACAGTGAGTCTCTGGTAGCTGCCGCCTGGATCCCTCAGACAACG  350

seq1  TCAACTCTCCCTTCTCCCTTTTTCTTATTCAATGTCATCTCAAGTGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTCCCTTCTCCCTTTTTCTTATTCAATGTCATCTCAAGTGTTTA  400

seq1  TCCAATTCAACTGCAGGATAAAATGTCACCAATGCTTCCCCATACACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCAACTGCAGGATAAAATGTCACCAATGCTTCCCCATACACATC  450

seq1  CTCTGTCCTATCTGGACCTCCAATCTCCACACTTAATTCTGTCTCCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCTATCTGGACCTCCAATCTCCACACTTAATTCTGTCTCCACTT  500

seq1  GAATTC  506
      ||||||
seq2  GAATTC  506