BAC Information

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BAC

Clone NameB6Ng01-013H23
Chromosome13 (Build37)
Map Location 116,368,251 - 116,506,012
singlet/doubletdoublet
Overlap geneLOC100041045
Upstream gene4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
Downstream geneEG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013H23.bB6Ng01-013H23.g
ACCDH848297DH848298
length1,099988
definitionDH848297|Mus musculus domesticus DNA, BAC clone: B6Ng01-013H23, 5' end.DH848298|Mus musculus domesticus DNA, BAC clone: B6Ng01-013H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,368,251 - 116,369,371)(116,505,021 - 116,506,012)
sequence
gaattccatgagtccttagttctagtgttaatagctggttatatagaagg
ccaaatataaaaagtaaagaaatgtttctttacatggacattggagatca
atactcctaagatcaattgttcatattacagtttcagaaatagaaattgt
ctaatttcttttaatttataagacaacaaaaaccactaattacatttctg
gtatatcataaatgttgcataacacacttgttcccttagtatattgtctg
taataattcttaccattaggcaaaacactaataagttttatataatatat
agagaagaattttcaacatctaactttccctcagtaaaatatatatgaaa
aagtattatctcacatatctctaataaaataataatatggagcaagattg
agacatgaatgaactgtatatgtaccacactcaatgcatataacaaagaa
taaactaacaacattctttagttcagaaatgagggtacttgaataaaaca
ggaggtgcttaaattcaagattattcactttttctcattggaatattgga
tattctcatgggagtgcaatactttttccatccattaaagaaatgacaaa
agacccattcactatttcgtagtcattattgataatctgataattgatca
ctgagaaagccggtgtgataaatgttttcatattgatggctgagcttagt
cacctacatttctagtgatatgtgatagggttaaagaaaatcttagctct
aatgtaaggacagcataattattccattttattttttgtttctttgttgg
gtttttttttttttttcaagacagggttttctctgtgtcgacctggctgt
cctggaactcactttgtagacaaggctggcctgaactcagaagtccacct
gcttctggattaaagcgtgtggccaccacacccaggatatttaagagaga
tgcctctgccctctcattatttaagtcctgggtcaggcccaataagataa
gatcacacaagtaggttaaatgttacacacctagcaggtgaaattcaaac
ctttccactacatgtcacatggatgaggattaatcattaaacagtacat
gaattcttttattcagtaatcaaatgacataaaatgctccagatacagaa
gacaactgctattgcaggcatggaaacagagaaataaagtgttccaagaa
atatctgttttttttttctttaaaaataagttttgaaggtctgtacaatt
tttaagcggaaaatcaatttcggcagagccctgcatctattatgtgaaca
actccatgttttgatccttttaaaaaataagagaaggcaattttggaaat
cagttttgtggctgcttctgccagggctaaaattgttcatcaaatgtgaa
ataaaactatatgaagtcagaaaggccagtaaggtcctatgcacaattat
aaaaatgtctctctttaaaaatgcaattcaagtaaaagcctgtcaatgcc
ccttaaccttttcttgaagaaagggatggtaaatacatcaggacaggtaa
agaagtattttccagtgaccgaatattcccgatatcatttgctccatgat
aatgaacccccaaacacagtgcctcaaagtgacagggtgctcctccttcg
attatggtggactggattcaagtggtcggtcctgcaagactaacatgaaa
ttacaaaaacaaaataaaataaaagtattttctcatcagagtggaagtgt
tgtgttgactcactaccaccccttatggttagaagaagtgaacattggct
cagatttttactttccaccttacctttccacatggccacccacctaatag
gttattgatatcactcactcttagtgacagactttacgggtaatcctatg
acttcaaagccaatggtgacatttccctgtattatggtcttggaaaacta
catgggtactttttgctatactgtatagctatgggcatggtcaaagttat
gattaacttccaggaaaggagctgagctttgagactcggtgtaggggaat
gaagcatttgagttaccttgaatccactagacactaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116368251_116369371
seq2: B6Ng01-013H23.b_48_1146

seq1  GAATTCCATGAGTCCTTAGTTCTAGTGTTAATAGCTGGTTATATAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGTCCTTAGTTCTAGTGTTAATAGCTGGTTATATAGAAGG  50

seq1  CCAAATATAAAAAGTAAAGAAATGTTTCTTTACATGGACATTGGAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATAAAAAGTAAAGAAATGTTTCTTTACATGGACATTGGAGATCA  100

seq1  ATACTCCTAAGATCAATTGTTCATATTACAGTTTCAGAAATAGAAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTAAGATCAATTGTTCATATTACAGTTTCAGAAATAGAAATTGT  150

seq1  CTAATTTCTTTTAATTTATAAGACAACAAAAACCACTAATTACATTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCTTTTAATTTATAAGACAACAAAAACCACTAATTACATTTCTG  200

seq1  GTATATCATAAATGTTGCATAACACACTTGTTCCCTTAGTATATTGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCATAAATGTTGCATAACACACTTGTTCCCTTAGTATATTGTCTG  250

seq1  TAATAATTCTTACCATTAGGCAAAACACTAATAAGTTTTATATAATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTCTTACCATTAGGCAAAACACTAATAAGTTTTATATAATATAT  300

seq1  AGAGAAGAATTTTCAACATCTAACTTTCCCTCAGTAAAATATATATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAATTTTCAACATCTAACTTTCCCTCAGTAAAATATATATGAAA  350

seq1  AAGTATTATCTCACATATCTCTAATAAAATAATAATATGGAGCAAGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTATCTCACATATCTCTAATAAAATAATAATATGGAGCAAGATTG  400

seq1  AGACATGAATGAACTGTATATGTACCACACTCAATGCATATAACAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGAATGAACTGTATATGTACCACACTCAATGCATATAACAAAGAA  450

seq1  TAAACTAACAACATTCTTTAGTTCAGAAATGAGGGTACTTGAATAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAACAACATTCTTTAGTTCAGAAATGAGGGTACTTGAATAAAACA  500

seq1  GGAGGTGCTTAAATTCAAGATTATTCACTTTTTCTCATTGGAATATTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGCTTAAATTCAAGATTATTCACTTTTTCTCATTGGAATATTGGA  550

seq1  TATTCTCATGGGAGTGCAATACTTTTTCCATCCATTAAAGAAATGACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCATGGGAGTGCAATACTTTTTCCATCCATTAAAGAAATGACAAA  600

seq1  AGACCCATTCACTATTTCGTAGTCATTATTGATAATCTGATAATTGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATTCACTATTTCGTAGTCATTATTGATAATCTGATAATTGATCA  650

seq1  CTGAGAAAGCCGGTGTGATAAATGTTTTCATATTGATGGCTGAGCTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGCCGGTGTGATAAATGTTTTCATATTGATGGCTGAGCTTAGT  700

seq1  CACCTACATTTCTAGTGATATGTGATAGGGTTAAAGAAAATCTTAGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACATTTCTAGTGATATGTGATAGGGTTAAAGAAAATCTTAGCTCT  750

seq1  AATGTAAGGACAGCATAATTATTCCATTTTATTTTTTGTTTCTTTGTTTG  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGTAAGGACAGCATAATTATTCCATTTTATTTTTTGTTTCTTTGTTGG  800

seq1  GTTTTTTTTTTTTTTTTTCAAGACAGGG-TTTCTCTGTGTCGACCTGGCT  849
      |  ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  G--TTTTTTTTTTTTTTTCAAGACAGGGTTTTCTCTGTGTCGACCTGGCT  848

seq1  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAGTCCA  899
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  GTCCTGGAACTCACTTTGTAGACAAGGCTGGCC-TGAACTCAGAAGTCCA  897

seq1  CCTGCCTCTGGGATTAAAGGCGTGT-GCCACCACACCCAGGGATTATTTT  948
      ||||| ||| |||||||| |||||| |||||||||||||||   ||||| 
seq2  CCTGCTTCT-GGATTAAA-GCGTGTGGCCACCACACCCAGG--ATATTTA  943

seq1  AGAGGAAGATTGCCCTCTTGCCCTCTCCATTATTTTAGGTCCTTGGGTCC  998
      ||||  ||||   |||| |||||||| ||||| |||| |||| ||||| |
seq2  AGAG--AGAT--GCCTC-TGCCCTCT-CATTA-TTTAAGTCC-TGGGT-C  984

seq1  AGGCCCAAT-AGATAAGATCAACACAGGTAAGTTAAAATGTTTACACA-C  1046
      ||||||||| |||||||||| ||||| ||| ||| ||||| ||||||| |
seq2  AGGCCCAATAAGATAAGATC-ACACAAGTAGGTT-AAATG-TTACACACC  1031

seq1  TAGCAGGTTGATATTCAAACCTTTCACTTACATTGTCACAATGGATGAGG  1096
      ||||||| ||| |||||||||||||   |||| |||||| ||||||||||
seq2  TAGCAGG-TGAAATTCAAACCTTTCCACTACA-TGTCAC-ATGGATGAGG  1078

seq1  TATTTAAATCATTTAAACAGTACAT  1121
       |||  ||||| |||||||||||||
seq2  -ATT--AATCA-TTAAACAGTACAT  1099

seq1: chr13_116505021_116506012
seq2: B6Ng01-013H23.g_68_1055 (reverse)

seq1  TTTAGTGTTCTAGTGATTTTCAAAGGTAACCTCAAATTCCTCATTCCCCT  50
      ||||||| |||||||  ||   ||||||| ||||||| | ||||||||| 
seq2  TTTAGTG-TCTAGTGGATT--CAAGGTAA-CTCAAATGCTTCATTCCCC-  45

seq1  TACACCTGTGTCTCAAAGCTCAGCCTCCTTTCCTGAATGTAAATTCAT-A  99
      |||||| | |||||||||||||| ||||||||||| | || || |||| |
seq2  TACACC-GAGTCTCAAAGCTCAG-CTCCTTTCCTGGAAGTTAA-TCATAA  92

seq1  CTTTGA-CATGCCCATAGCTAATACAGTATAGCAAAAAGTACCCATGTAG  148
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTTGACCATGCCCATAGCT-ATACAGTATAGCAAAAAGTACCCATGTAG  141

seq1  TTTT-CAAGACCATAATACA-GGAAATGTCACCATTGGCCTTTGAAGTCA  196
      |||| ||||||||||||||| ||||||||||||||||| |||||||||||
seq2  TTTTCCAAGACCATAATACAGGGAAATGTCACCATTGG-CTTTGAAGTCA  190

seq1  TAGGA-TACCTGTAAAGTCTGTCACTAAGAGTGAGTGATATCAATAACCT  245
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTACCCGTAAAGTCTGTCACTAAGAGTGAGTGATATCAATAACCT  240

seq1  ATTAGGTGGGTGGCCATGTGGAAAGGTAAGGTGGAAAGTAAAAATCTGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTGGGTGGCCATGTGGAAAGGTAAGGTGGAAAGTAAAAATCTGAG  290

seq1  CCAATGTTCACTTCTTCT-ACCATAAGGGGTGGTAGTGAGTCAACACAAC  344
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCAATGTTCACTTCTTCTAACCATAAGGGGTGGTAGTGAGTCAACACAAC  340

seq1  ACTTCCACTCTGATGAGAAAATACTTTTATTTTATTTTGTTTTTGTAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACTCTGATGAGAAAATACTTTTATTTTATTTTGTTTTTGTAATT  390

seq1  TCATGTTAGTCTTGCAGGACCGACCACTTGAATCCAGTCCACCATAATCG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTAGTCTTGCAGGACCGACCACTTGAATCCAGTCCACCATAATCG  440

seq1  AAGGAGGAGCACCCTGTCACTTTGAGGCACTGTGTTTGGGGGTTCATTAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAGCACCCTGTCACTTTGAGGCACTGTGTTTGGGGGTTCATTAT  490

seq1  CATGGAGCAAATGATATCGGGAATATTCGGTCACTGGAAAATACTTCTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCAAATGATATCGGGAATATTCGGTCACTGGAAAATACTTCTTT  540

seq1  ACCTGTCCTGATGTATTTACCATCCCTTTCTTCAAGAAAAGGTTAAGGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCCTGATGTATTTACCATCCCTTTCTTCAAGAAAAGGTTAAGGGG  590

seq1  CATTGACAGGCTTTTACTTGAATTGCATTTTTAAAGAGAGACATTTTTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACAGGCTTTTACTTGAATTGCATTTTTAAAGAGAGACATTTTTAT  640

seq1  AATTGTGCATAGGACCTTACTGGCCTTTCTGACTTCATATAGTTTTATTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGCATAGGACCTTACTGGCCTTTCTGACTTCATATAGTTTTATTT  690

seq1  CACATTTGATGAACAATTTTAGCCCTGGCAGAAGCAGCCACAAAACTGAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGATGAACAATTTTAGCCCTGGCAGAAGCAGCCACAAAACTGAT  740

seq1  TTCCAAAATTGCCTTCTCTTATTTTTTAAAAGGATCAAAACATGGAGTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATTGCCTTCTCTTATTTTTTAAAAGGATCAAAACATGGAGTTG  790

seq1  TTCACATAATAGATGCAGGGCTCTGCCGAAATTGATTTTCCGCTTAAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATAATAGATGCAGGGCTCTGCCGAAATTGATTTTCCGCTTAAAAA  840

seq1  TTGTACAGACCTTCAAAACTTATTTTTAAAGAAAAAAAAAACAGATATTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGACCTTCAAAACTTATTTTTAAAGAAAAAAAAAACAGATATTT  890

seq1  CTTGGAACACTTTATTTCTCTGTTTCCATGCCTGCAATAGCAGTTGTCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACACTTTATTTCTCTGTTTCCATGCCTGCAATAGCAGTTGTCTT  940

seq1  CTGTATCTGGAGCATTTTATGTCATTTGATTACTGAATAAAAGAATTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTGGAGCATTTTATGTCATTTGATTACTGAATAAAAGAATTC  988