BAC Information

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BAC

Clone NameB6Ng01-012E21
Chromosome8 (Build37)13 (Build37)
Map Location 64,859,696 - 64,860,8964,901,004 - 4,901,074
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775
Downstream geneLOC384830, LOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012E21.bB6Ng01-012E21.g
ACCDH847436DH847437
length1,188211
definitionDH847436|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E21, 5' end.DH847437|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,859,696 - 64,860,896)(4,901,004 - 4,901,074)
sequence
gaattcaacatttattgctcaaaactaccaaagtaccaggaggcaggaac
cgatggaaagaaatagatttattttgttttgaccagactacagagatcat
ttcagcctccctccctccaccttgaccatacattataaaaatttacagga
aaaaataacagaaacagaaaatatacacgaatagatttcattgtaaggcc
atgttatctgaactagtaactatgtcctgtctgctggaagacaaactgct
ctgctgttagggcttctgtgaatattctctcctcaaacttagcactgagt
ttcctggaaaagatgattattatcattattgttgttgttgtcaatattca
ttgtgcatattcatttcaaaatgcaatgggtttgatggtgaagcttaatt
gatgcatatggtgcatttttactgtattcatactccctccccatctcctg
atcagtgcctttcctggtaattcccattcttcttttcaaatagacctttt
tcattttcgtttccattgtgtgtgtgtctgtgtgcgtgtgtgtgtgtgca
tgtgtgtgtaaaatctaggctttacctatgaaagcaaactgatacttgtt
ttgcttctagattatttagtttagtccagtatttttggctcccattacgt
gttttaggctctgtgattcggtgctttgtatcctcttggtcatgcagaaa
atcccactgagtaagaccgtcttgacaaaatagaactaagagcagtggtg
tgagattgggtttactcctgatgtgcaagtccttagttactttgaggggc
acatcagagtcttgaggatggcagattgagttcttgagcaaacagcactc
atactaaggagaggtatagaaagcagcccaagtgttcctgggcagagaga
gctgacttagctgaaattagctgaaatggaatatcagtgaaacaaatggc
aaatcccaattatcttgtccataattacgcaaaggaacaacagaaaaaca
ggttgcgtttcagcccctgaaatttttgaattgaaatttggatatgaata
tggactatgtaccttcctctgtggaaatacatgggagcatctagggaaat
aacatggaacttttaggaaataacatggggaacttatacggttattagct
actttttatagatcgatcacccatgctgccaactctag
actcctagtcactgcccattctcggggcgtaatagtggggtgatgggcga
gcaacgaatcaggagctgtcacgccatatcaggtgctgaaacgtcacact
gcgggctatataagtagcgccatttttccggttcggggtcttcctgaaga
agtaagcaataaagcttttgccacagaagattccggtttgttgagtcttt
cttgccggtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_64859696_64860896
seq2: B6Ng01-012E21.b_43_1230 (reverse)

seq1  CTAGAGTTTTGGCAGCAAATGGTGTTGATCTGATCTAATAATAAGTAGCT  50
      ||||||  ||||||||  |||  | ||||| ||||| |||| ||||||||
seq2  CTAGAG--TTGGCAGC--ATG--GGTGATC-GATCT-ATAAAAAGTAGCT  42

seq1  AATAACACGGTATTAGATGTTCCCATGTTATTTTCCTAGATGTTCCCATG  100
      ||||  || |||| ||   | ||||||||| ||||||| | ||| |||||
seq2  AATA--ACCGTATAAG--TTCCCCATGTTA-TTTCCTAAAAGTT-CCATG  86

seq1  TTATTTTCCTAGATGCTCCCATGTTATTTTCACAGAGGAAGGTACATAGT  150
      |||||| |||||||||||||||| ||||| ||||||||||||||||||||
seq2  TTATTTCCCTAGATGCTCCCATG-TATTTCCACAGAGGAAGGTACATAGT  135

seq1  CAATATTCATAT-CAAATTTCAATTC-AAAATATCAGGGGGCTGAAACGC  198
      | |||||||||| ||||||||||||| ||||| ||| |||||||||||||
seq2  CCATATTCATATCCAAATTTCAATTCAAAAATTTCA-GGGGCTGAAACGC  184

seq1  AA-CTGTTTTTCTGTTGTCCCTTTGCGTAATTATGGAC-AGATAATTGGG  246
      || ||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  AACCTGTTTTTCTGTTGTTCCTTTGCGTAATTATGGACAAGATAATTGGG  234

seq1  ATTTGCCATTTGTTTCACTGATATTCCCATTTCAGCTAATTTCAGCTAAG  296
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTTGCCATTTGTTTCACTGATATT-CCATTTCAGCTAATTTCAGCTAAG  283

seq1  TCAGCTCTCTCTGCCCAGGAACACTTGGGCTGCTTTCTATACCTCTCCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTCTCTGCCCAGGAACACTTGGGCTGCTTTCTATACCTCTCCTT  333

seq1  AGTATGAGTGCTGTTTGCTCAAGAACTCAATCTGCCATCCTCAAGACTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGTGCTGTTTGCTCAAGAACTCAATCTGCCATCCTCAAGACTCT  383

seq1  GATGTGCCCCTCAAAGTAACTAAGGACTTGCACATCAGGAGTAAACCCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCCCCTCAAAGTAACTAAGGACTTGCACATCAGGAGTAAACCCAA  433

seq1  TCTCACACCACTGCTCTTAGTTCTATTTTGTCAAGACGGTCTTACTCAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACCACTGCTCTTAGTTCTATTTTGTCAAGACGGTCTTACTCAGT  483

seq1  GGGATTTTCTGCATGACCAAGAGGATACAAAGCACCGAATCACAGAGCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTCTGCATGACCAAGAGGATACAAAGCACCGAATCACAGAGCCT  533

seq1  AAAACACGTAATGGGAGCCAAAAATACTGGACTAAACTAAATAATCTAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACGTAATGGGAGCCAAAAATACTGGACTAAACTAAATAATCTAGA  583

seq1  AGCAAAACAAGTATCAGTTTGCTTTCATAGGTAAAGCCTAGATTTTACAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACAAGTATCAGTTTGCTTTCATAGGTAAAGCCTAGATTTTACAC  633

seq1  ACACATGCACACACACACACGCACACAGACACACACACAATGGAAACGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCACACACACACACGCACACAGACACACACACAATGGAAACGAA  683

seq1  AATGAAAAAGGTCTATTTGAAAAGAAGAATGGGAATTACCAGGAAAGGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAAGGTCTATTTGAAAAGAAGAATGGGAATTACCAGGAAAGGCA  733

seq1  CTGATCAGGAGATGGGGAGGGAGTATGAATACAGTAAAAATGCACCATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAGGAGATGGGGAGGGAGTATGAATACAGTAAAAATGCACCATAT  783

seq1  GCATCAATTAAGCTTCACCATCAAACCCATTGCATTTTGAAATGAATATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAATTAAGCTTCACCATCAAACCCATTGCATTTTGAAATGAATATG  833

seq1  CACAATGAATATTGACAACAACAACAATAATGATAATAATCATCTTTTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGAATATTGACAACAACAACAATAATGATAATAATCATCTTTTCC  883

seq1  AGGAAACTCAGTGCTAAGTTTGAGGAGAGAATATTCACAGAAGCCCTAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTCAGTGCTAAGTTTGAGGAGAGAATATTCACAGAAGCCCTAAC  933

seq1  AGCAGAGCAGTTTGTCTTCCAGCAGACAGGACATAGTTACTAGTTCAGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCAGTTTGTCTTCCAGCAGACAGGACATAGTTACTAGTTCAGAT  983

seq1  AACATGGCCTTACAATGAAATCTATTCGTGTATATTTTCTGTTTCTGTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCCTTACAATGAAATCTATTCGTGTATATTTTCTGTTTCTGTTA  1033

seq1  TTTTTTCCTGTAAATTTTTATAATGTATGGTCAAGGTGGAGGGAGGGAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTGTAAATTTTTATAATGTATGGTCAAGGTGGAGGGAGGGAGG  1083

seq1  CTGAAATGATCTCTGTAGTCTGGTCAAAACAAAATAAATCTATTTCTTTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGATCTCTGTAGTCTGGTCAAAACAAAATAAATCTATTTCTTTC  1133

seq1  CATCGGTTCCTGCCTCCTGGTACTTTGGTAGTTTTGAGCAATAAATGTTG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGTTCCTGCCTCCTGGTACTTTGGTAGTTTTGAGCAATAAATGTTG  1183

seq1  AATTC  1201
      |||||
seq2  AATTC  1188

seq1: chr13_4901004_4901074
seq2: B6Ng01-012E21.g_213_282 (reverse)

seq1  CGACCGGCCAGGAAAGACGCAACAAACCGGAATCTTCTGCGGCAAAAGCT  50
      ||||||| || ||||||| |||||||||||||||||||| ||||||||||
seq2  CGACCGG-CAAGAAAGACTCAACAAACCGGAATCTTCTGTGGCAAAAGCT  49

seq1  TTATTGCTTACATCTTCAGGA  71
      ||||||||||| |||||||||
seq2  TTATTGCTTACTTCTTCAGGA  70