BAC Information

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BAC

Clone NameB6Ng01-012M19
Chromosome13 (Build37)
Map Location 83,445,660 - 83,592,057
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC238756, LOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012M19.bB6Ng01-012M19.g
ACCDH847785DH847786
length1,1051,096
definitionDH847785|Mus musculus domesticus DNA, BAC clone: B6Ng01-012M19, 5' end.DH847786|Mus musculus domesticus DNA, BAC clone: B6Ng01-012M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,445,660 - 83,446,767)(83,590,949 - 83,592,057)
sequence
gaattcaacctacttaacattaaaacagtctgttttgttcaagtactccc
ctaagatggcatgagagacagagaaccatagatcctgcttacaagttcca
cagtgcattttatcaggaaagctatctatccaacagttctcttcagaaaa
attttaatgatccaaggtcacacctcttaaaagaatgaggtctagtttta
cataagaaggtccaactcgcagggttttattttctttttatgctcagacc
tcacaaaccgaggcccacagtcttcaaataccgctccttgttaaaattga
actcagaaaaaggttactctacctcagaattttaaataaagcttctacaa
caaagtgcagtgttccaacgctttaaataaacctgaaataaagcagcact
ttgctaacatgtttaaatcagtttccaactttctatattctgaaacacgg
cccagtgtttcaggggaaagaagtgtagacctgggattgcatctcaaagt
ggggtctcagaccacctacattgcagtcactcatggggatcactaaaagc
agatttggggcttgacccagtccagctgagtcagacactctgcaggtggg
ccttgaacccctgcactaagaacacagtccctgaatggttctcatcccac
tgctgtctgagtccatggctgggcatccaccatttctgctgaaggactga
agtcagcatcaaatcttaacctcttgaattcttcaatttctgtagacttg
gtgttttaaagttgaaccttgcctccaccacctctttgaagccaggattt
gcttagaagattaaggtccctccagatactttggtctccctgctgtccgc
caccaagtaagctagccaatgctggtctttcacagtaacatttggtgctg
gtcagcacactgtatgggctaacatctgagccctggaataggaaaggcaa
atataaatagatttgaattgaggttggacagaatttggcaggctcaaaaa
caaaaggaaagaaaagaaagaaaaaataaaagcagtgtgctgggtgctga
tggggtgacaagcagggcctgccaattgagagatggcgtggcccagtggc
tcctc
gaattccttcttattccccatcgttagtatttatattgtattactcatag
atgttagacattgctaacagatttagttgtgttttgtgaaagttaaaaat
ttctcttcttccttaaaaacctagaaattcagatgaaatgaaatgcaaaa
agctattgtagacctctttgtgtgtgtgtggcttaatcacagaaagcgtt
aaatgaaataaaaatttaaatataattttaggacgttcttcttccagcag
acacttaggtggtacttctgggaagcagtctgaattgaggaatttggcat
gattttgaatagtgggcaaaagcatatttaaattatattaaatgtgtagg
agtaattttaatataggaaatatattttgtcataatttctagagcttttt
attatttctacttttggaaaatggaatttggttgattttttgcccagaaa
aatattattctttttaatgaaaaaatagagtttataactgagatttctag
tcattataccaggataacaatgaggtcctctgactctccttgcctttgtg
agagaacaaacaacttagcaacctatcacaaatacagaacactgctgctt
tcttcttagtatatattagtgtaagtattatattaaatatgcttgtaatg
tgtatgtatgtgtaaatatacacacaaatatatatttaacaattaatagt
gtaactatattagtacataatagtataactcaattagccattgctttctt
ctgttagagtttctgtgtgaaaacagcagccagctgaaaaggaagctctc
catcgtttgcactgtctttcagaggcctcactgcaacttaggtaacatga
tttctaatatgtccctaggactgtggaaagaaactggctttgtagaatgt
gtacatttgaacatcatggaagaataaatatctttcccttgcatcaaatt
gtatccagtgatactattttttatgcctcttactaggaaatgaaatacct
ctaatttagtgcttggaattttatttccactaaatttcttccgatctgtg
agcacatagtacagctaggacctgatcttcattacagtgcgataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_83445660_83446767
seq2: B6Ng01-012M19.b_44_1148

seq1  GAATTCAACCTACTTAACATTAAAACAGTCTGTTTTGTTCAAGTACTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTACTTAACATTAAAACAGTCTGTTTTGTTCAAGTACTCCC  50

seq1  CTAAGATGGCATGAGAGACAGAGAACCATAGATCCTGCTTACAAGTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGGCATGAGAGACAGAGAACCATAGATCCTGCTTACAAGTTCCA  100

seq1  CAGTGCATTTTATCAGGAAAGCTATCTATCCAACAGTTCTCTTCAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATTTTATCAGGAAAGCTATCTATCCAACAGTTCTCTTCAGAAAA  150

seq1  ATTTTAATGATCCAAGGTCACACCTCTTAAAAGAATGAGGTCTAGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGATCCAAGGTCACACCTCTTAAAAGAATGAGGTCTAGTTTTA  200

seq1  CATAAGAAGGTCCAACTCGCAGGGTTTTATTTTCTTTTTATGCTCAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAAGGTCCAACTCGCAGGGTTTTATTTTCTTTTTATGCTCAGACC  250

seq1  TCACAAACCGAGGCCCACAGTCTTCAAATACCGCTCCTTGTTAAAATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACCGAGGCCCACAGTCTTCAAATACCGCTCCTTGTTAAAATTGA  300

seq1  ACTCAGAAAAAGGTTACTCTACCTCAGAATTTTAAATAAAGCTTCTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAAAAGGTTACTCTACCTCAGAATTTTAAATAAAGCTTCTACAA  350

seq1  CAAAGTGCAGTGTTCCAACGCTTTAAATAAACCTGAAATAAAGCAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGCAGTGTTCCAACGCTTTAAATAAACCTGAAATAAAGCAGCACT  400

seq1  TTGCTAACATGTTTAAATCAGTTTCCAACTTTCTATATTCTGAAACACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAACATGTTTAAATCAGTTTCCAACTTTCTATATTCTGAAACACGG  450

seq1  CCCAGTGTTTCAGGGGAAAGAAGTGTAGACCTGGGATTGCATCTCAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTTTCAGGGGAAAGAAGTGTAGACCTGGGATTGCATCTCAAAGT  500

seq1  GGGGTCTCAGACCACCTACATTGCAGTCACTCATGGGGATCACTAAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTCAGACCACCTACATTGCAGTCACTCATGGGGATCACTAAAAGC  550

seq1  AGATTTGGGGCTTGACCCAGTCCAGCTGAGTCAGACACTCTGCAGGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGGGCTTGACCCAGTCCAGCTGAGTCAGACACTCTGCAGGTGGG  600

seq1  CCTTGAACCCCTGCACTAAGAACACAGTCCCTGAATGGTTCTCATCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACCCCTGCACTAAGAACACAGTCCCTGAATGGTTCTCATCCCAC  650

seq1  TGCTGTCTGAGTCCATGGCTGGGCATCCACCATTTCTGCTGAAGGACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTGAGTCCATGGCTGGGCATCCACCATTTCTGCTGAAGGACTGA  700

seq1  AGTCAGCATCAAATCTTAACCTCTTGAATTCTTCAATTTCTGTAGACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCATCAAATCTTAACCTCTTGAATTCTTCAATTTCTGTAGACTTG  750

seq1  GTGTTTTAAAGTTGAACCTTGCCTCCACCACCTCTTTGAAGCCAGGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAAAGTTGAACCTTGCCTCCACCACCTCTTTGAAGCCAGGATTT  800

seq1  GCTTAGAAGATTAAGGTCCCTCCAGATACTTTGGTCTCCCTGCTGTCCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAAGATTAAGGTCCCTCCAGATACTTTGGTCTCCCTGCTGTCCGC  850

seq1  CACCAAGTAAGCTAGCCAATGCTGGTCTTTCACAGTAACATTTGGTGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTAAGCTAGCCAATGCTGGTCTTTCACAGTAACATTTGGTGCTG  900

seq1  GTCAGCACACTGTATGGGCTAACATCTGAGCCCTGGAATAGGAAAGGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCACACTGTATGGGCTAACATCTGAGCCCTGGAATAGGAAAGGCAA  950

seq1  ATATAAATAGATTTGAATTGAGGTTGGACAAGAATTTGGCAGGCTCAAAA  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATATAAATAGATTTGAATTGAGGTTGGAC-AGAATTTGGCAGGCTCAAAA  999

seq1  ACAAAAGGAAAGAAAAAGAAAAGAAAAAATAAAAGCAGTGTGCTGTGTGC  1050
      ||||||||||||||||   |||||||||||||||||||||||||| ||||
seq2  ACAAAAGGAAAGAAAA--GAAAGAAAAAATAAAAGCAGTGTGCTGGGTGC  1047

seq1  TGATGGAGTGGACAAGCAGGG-CTGCCAATTGAGAGATGCCGTGGCCCAG  1099
      |||||| || ||||||||||| ||||||||||||||||| ||||||||||
seq2  TGATGGGGT-GACAAGCAGGGCCTGCCAATTGAGAGATGGCGTGGCCCAG  1096

seq1  TGGCTCCTC  1108
      |||||||||
seq2  TGGCTCCTC  1105

seq1: chr13_83590949_83592057
seq2: B6Ng01-012M19.g_66_1161 (reverse)

seq1  CTTATCGGCACGTTGTAATGAAGAATCAGCTCACATAGCTGTTACTATGG  50
      |||||| ||||  |||||||||| ||||| |  | |||||| |||||| |
seq2  CTTATC-GCAC--TGTAATGAAG-ATCAGGT--CCTAGCTG-TACTAT-G  42

seq1  TGCTCACAGATCTGAAGAAAATTTTAGTGGAAATAAAATTCCAAAGCACT  100
      |||||||||||| |||||||  |||||||||||||||||||| |||||||
seq2  TGCTCACAGATCGGAAGAAA--TTTAGTGGAAATAAAATTCC-AAGCACT  89

seq1  AAATTTAGAGGTATTTCATTTCCTAGTAAGAGGCAT-AAAAATAGTATCA  149
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAA-TTAGAGGTATTTCATTTCCTAGTAAGAGGCATAAAAAATAGTATCA  138

seq1  CTGGATACAATTTGAATTGCAAGGGAAAGATATTTATTCCTCCATGATGT  199
      |||||||||||||||  |||||||||||||||||||||| ||||||||||
seq2  CTGGATACAATTTGA--TGCAAGGGAAAGATATTTATTCTTCCATGATGT  186

seq1  TCAAATGTACACATTCTACAAAGCCAGTTTCTTTCCACAGTCCTAGGGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTACACATTCTACAAAGCCAGTTTCTTTCCACAGTCCTAGGGAC  236

seq1  ATATTAGAAATCATGTTACCTAAGTTGCAGTGAGGCCTCTGAAAGACAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAAATCATGTTACCTAAGTTGCAGTGAGGCCTCTGAAAGACAGT  286

seq1  GCAAACGATGGAGAGCTTCCTTTTCAGCTGGCTGCTGTTTTCACACAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACGATGGAGAGCTTCCTTTTCAGCTGGCTGCTGTTTTCACACAGAA  336

seq1  ACTCTAACAGAAGAAAGCAATGGCTAATTGAGTTATACTATTATGTACTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAACAGAAGAAAGCAATGGCTAATTGAGTTATACTATTATGTACTA  386

seq1  ATATAGTTACACTATTAATTGTTAAATATATATTTGTGTGTATATTTACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTACACTATTAATTGTTAAATATATATTTGTGTGTATATTTACA  436

seq1  CATACATACACATTACAAGCATATTTAATATAATACTTACACTAATATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACACATTACAAGCATATTTAATATAATACTTACACTAATATAT  486

seq1  ACTAAGAAGAAAGCAGCAGTGTTCTGTATTTGTGATAGGTTGCTAAGTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAAGAAAGCAGCAGTGTTCTGTATTTGTGATAGGTTGCTAAGTTG  536

seq1  TTTGTTCTCTCACAAAGGCAAGGAGAGTCAGAGGACCTCATTGTTATCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTCTCACAAAGGCAAGGAGAGTCAGAGGACCTCATTGTTATCCT  586

seq1  GGTATAATGACTAGAAATCTCAGTTATAAACTCTATTTTTTCATTAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAATGACTAGAAATCTCAGTTATAAACTCTATTTTTTCATTAAAAA  636

seq1  GAATAATATTTTTCTGGGCAAAAAATCAACCAAATTCCATTTTCCAAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATATTTTTCTGGGCAAAAAATCAACCAAATTCCATTTTCCAAAAG  686

seq1  TAGAAATAATAAAAAGCTCTAGAAATTATGACAAAATATATTTCCTATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAATAAAAAGCTCTAGAAATTATGACAAAATATATTTCCTATAT  736

seq1  TAAAATTACTCCTACACATTTAATATAATTTAAATATGCTTTTGCCCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTACTCCTACACATTTAATATAATTTAAATATGCTTTTGCCCACT  786

seq1  ATTCAAAATCATGCCAAATTCCTCAATTCAGACTGCTTCCCAGAAGTACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAATCATGCCAAATTCCTCAATTCAGACTGCTTCCCAGAAGTACC  836

seq1  ACCTAAGTGTCTGCTGGAAGAAGAACGTCCTAAAATTATATTTAAATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGTGTCTGCTGGAAGAAGAACGTCCTAAAATTATATTTAAATTTT  886

seq1  TATTTCATTTAACGCTTTCTGTGATTAAGCCACACACACACAAAGAGGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTTAACGCTTTCTGTGATTAAGCCACACACACACAAAGAGGTC  936

seq1  TACAATAGCTTTTTGCATTTCATTTCATCTGAATTTCTAGGTTTTTAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGCTTTTTGCATTTCATTTCATCTGAATTTCTAGGTTTTTAAGG  986

seq1  AAGAAGAGAAATTTTTAACTTTCACAAAACACAACTAAATCTGTTAGCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGAAATTTTTAACTTTCACAAAACACAACTAAATCTGTTAGCAA  1036

seq1  TGTCTAACATCTATGAGTAATACAATATAAATACTAACGATGGGGAATAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAACATCTATGAGTAATACAATATAAATACTAACGATGGGGAATAA  1086

seq1  GAAGGAATTC  1109
      ||||||||||
seq2  GAAGGAATTC  1096