BAC Information

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BAC

Clone NameB6Ng01-012J14
Chromosome13 (Build37)
Map Location 5,824,338 - 6,058,590
singlet/doubletdoublet
Overlap gene1700016G22Rik, Klf6
Upstream geneEG432723
Downstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012J14.bB6Ng01-012J14.g
ACCDH847649DH847650
length1,1661,031
definitionDH847649|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J14, 5' end.DH847650|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,824,338 - 5,825,522)(6,057,567 - 6,058,590)
sequence
gaattctttaaagaaagtcgaagtaatgttctctaatagtcagctaaagc
caaggttacctttaaaatgtttgttttgttttgttttgttttgttttctt
aatctcctcttactacacagtagaacagcagtggccagttaaaaagcatc
ctgaaatttatattttcagggtcctggtgggcagaaggtgttggcatgga
gcctagggctttactctgattttaacaggtttcgagacaccagagcctcc
agagaagtactttgtggaggcaaagcaggccaggtccacagctaatcaac
cttggattctgccctttgaaaaactttgaaagtgaatctattatacatgg
ctaggactccctagcagagattagttggactgtgaaatataaatatttca
ttggtactcttttggaactgtgctaatgtagtagagaaattgccaattct
taaacaaatcttccaaaactatagatatggaaatagtcacttcattccac
cagacagatagaattccaacctaatcttccatgttttcctcatccactat
aagactaaggagggacctacagggggaacgtcctagagatgtagttcacc
atcaatttacttatgacttgaaccaaagccactgtgctcagcactgcctg
tgggcatcaaattattcaagtaatgggagcagctaagcccacaaagatac
cttagtcctgtgcctgttacagcttcctgtgggtatttccagctttggct
aagtcacttaaagtgttcactgtatgaataatatatttttgatttgtcct
gctgccaaaaatatagatatccatgttaaggtaactttctacatgacata
cataatcataaccaatcataaccaacaccaggctaacattaagcatcctt
gaactccttaataataggcaagctctgggtaaatgtgcatagtttgggta
tcattggtgtgccacgatttctctatcatggatttacccctctgttcctc
attcctttctgaattaaagagtttcctcatttcaattcagagctgtgtct
cctgcacttccatatgaacatctacttggcattttaacgctgttggggaa
atggagttatctatgcagcctcgggtaaggtctgctgagtcaacgttcag
tctaattcaaggtttt

gaattccacagctgcactaacatgcatgtcctagacgtaaacaaatagag
agagaattaattttaaatttccttaaaatttccggtgcctggtgaattct
aaataaatccaaaccatcccatattagaaaggaagttttttgtgttattt
tttgttggtatgagttacattgttttctttgttataattcactcaaaatg
tgattaaaaaatgagtaggcggtagctattacaactaacaatataacctg
gcatcggatttgataagagagagaaagagagatgggacctactatgtaat
ttcatttacagtaagtggtccaaaacatcctcactcacaaaaacacatag
agcataaaatggttaagtaccagaaacccaggaggctacagccccctccc
cacaggggacacataataatgtaacatacaaataactcttgtccagcagg
gaaacatttcccagcaacactccacctggaaagatgtcctcttccctccc
aaaggctacattaaaaatcctttccttgaaattctcaactaactacagtg
agaatagaaggcattttgaggctcacataccttttctacactcaaacatt
ttattggataattgggggaagaagtttaacatactggaagaacactcatg
tatttatttgtaggttaattgtccacaagatcctaggcagaaagatgggt
caatagagcctacaaggccaggaaataaaagaacagtatgatggcaaagt
ctcagtaaaacttttcaacatgggtcatgactctcatacttctatgacaa
ctggagcttgaggattgcctggtcaatctttataaaaactagctacacac
tatggagggaaaaggtgttttcaactctacctagccggagacattgccaa
ccctctacttatcacctatgattaattcaaaactactccaatcaggacac
agaatcccttaggatctttttgagggtgcctctagaagaaaagctgagtg
tgaataactattaatgaatgtagaatgtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5824338_5825522
seq2: B6Ng01-012J14.b_44_1209

seq1  GAATTCTTTAAAGAAAGTCGAAGTAATGTTCTCTAATAGTCAGCTAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAGAAAGTCGAAGTAATGTTCTCTAATAGTCAGCTAAAGC  50

seq1  CAAGGTTACCTTTAAAATGTTTGTTTTGTTTTGTTTTGTTTTGTTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTACCTTTAAAATGTTTGTTTTGTTTTGTTTTGTTTTGTTTTCTT  100

seq1  AATCTCCTCTTACTACACAGTAGAACAGCAGTGGCCAGTTAAAAAGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTCTTACTACACAGTAGAACAGCAGTGGCCAGTTAAAAAGCATC  150

seq1  CTGAAATTTATATTTTCAGGGTCCTGGTGGGCAGAAGGTGTTGGCATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTTATATTTTCAGGGTCCTGGTGGGCAGAAGGTGTTGGCATGGA  200

seq1  GCCTAGGGCTTTACTCTGATTTTAACAGGTTTCGAGACACCAGAGCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGGCTTTACTCTGATTTTAACAGGTTTCGAGACACCAGAGCCTCC  250

seq1  AGAGAAGTACTTTGTGGAGGCAAAGCAGGCCAGGTCCACAGCTAATCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTACTTTGTGGAGGCAAAGCAGGCCAGGTCCACAGCTAATCAAC  300

seq1  CTTGGATTCTGCCCTTTGAAAAACTTTGAAAGTGAATCTATTATACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTCTGCCCTTTGAAAAACTTTGAAAGTGAATCTATTATACATGG  350

seq1  CTAGGACTCCCTAGCAGAGATTAGTTGGACTGTGAAATATAAATATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTCCCTAGCAGAGATTAGTTGGACTGTGAAATATAAATATTTCA  400

seq1  TTGGTACTCTTTTGGAACTGTGCTAATGTAGTAGAGAAATTGCCAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACTCTTTTGGAACTGTGCTAATGTAGTAGAGAAATTGCCAATTCT  450

seq1  TAAACAAATCTTCCAAAACTATAGATATGGAAATAGTCACTTCATTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAATCTTCCAAAACTATAGATATGGAAATAGTCACTTCATTCCAC  500

seq1  CAGACAGATAGAATTCCAACCTAATCTTCCATGTTTTCCTCATCCACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATAGAATTCCAACCTAATCTTCCATGTTTTCCTCATCCACTAT  550

seq1  AAGACTAAGGAGGGACCTACAGGGGGAACGTCCTAGAGATGTAGTTCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAAGGAGGGACCTACAGGGGGAACGTCCTAGAGATGTAGTTCACC  600

seq1  ATCAATTTACTTATGACTTGAACCAAAGCCACTGTGCTCAGCACTGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTACTTATGACTTGAACCAAAGCCACTGTGCTCAGCACTGCCTG  650

seq1  TGGGCATCAAATTATTCAAGTAATGGGAGCAGCTAAGCCCACAAAGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCAAATTATTCAAGTAATGGGAGCAGCTAAGCCCACAAAGATAC  700

seq1  CTTAGTCCTGTGCCTGTTACAGCTTCCTGTGGGTATTTCCAGCTTTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCCTGTGCCTGTTACAGCTTCCTGTGGGTATTTCCAGCTTTGGCT  750

seq1  AAGTCACTTAAAGTGTTCACTGTATGAATAATATATTTTTGATTTGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTTAAAGTGTTCACTGTATGAATAATATATTTTTGATTTGTCCT  800

seq1  GCTGCCAAAAATATAGATATCCATGTTAAGGTAACTTTCTACATGACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAAAAATATAGATATCCATGTTAAGGTAACTTTCTACATGACATA  850

seq1  CATAATCATAACCAATCATAACCAACACCAGGCTAACATTAAGCATCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCATAACCAATCATAACCAACACCAGGCTAACATTAAGCATCCTT  900

seq1  GAACTCCTTAATAATAGGCAAGGCTCTGGGTAAATGTGCATAGTTTGGGT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAACTCCTTAATAATAGGCAA-GCTCTGGGTAAATGTGCATAGTTTGGGT  949

seq1  ATCATTGGTGTGCCACGATTTCTCTATCATTGGATTTACCCTTCTGTTCC  1000
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  ATCATTGGTGTGCCACGATTTCTCTATCA-TGGATTTACCCCTCTGTTCC  998

seq1  TCATTCCTTTCTGAATTTAAAGAGTTTCCTCATTCCATTCCAGAGGCTGT  1050
      ||||||||||||||| |||||||||||||||||| || | |||| |||| 
seq2  TCATTCCTTTCTGAA-TTAAAGAGTTTCCTCATTTCAATTCAGA-GCTG-  1045

seq1  TGTCTCCTGCACTTTCCATATG-ACATCTACTCTGCATTTTTTAACGCTT  1099
      |||||||||||| ||||||||| |||||||||  |||  |||||||||| 
seq2  TGTCTCCTGCAC-TTCCATATGAACATCTACTTGGCA--TTTTAACGCT-  1091

seq1  GTTTGGGGTAAATTGAATTTTTCTAATGCAGCCTCGGGTTAAAGGTCTGC  1149
        ||||||  || || | || ||| ||||||||||||||  |||||||||
seq2  -GTTGGGG--AAATGGAGTTATCT-ATGCAGCCTCGGGT--AAGGTCTGC  1135

seq1  TGAAGTCATACATTTCAGTCTAAATTCCAAGGTTTT  1185
      || ||||| ||  ||||||||||  | |||||||||
seq2  TG-AGTCA-AC-GTTCAGTCTAA--TTCAAGGTTTT  1166


seq1: chr13_6057567_6058590
seq2: B6Ng01-012J14.g_64_1094 (reverse)

seq1  GATACA-TCTACATTCTATATATGTTATTCACACTCAGCTCTTCTATTAG  49
      |||||| |||||||||  ||   ||||||||||||||||| ||||  |||
seq2  GATACATTCTACATTCATTAATAGTTATTCACACTCAGCTTTTCTTCTAG  50

seq1  A-GCA-CCACAAAAGGATCCTAAGGGATTCTTGTTGTCTGATTGG-GTAG  96
      | ||| || ||||| ||||||||||||||| |||   |||||||| ||||
seq2  AGGCACCCTCAAAAAGATCCTAAGGGATTC-TGTGTCCTGATTGGAGTAG  99

seq1  TTTTGATTAAATCATAGGTGATAAGT-GGGGGTTGGCAATGTCTCCGGCT  145
      |||||| | ||||||||||||||||| | |||||||||||||||||||||
seq2  TTTTGAATTAATCATAGGTGATAAGTAGAGGGTTGGCAATGTCTCCGGCT  149

seq1  AGGTAGAGTTGAAAACACCTTTT-CCTCCATAGTGTGTAGCTAGTTTTTA  194
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGTAGAGTTGAAAACACCTTTTCCCTCCATAGTGTGTAGCTAGTTTTTA  199

seq1  TAAAGATTGACCAGGCAATCCTCAAAGCTCCAGTTGTCATAGAAGTATG-  243
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TAAAGATTGACCAGGCAATCCTC-AAGCTCCAGTTGTCATAGAAGTATGA  248

seq1  GAGTCATGA-CCATGTTG-AAAGTTTTACTGAGACTTTGCCATCATACTG  291
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  GAGTCATGACCCATGTTGAAAAGTTTTACTGAGACTTTGCCATCATACTG  298

seq1  TTCTTTTATTTCCTGGCCTTGTAGGCTCTATTGACCCATCTTTCTGCCTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATTTCCTGGCCTTGTAGGCTCTATTGACCCATCTTTCTGCCTA  348

seq1  GGATCTTGTGGACAATTAACCTACAAATAAATACATGAGTGTTCTTCCAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGTGGACAATTAACCTACAAATAAATACATGAGTGTTCTTCCAG  398

seq1  TATGTTAAACTTCTTCCCCCAATTATCCAATAAAATGTTTGAGTGTAGAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAAACTTCTTCCCCCAATTATCCAATAAAATGTTTGAGTGTAGAA  448

seq1  AAGGTATGTGAGCCTCAAAATGCCTTCTATTCTCACTGTAGTTAGTTGAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATGTGAGCCTCAAAATGCCTTCTATTCTCACTGTAGTTAGTTGAG  498

seq1  AATTTCAAGGAAAGGATTTTTAATGTAGCCTTTGGGAGGGAAGAGGACAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAGGAAAGGATTTTTAATGTAGCCTTTGGGAGGGAAGAGGACAT  548

seq1  CTTTCCAGGTGGAGTGTTGCTGGGAAATGTTTCCCTGCTGGACAAGAGTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGGTGGAGTGTTGCTGGGAAATGTTTCCCTGCTGGACAAGAGTT  598

seq1  ATTTGTATGTTACATTATTATGTGTCCCCTGTGGGGAGGGGGCTGTAGCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATGTTACATTATTATGTGTCCCCTGTGGGGAGGGGGCTGTAGCC  648

seq1  TCCTGGGTTTCTGGTACTTAACCATTTTATGCTCTATGTGTTTTTGTGAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTTTCTGGTACTTAACCATTTTATGCTCTATGTGTTTTTGTGAG  698

seq1  TGAGGATGTTTTGGACCACTTACTGTAAATGAAATTACATAGTAGGTCCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGTTTTGGACCACTTACTGTAAATGAAATTACATAGTAGGTCCC  748

seq1  ATCTCTCTTTCTCTCTCTTATCAAATCCGATGCCAGGTTATATTGTTAGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTTTCTCTCTCTTATCAAATCCGATGCCAGGTTATATTGTTAGT  798

seq1  TGTAATAGCTACCGCCTACTCATTTTTTAATCACATTTTGAGTGAATTAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGCTACCGCCTACTCATTTTTTAATCACATTTTGAGTGAATTAT  848

seq1  AACAAAGAAAACAATGTAACTCATACCAACAAAAAATAACACAAAAAACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAAAACAATGTAACTCATACCAACAAAAAATAACACAAAAAACT  898

seq1  TCCTTTCTAATATGGGATGGTTTGGATTTATTTAGAATTCACCAGGCACC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTAATATGGGATGGTTTGGATTTATTTAGAATTCACCAGGCACC  948

seq1  GGAAATTTTAAGGAAATTTAAAATTAATTCTCTCTCTATTTGTTTACGTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTTAAGGAAATTTAAAATTAATTCTCTCTCTATTTGTTTACGTC  998

seq1  TAGGACATGCATGTTAGTGCAGCTGTGGAATTC  1024
      |||||||||||||||||||||||||||||||||
seq2  TAGGACATGCATGTTAGTGCAGCTGTGGAATTC  1031


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