BAC Information

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BAC

Clone NameB6Ng01-012N09
Chromosome13 (Build37)
Map Location 55,945,985 - 56,114,198
singlet/doubletdoublet
Overlap genenone
Upstream geneUnc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1
Downstream geneH2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012N09.bB6Ng01-012N09.g
ACCDH847811DH847812
length1,0031,084
definitionDH847811|Mus musculus domesticus DNA, BAC clone: B6Ng01-012N09, 5' end.DH847812|Mus musculus domesticus DNA, BAC clone: B6Ng01-012N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,945,985 - 55,946,993)(56,113,108 - 56,114,198)
sequence
gaattccccgggggaatcgaggagtggatgggcgggaaggagggcagcgt
gactataacgggcaccactggagatgctgactttgacgtcttgggactaa
ttcagcttcttgattccagggaacatttcacgtatgtctgcttgtgaggt
gttgtgtagccatttcctctaaattcagacattccctcctggaaggagga
ggcaagcccccaagactcaagaagctaaggaaatgtgggaggctcaggac
ctatacagctgacaagctccccgaggtcacacaaacagcagacagtggct
gggagggagggatctctcgggtagagctccctgcaaggtcggcagtgagc
tccaggggcacagctgtcttgagttgttacccaccttggggtgggatttt
tctgggactcagctgcctttgagtcatcgatggtcttgtaagtgaccgtt
cacccatggcctgtcactaacgccaaaaaaatcactggctcctcaagctg
gaattggtgggattttttttttttcttccatctgtccttgctaccatgct
tggtagcatgtttgtttgtgtctacctggggaaagcacaatgatgaagaa
ctacatagagtcgcacatatgctttatatgtcctggtcttgatagtgtat
tggtaaaatgtggccactgggaactggggtgaaagggacacagcaggctc
ctctctgccatcttggcaacttctaaaatgagcaaaagatcagattgaag
ttctgtttaggggccaaggatatgtctggacagcatatacgagtggccag
aaggaccctttggaaaagcagaatggcccgggaccagaggggagaggggg
agagctggagggttgagcacatatttgagtcactttgaggtcattcagac
cggcatctggcagagccagcaggttgatgctagatgcagaacagcttatg
ctgaagccaaggattctggcgaatgctcagaaggagaagaaggctgggtg
ttt
gaattcatctctgggatagttgcgattactttctttaaagaaggatcaaa
acattgacattcatccaagagccctgctgtgtaacctgagagcagatgat
gttcattaataagaaatgcacaaggcacttaccctcatgttcttaagatt
ccctcaacattcctcggggagaagtgggccccttggctgtaagcccctcc
ttttatagaagggcttgtgtcacaggctagcccttccaggattacaaact
taggccatatgaatagacattcacctctaggaacaagaaaaaggaggttg
ttcttgcttgtgtttggataacttctgcaaaggaacattgcattctgggc
tcttggtgggcttgaaacacttagagtaagcccatgggtgagtgctaaga
aggacttgggggtccaggacatatgacacagcatagggtctggatttatg
tgacctgctggcatccttatttttgctgctgttaactggttctcttaccc
tcttcagcttcactctgagtctcctgaggtcagggatgctaaagggcacc
acttagcaaccaatgtacccagaaaatactggttgaatgagtcagtcaag
acgtaatcaaaagggtagccgtgggatgccagtgtctgctcatcctatct
ccatggggtgaagagacggtcctaccccttcgctgaagtaagcaataatt
acaacgtgcctcccactgagatgccagcagctagaggatcaaatacttta
tgggtctgctagcaaggcaggatcccatacagaactcctaacaatggggc
agaaacagtagattgtgctgctgtaggacctgaattaattactcagcagt
ctctccttctatctctgctttctttagtgtcacatgcctgttcttgcttc
ctttctcttgctgtgatgaagcacttctgacagaaagcaacttgcaagga
ggaaaggtttatttggcttcttttcaagttcaagttcatcactggaggga
actggggtggcacctcatggaagagcgggagtagaatcacatagatactg
cctgatggctggctactaccttttctcggctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55945985_55946993
seq2: B6Ng01-012N09.b_47_1049

seq1  GAATTCCCCGGGGGAATCGAGGAGTGGATGGGCGGGAAGGAGGGCAGCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCGGGGGAATCGAGGAGTGGATGGGCGGGAAGGAGGGCAGCGT  50

seq1  GACTATAACGGGCACCACTGGAGATGCTGACTTTGACGTCTTGGGACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATAACGGGCACCACTGGAGATGCTGACTTTGACGTCTTGGGACTAA  100

seq1  TTCAGCTTCTTGATTCCAGGGAACATTTCACGTATGTCTGCTTGTGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTCTTGATTCCAGGGAACATTTCACGTATGTCTGCTTGTGAGGT  150

seq1  GTTGTGTAGCCATTTCCTCTAAATTCAGACATTCCCTCCTGGAAGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTAGCCATTTCCTCTAAATTCAGACATTCCCTCCTGGAAGGAGGA  200

seq1  GGCAAGCCCCCAAGACTCAAGAAGCTAAGGAAATGTGGGAGGCTCAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCCCCCAAGACTCAAGAAGCTAAGGAAATGTGGGAGGCTCAGGAC  250

seq1  CTATACAGCTGACAAGCTCCCCGAGGTCACACAAACAGCAGACAGTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGCTGACAAGCTCCCCGAGGTCACACAAACAGCAGACAGTGGCT  300

seq1  GGGAGGGAGGGATCTCTCGGGTAGAGCTCCCTGCAAGGTCGGCAGTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGGGATCTCTCGGGTAGAGCTCCCTGCAAGGTCGGCAGTGAGC  350

seq1  TCCAGGGGCACAGCTGTCTTGAGTTGTTACCCACCTTGGGGTGGGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGCACAGCTGTCTTGAGTTGTTACCCACCTTGGGGTGGGATTTT  400

seq1  TCTGGGACTCAGCTGCCTTTGAGTCATCGATGGTCTTGTAAGTGACCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACTCAGCTGCCTTTGAGTCATCGATGGTCTTGTAAGTGACCGTT  450

seq1  CACCCATGGCCTGTCACTAACGCCAAAAAAATCACTGGCTCCTCAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGGCCTGTCACTAACGCCAAAAAAATCACTGGCTCCTCAAGCTG  500

seq1  GAATTGGTGGGATTTTTTTTTTTTCTTCCATCTGTCCTTGCTACCATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGTGGGATTTTTTTTTTTTCTTCCATCTGTCCTTGCTACCATGCT  550

seq1  TGGTAGCATGTTTGTTTGTGTCTACCTGGGGAAAGCACAATGATGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCATGTTTGTTTGTGTCTACCTGGGGAAAGCACAATGATGAAGAA  600

seq1  CTACATAGAGTCGCACATATGCTTTATATGTCCTGGTCTTGATAGTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGAGTCGCACATATGCTTTATATGTCCTGGTCTTGATAGTGTAT  650

seq1  TGGTAAAATGTGGCCACTGGGAACTGGGGTGAAAGGGACACAGCAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAATGTGGCCACTGGGAACTGGGGTGAAAGGGACACAGCAGGCTC  700

seq1  CTCTCTGCCATCTTGGCAACTTCTAAAATGAGCAAAAGATCAGATTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCCATCTTGGCAACTTCTAAAATGAGCAAAAGATCAGATTGAAG  750

seq1  TTCTGTTTAGGGGCCAAGGATATGTCTGGACAGCATATACGAGTGGCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTAGGGGCCAAGGATATGTCTGGACAGCATATACGAGTGGCCAG  800

seq1  AAGGACCC-TTGGAAAAGCAGAAGGGCCCGGGACCAGAGGGGAGA-GGGG  848
      |||||||| |||||||||||||| ||||||||||||||||||||| ||||
seq2  AAGGACCCTTTGGAAAAGCAGAATGGCCCGGGACCAGAGGGGAGAGGGGG  850

seq1  AGAGCTGGAGGGTTGAGGCACAGATTTGAGTCACTTTGAGGCCATTCAGA  898
      |||||||||||||||| ||||| |||||||||||||||||| ||||||||
seq2  AGAGCTGGAGGGTTGA-GCACATATTTGAGTCACTTTGAGGTCATTCAGA  899

seq1  CCCGCATCTGGCAGAGCCAGCAGGTTGATGCTAGATGCAAGAACAGCCTA  948
      || ||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  CCGGCATCTGGCAGAGCCAGCAGGTTGATGCTAGATGC-AGAACAGCTTA  948

seq1  TGCTGAAAGCCAAGGAGTTCTGGCAGAATGCTCAGGAAGGAGAAAGAAGG  998
      ||||| |||||||||| ||||||| ||||||||| ||||||| |||||||
seq2  TGCTG-AAGCCAAGGA-TTCTGGC-GAATGCTCA-GAAGGAG-AAGAAGG  993

seq1  CATGGGTGTTT  1009
      | |||||||||
seq2  C-TGGGTGTTT  1003

seq1: chr13_56113108_56114198
seq2: B6Ng01-012N09.g_67_1150 (reverse)

seq1  GTGAGCCCGTGAG-AAAGTTAGTGAGCCAGCCATCAGGCAGTATTCCTAT  49
      |||||||   ||| |||| |||| ||||||||||||||||||||  ||||
seq2  GTGAGCC---GAGAAAAGGTAGT-AGCCAGCCATCAGGCAGTAT--CTAT  44

seq1  GTGGTTTCTACCTCCCGCTCTTCCTTGAGTTCCCACCCCAGTTCCCCTCA  99
      || | ||||| ||||||||||||| |||| | ||||||||||||||  ||
seq2  GT-GATTCTA-CTCCCGCTCTTCCATGAGGTGCCACCCCAGTTCCCTCCA  92

seq1  GTGATGAACTTGAACTTG-AAAGGAGCCAAATAAACCCTTTCCTCCTTGC  148
      |||||||||||||||||| |||| ||||||||||| ||||||||||||||
seq2  GTGATGAACTTGAACTTGAAAAGAAGCCAAATAAA-CCTTTCCTCCTTGC  141

seq1  AAGTTGCTTTCTGTCAG-AGTGCTTCATCACAGCAAGAGAAAGGAAGCAA  197
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGTTGCTTTCTGTCAGAAGTGCTTCATCACAGCAAGAGAAAGGAAGCAA  191

seq1  GAACAGGCATGTGACAACTAAAGGAAGCAGAGATAGAGGGAGAGACTGCT  247
      ||||||||||||||| ||||||| ||||||||||||| ||||||||||||
seq2  GAACAGGCATGTGAC-ACTAAAGAAAGCAGAGATAGAAGGAGAGACTGCT  240

seq1  GAGTAATTAATTCAGGTCCTACAGCAGCACAATCTACTGTTTCTGCCCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATTAATTCAGGTCCTACAGCAGCACAATCTACTGTTTCTGCCCCA  290

seq1  TTGTTAGGAGTTCTGTATGGGATCCTGCCTTGCTAGCAGACCCATAAAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGGAGTTCTGTATGGGATCCTGCCTTGCTAGCAGACCCATAAAGT  340

seq1  ATTTGATCCTCTAGCTGCTGGCATCTCAGTGGGAGGCACGTTGTAATTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCCTCTAGCTGCTGGCATCTCAGTGGGAGGCACGTTGTAATTAT  390

seq1  TGCTTACTTCAGCGAAGGGGTAGGACCGTCTCTTCACCCCATGGAGATAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTTCAGCGAAGGGGTAGGACCGTCTCTTCACCCCATGGAGATAG  440

seq1  GATGAGCAGACACTGGCATCCCACGGCTACCCTTTTGATTACGTCTTGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCAGACACTGGCATCCCACGGCTACCCTTTTGATTACGTCTTGAC  490

seq1  TGACTCATTCAACCAGTATTTTCTGGGTACATTGGTTGCTAAGTGGTGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATTCAACCAGTATTTTCTGGGTACATTGGTTGCTAAGTGGTGCC  540

seq1  CTTTAGCATCCCTGACCTCAGGAGACTCAGAGTGAAGCTGAAGAGGGTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCATCCCTGACCTCAGGAGACTCAGAGTGAAGCTGAAGAGGGTAA  590

seq1  GAGAACCAGTTAACAGCAGCAAAAATAAGGATGCCAGCAGGTCACATAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCAGTTAACAGCAGCAAAAATAAGGATGCCAGCAGGTCACATAAA  640

seq1  TCCAGACCCTATGCTGTGTCATATGTCCTGGACCCCCAAGTCCTTCTTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCCTATGCTGTGTCATATGTCCTGGACCCCCAAGTCCTTCTTAG  690

seq1  CACTCACCCATGGGCTTACTCTAAGTGTTTCAAGCCCACCAAGAGCCCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCCATGGGCTTACTCTAAGTGTTTCAAGCCCACCAAGAGCCCAG  740

seq1  AATGCAATGTTCCTTTGCAGAAGTTATCCAAACACAAGCAAGAACAACCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATGTTCCTTTGCAGAAGTTATCCAAACACAAGCAAGAACAACCT  790

seq1  CCTTTTTCTTGTTCCTAGAGGTGAATGTCTATTCATATGGCCTAAGTTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTTGTTCCTAGAGGTGAATGTCTATTCATATGGCCTAAGTTTG  840

seq1  TAATCCTGGAAGGGCTAGCCTGTGACACAAGCCCTTCTATAAAAGGAGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGGAAGGGCTAGCCTGTGACACAAGCCCTTCTATAAAAGGAGGG  890

seq1  GCTTACAGCCAAGGGGCCCACTTCTCCCCGAGGAATGTTGAGGGAATCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGCCAAGGGGCCCACTTCTCCCCGAGGAATGTTGAGGGAATCTT  940

seq1  AAGAACATGAGGGTAAGTGCCTTGTGCATTTCTTATTAATGAACATCATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATGAGGGTAAGTGCCTTGTGCATTTCTTATTAATGAACATCATC  990

seq1  TGCTCTCAGGTTACACAGCAGGGCTCTTGGATGAATGTCAATGTTTTGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAGGTTACACAGCAGGGCTCTTGGATGAATGTCAATGTTTTGAT  1040

seq1  CCTTCTTTAAAGAAAGTAATCGCAACTATCCCAGAGATGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTAAAGAAAGTAATCGCAACTATCCCAGAGATGAATTC  1084