BAC Information

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BAC

Clone NameB6Ng01-012G03
Chromosome13 (Build37)
Map Location 55,481,421 - 55,613,069
singlet/doubletdoublet
Overlap geneRgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7
Upstream geneCplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2
Downstream geneDok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012G03.bB6Ng01-012G03.g
ACCDH847493DH847494
length634932
definitionDH847493|Mus musculus domesticus DNA, BAC clone: B6Ng01-012G03, 5' end.DH847494|Mus musculus domesticus DNA, BAC clone: B6Ng01-012G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,481,421 - 55,482,054)(55,612,141 - 55,613,069)
sequence
gaattcttctgccagtctggacctgggtttccttgcctttgtgagcagca
aatctgaggtgagccggcctttgagagacgctgtcttcatgggttccagc
attcacagtggacagctacacttccactcatagcttgctccacaaagcca
tcccctgatacacacacacacacacacccctttctctccgtgccagatag
agtggtctctgtacataccatggatgcacatgctcatctgggagaagtat
gtgtgcgcgtgtatgtgtgtgtgactgtgtatgtttgtgcgtgtgtgtgg
gggtctcggggtatcctgtatgtgtgtggctagttaggggagctatcttt
gagtgtccaatgttttttgtttgtttgttgatttggttgggttttgggag
gtggcagggtgcgttgatttgtttgtttagttggttttttattttgtttt
tttgagacaggtttttttttattggatattttctttatttacatttcaaa
tgttatcccctttcccagtacctctatcccctggaaccccctatcccacc
cctggttttttagttttttgagctagggtttctctgtgtagccctgtctg
ttttggaactcactctgtagtccaggcatgcttt
gaattcctgttcccattcctcagtccaccctggtgaggagggtggagctg
ggaactgactcctccctgaggcagggggattaccttataagcccaagaat
gcgggccccagttgggatggccagcagtggctagtcaacagagcccaaga
gggctggcctaagtctaggccccttacctggccctcagtcattggtgtca
gtaggactcaaagcaaactttgtgcccagccttccagcttggtatctctg
actggcctagggggtcaaaaagggggcagggacttccttccctgatatcc
gcctgcctagagaggcccacccagccactgtgtaggcaggcagctgctgg
caggaagcccagggcaagcccagcccaaaggggcctgagaatttccaggc
actgcccagcctgagtagggtatcaaggctggttctctctgtgggagcca
gacatggtggacagggcaggcaggcatgcatgctgtgttcttcccagaat
ccttctctggaattgctttggaatctgctccaaccagcaggatgactaag
ggctatctagacccttcccccacgcgtacatcctacgggtttcttcctcc
cctctgggaaagtgctggccagtgtagtgtaggtcttaagttttcttcat
tggtaaggaaggccctgcagatgttgccttttgggggcactctgctggcc
cctgctggcccctggcctcctttgtcagcagctttaacctgtgggtgggg
ccacccgctgagtcctgccctggagtgagttaggccctgatgggtggggt
ggtcttttctaaattgggccagcccgctatctctcccctgaccccagagt
gggagggaggaaaggaggggctaggtctggctgtgggcccaggcctggaa
gatgaggtaatggtctgggatttggcggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55481421_55482054
seq2: B6Ng01-012G03.b_46_679

seq1  GAATTCTTCTGCCAGTCTGGACCTGGGTTTCCTTGCCTTTGTGAGCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCCAGTCTGGACCTGGGTTTCCTTGCCTTTGTGAGCAGCA  50

seq1  AATCTGAGGTGAGCCGGCCTTTGAGAGACGCTGTCTTCATGGGTTCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAGGTGAGCCGGCCTTTGAGAGACGCTGTCTTCATGGGTTCCAGC  100

seq1  ATTCACAGTGGACAGCTACACTTCCACTCATAGCTTGCTCCACAAAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGTGGACAGCTACACTTCCACTCATAGCTTGCTCCACAAAGCCA  150

seq1  TCCCCTGATACACACACACACACACACCCCTTTCTCTCCGTGCCAGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGATACACACACACACACACACCCCTTTCTCTCCGTGCCAGATAG  200

seq1  AGTGGTCTCTGTACATACCATGGATGCACATGCTCATCTGGGAGAAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTCTGTACATACCATGGATGCACATGCTCATCTGGGAGAAGTAT  250

seq1  GTGTGCGCGTGTATGTGTGTGTGACTGTGTATGTTTGTGCGTGTGTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGCGTGTATGTGTGTGTGACTGTGTATGTTTGTGCGTGTGTGTGG  300

seq1  GGGTCTCGGGGTATCCTGTATGTGTGTGGCTAGTTAGGGGAGCTATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCGGGGTATCCTGTATGTGTGTGGCTAGTTAGGGGAGCTATCTTT  350

seq1  GAGTGTCCAATGTTTTTTGTTTGTTTGTTGATTTGGTTGGGTTTTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCCAATGTTTTTTGTTTGTTTGTTGATTTGGTTGGGTTTTGGGAG  400

seq1  GTGGCAGGGTGCGTTGATTTGTTTGTTTAGTTGGTTTTTTATTTTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGGTGCGTTGATTTGTTTGTTTAGTTGGTTTTTTATTTTGTTTT  450

seq1  TTTGAGACAGGTTTTTTTTTATTGGATATTTTCTTTATTTACATTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGGTTTTTTTTTATTGGATATTTTCTTTATTTACATTTCAAA  500

seq1  TGTTATCCCCTTTCCCAGTACCTCTATCCCCAGGGAACCCCCTATCCCAC  550
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TGTTATCCCCTTTCCCAGTACCTCTATCCCC-TGGAACCCCCTATCCCAC  549

seq1  CCCTGG-TTTTTAGTTTTTTGAGCTAGGGTTTCTCTGTGTAGCCCTGTCT  599
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTTTTTAGTTTTTTGAGCTAGGGTTTCTCTGTGTAGCCCTGTCT  599

seq1  GTTTTGGAACTCACTCTGTAGTCCAGGCATGCTTT  634
      |||||||||||||||||||||||||||||||||||
seq2  GTTTTGGAACTCACTCTGTAGTCCAGGCATGCTTT  634

seq1: chr13_55612141_55613069
seq2: B6Ng01-012G03.g_67_998 (reverse)

seq1  CCAACCCCCAAATCCCAGA-CATTACCTCATCTTCCAGGCCTGGGCCCAC  49
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  CCAACCGCCAAATCCCAGACCATTACCTCATCTTCCAGGCCTGGGCCCAC  50

seq1  AGCCAGCCCTAGCCCCTCC-TTCCTCCCT-CCACTCTGGGGTCAGGGGAG  97
      |||||| |||||||||||| ||||||||| ||||||||||||||||||||
seq2  AGCCAGACCTAGCCCCTCCTTTCCTCCCTCCCACTCTGGGGTCAGGGGAG  100

seq1  GGATAGCGGGCTGGCCCAATTTAGAAAAGACCACCCCACCCATCAGGGCC  147
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCGGGCTGGCCCAATTTAGAAAAGACCACCCCACCCATCAGGGCC  150

seq1  TAACTCACTCCAGGGCAGGACTCAGCGGGTGGCCCCACCCACAGGTTAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCACTCCAGGGCAGGACTCAGCGGGTGGCCCCACCCACAGGTTAAA  200

seq1  GCTGCTGACAAAGGAGGCCAGGGGCCAGCAGGGGCCAGCAGAGTGCCCCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGACAAAGGAGGCCAGGGGCCAGCAGGGGCCAGCAGAGTGCCCCC  250

seq1  AAAAGGCAACATCTGCAGGGCCTTCCTTACCAATGAAGAAAACTTAAGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAACATCTGCAGGGCCTTCCTTACCAATGAAGAAAACTTAAGAC  300

seq1  CTACACTACACTGGCCAGCACTTTCCCAGAGGGGAGGAAGAAACCCGTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTACACTGGCCAGCACTTTCCCAGAGGGGAGGAAGAAACCCGTAG  350

seq1  GATGTACGCGTGGGGGAAGGGTCTAGATAGCCCTTAGTCATCCTGCTGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACGCGTGGGGGAAGGGTCTAGATAGCCCTTAGTCATCCTGCTGGT  400

seq1  TGGAGCAGATTCCAAAGCAATTCCAGAGAAGGATTCTGGGAAGAACACAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGATTCCAAAGCAATTCCAGAGAAGGATTCTGGGAAGAACACAG  450

seq1  CATGCATGCCTGCCTGCCCTGTCCACCATGTCTGGCTCCCACAGAGAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCCTGCCTGCCCTGTCCACCATGTCTGGCTCCCACAGAGAGAA  500

seq1  CCAGCCTTGATACCCTACTCAGGCTGGGCAGTGCCTGGAAATTCTCAGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTGATACCCTACTCAGGCTGGGCAGTGCCTGGAAATTCTCAGGC  550

seq1  CCCTTTGGGCTGGGCTTGCCCTGGGCTTCCTGCCAGCAGCTGCCTGCCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGGCTGGGCTTGCCCTGGGCTTCCTGCCAGCAGCTGCCTGCCTA  600

seq1  CACAGTGGCTGGGTGGGCCTCTCTAGGCAGGCGGATATCAGGGAAGGAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGCTGGGTGGGCCTCTCTAGGCAGGCGGATATCAGGGAAGGAAG  650

seq1  TCCCTGCCCCCTTTTTGACCCCCTAGGCCAGTCAGAGATACCAAGCTGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCCCCTTTTTGACCCCCTAGGCCAGTCAGAGATACCAAGCTGGA  700

seq1  AGGCTGGGCACAAAGTTTGCTTTGAGTCCTACTGACACCAATGACTGAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGCACAAAGTTTGCTTTGAGTCCTACTGACACCAATGACTGAGG  750

seq1  GCCAGGTAAGGGGCCTAGACTTAGGCCAGCCCTCTTGGGCTCTGTTGACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTAAGGGGCCTAGACTTAGGCCAGCCCTCTTGGGCTCTGTTGACT  800

seq1  AGCCACTGCTGGCCATCCCAACTGGGGCCCGCATTCTTGGGCTTATAAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGCTGGCCATCCCAACTGGGGCCCGCATTCTTGGGCTTATAAGG  850

seq1  TAATCCCCCTGCCTCAGGGAGGAGTCAGTTCCCAGCTCCACCCTCCTCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCCCTGCCTCAGGGAGGAGTCAGTTCCCAGCTCCACCCTCCTCAC  900

seq1  CAGGGTGGACTGAGGAATGGGAACAGGAATTC  929
      ||||||||||||||||||||||||||||||||
seq2  CAGGGTGGACTGAGGAATGGGAACAGGAATTC  932