BAC Information

Click to search

BAC

Clone NameB6Ng01-014E22
Chromosome13 (Build37)
Map Location 6,221,799 - 6,373,465
singlet/doubletdoublet
Overlap geneLOC100039395
Upstream gene1700016G22Rik, Klf6, LOC100039388
Downstream genePitrm1, Pfkp, LOC100039532, LOC667611
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014E22.bB6Ng01-014E22.g
ACCDH848891DH848892
length1,095987
definitionDH848891|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E22, 5' end.DH848892|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,221,799 - 6,222,921)(6,372,486 - 6,373,465)
sequence
gaattccaggtgcaggtcttggaacaataagatctgggatgaggcaggta
cttatataattgccttcttcctatgaaataagtcattcatgagggacagt
gatagtcttcagcaaataagagtcagaagaggagttgaagtggctagagg
gaagaattcagtaggacttgggacacagttagtggaaaatgtaaactttt
ctacccatctcctttgttcttgggctacctctttcaaagccaaacatgta
agtaaactgtaaattcatgagacgccatgagcagtcacatagagtctgga
aagcagcattagattcgagttatcatggctctgtgatatcactaggtaag
atttgtgtttttaataaatacatcaaaccggcacacatttcttcccgtta
aaaataaagaattctgatattttttaaaaatcccaaagaatcggtcaggt
agttcaaacagtcatgttgcttttgctgtcttaaccactgttccattgct
gtgaagagacactatgaccatggcaactcctgtaaagaaagcatttttga
ggcttatttgtagttgcagacatttagtcctttattatcatggtaggaaa
taaggtggcacacaggcagacatggtgttggaaaagtagctaagagctat
aatctgaaccactacccaagacagagactcgaaacttggcatgggttttt
gaacgcttaaagctctccccctcctgtgacattctttctccaacaaggcc
acacttcctaatcctttcaatagttccattgtttggtaactaagcatcaa
atattttgactctatggggctgttcttatttaaaccaatacatgaccata
attcgatgtcatggcagcaaaatgcagggatgccctcaggtctgggtcat
gatgttagataactattcagattctgactagagataatcctttactagtg
tttgtctcttaatgatgcatcattaatggtatctattggttctcttgtgc
gggatatattttacaccttctacttcagataacagctggttccagacctt
ccctactagcactactgccatgaacattagtccagatttctgtta

gaattcatatctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtttaggtgtaccttgaggctagggggaaaccttccaatgttgctc
ttcaggcacatcagtcttacgttttcaagtcagtatcattcattggggtg
gaatttaccaactaccaagttgactaggctgactggacagcaaacctcag
caatctgccgatctgttttcccaaaattaggattacaaacacataccagc
atgactcgctttttaaaacgtgggttcaggggaacaaaagttcttcttca
aagcaagcaaactactgggtgaactgtttgctcagccatttgttgattaa
tttcatggatcaatttgggtaagttaaggaatactactaaaatatttgta
ggtatgttcattacgatgccactaaaagagaaatgaagactctaaaagga
aggtctactctcaccagtgtcacattgtcccagaaaaaacagtgtttaga
aggaaggtaaagtctaggctggggcacccatcctctactgctcttggaca
tcagcctctcctcagcatcaaggcttttgggcttggacgtcactactctt
ccagttctctcatgtttgatggcagaccatggtgcttctttgcctccttt
gttctgtcatccaacttatatacagcttctttctttttcttcccggagat
tcctgacgaattgggtcttcctgggtgagtataaaaaccaaagcagaagt
gttttcattcctgtgtcattcaagaaagatcaggtctagggtagtatcca
tatataatatattaatggacatatattgggtaatattcatttatacataa
tatattatatgtttcctttatttaagttgttaaatttaatacattttgat
accataccttgaggttctttgacaattttgggaaatcttgcttccgtttt
ccttcccaactagatccaattaccccactttaattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6221799_6222921
seq2: B6Ng01-014E22.b_47_1141

seq1  GAATTCCAGGTGCAGGTCTTGGAACAATAAGATCTGGGATGAGGCAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCAGGTCTTGGAACAATAAGATCTGGGATGAGGCAGGTA  50

seq1  CTTATATAATTGCCTTCTTCCTATGAAATAAGTCATTCATGAGGGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAATTGCCTTCTTCCTATGAAATAAGTCATTCATGAGGGACAGT  100

seq1  GATAGTCTTCAGCAAATAAGAGTCAGAAGAGGAGTTGAAGTGGCTAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCTTCAGCAAATAAGAGTCAGAAGAGGAGTTGAAGTGGCTAGAGG  150

seq1  GAAGAATTCAGTAGGACTTGGGACACAGTTAGTGGAAAATGTAAACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTCAGTAGGACTTGGGACACAGTTAGTGGAAAATGTAAACTTTT  200

seq1  CTACCCATCTCCTTTGTTCTTGGGCTACCTCTTTCAAAGCCAAACATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATCTCCTTTGTTCTTGGGCTACCTCTTTCAAAGCCAAACATGTA  250

seq1  AGTAAACTGTAAATTCATGAGACGCCATGAGCAGTCACATAGAGTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTGTAAATTCATGAGACGCCATGAGCAGTCACATAGAGTCTGGA  300

seq1  AAGCAGCATTAGATTCGAGTTATCATGGCTCTGTGATATCACTAGGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCATTAGATTCGAGTTATCATGGCTCTGTGATATCACTAGGTAAG  350

seq1  ATTTGTGTTTTTAATAAATACATCAAACCGGCACACATTTCTTCCCGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTTTTAATAAATACATCAAACCGGCACACATTTCTTCCCGTTA  400

seq1  AAAATAAAGAATTCTGATATTTTTTAAAAATCCCAAAGAATCGGTCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGAATTCTGATATTTTTTAAAAATCCCAAAGAATCGGTCAGGT  450

seq1  AGTTCAAACAGTCATGTTGCTTTTGCTGTCTTAACCACTGTTCCATTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAACAGTCATGTTGCTTTTGCTGTCTTAACCACTGTTCCATTGCT  500

seq1  GTGAAGAGACACTATGACCATGGCAACTCCTGTAAAGAAAGCATTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGACACTATGACCATGGCAACTCCTGTAAAGAAAGCATTTTTGA  550

seq1  GGCTTATTTGTAGTTGCAGACATTTAGTCCTTTATTATCATGGTAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATTTGTAGTTGCAGACATTTAGTCCTTTATTATCATGGTAGGAAA  600

seq1  TAAGGTGGCACACAGGCAGACATGGTGTTGGAAAAGTAGCTAAGAGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGGCACACAGGCAGACATGGTGTTGGAAAAGTAGCTAAGAGCTAT  650

seq1  AATCTGAACCACTACCCAAGACAGAGACTCGAAACTTGGCATGGGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAACCACTACCCAAGACAGAGACTCGAAACTTGGCATGGGTTTTT  700

seq1  GAACGCTTAAAGCTCTCCCCCTCCTGTGACATTCTTTCTCCAACAAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTTAAAGCTCTCCCCCTCCTGTGACATTCTTTCTCCAACAAGGCC  750

seq1  ACACTTCCTAATCCTTTCAAATAGTTCCATTGTTTGGTAACTAAGCATTC  800
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  ACACTTCCTAATCCTTTC-AATAGTTCCATTGTTTGGTAACTAAGCA-TC  798

seq1  AAATATTTTGACTCTATGGGGCTGTTCTTATTTAAACCAATACATGACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTGACTCTATGGGGCTGTTCTTATTTAAACCAATACATGACCA  848

seq1  TAATTCGATGTCATGGCAGCAAAAATGCAGGGATGCCCTCAGGTCTGGGT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAATTCGATGTCATGGCAGC-AAAATGCAGGGATGCCCTCAGGTCTGGGT  897

seq1  CATGAATGTTTAGATAACTAATTCAAGATTCTGAACTAGAGATAATCCTT  950
      |||| ||| |||||||||| |||| |||||||| ||||||||||||||||
seq2  CATG-ATG-TTAGATAACT-ATTC-AGATTCTG-ACTAGAGATAATCCTT  942

seq1  TAACTAGTTGTTTTGTCTCTTAATGAATTGCATTCATTAATTGGTATCTA  1000
      | ||||||   |||||||||||||||  |||| ||||||| |||||||||
seq2  T-ACTAGT--GTTTGTCTCTTAATGA--TGCA-TCATTAA-TGGTATCTA  985

seq1  TTGGTATCTCTTAGTGCGGGATATATTTTAACACCTTCTACTTCAGATAA  1050
      ||||| |||||| |||||||||||||||| ||||||||||||||||||||
seq2  TTGGT-TCTCTT-GTGCGGGATATATTTT-ACACCTTCTACTTCAGATAA  1032

seq1  ACAAGCTTGGGTCCCCAGA-CTTCCCTAACTAGCACTTACTGGCCATGAC  1099
         ||||  |||  ||||| ||||||| |||||||| |||| ||||||| 
seq2  --CAGCT--GGT-TCCAGACCTTCCCT-ACTAGCAC-TACT-GCCATGAA  1074

seq1  CATTCTAGGTTCAGATTTCTGTTA  1123
      ||||    || |||||||||||||
seq2  CATT---AGTCCAGATTTCTGTTA  1095


seq1: chr13_6372486_6373465
seq2: B6Ng01-014E22.g_67_1053 (reverse)

seq1  GGAAATAAAGTGTGTAAATTGGATCTAGTTGGGAAAGAAAACGGAAGCAG  50
      |||| ||||||| |  ||||||||||||||||||| ||||||||||||| 
seq2  GGAATTAAAGTGGGGTAATTGGATCTAGTTGGGAAGGAAAACGGAAGCAA  50

seq1  GATTTCCCAAAATTGTCAAAGAACCTCAAGGTATGATATCAAAATGATAT  100
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GATTTCCCAAAATTGTCAAAGAACCTCAAGGTATGGTATCAAAATG-TAT  99

seq1  AAAATCTAACCAACTTAAATTAAAAGAAACATATAAATATA-TATGTATA  149
       |||| ||| ||||||||| |||| ||||||||| |||||| ||||||||
seq2  TAAATTTAA-CAACTTAAA-TAAAGGAAACATAT-AATATATTATGTATA  146

seq1  TATGAATATTACCCTATATATGTCCATATATATA-TATATATGGATACTA  198
       ||||||||||||| ||||||||||||  ||||| |||||||||||||||
seq2  AATGAATATTACCCAATATATGTCCATTAATATATTATATATGGATACTA  196

seq1  CCCTAGA-CTGATC-TTCTTGAATGACACAGGAATG-AAACACTTCTGCT  245
      ||||||| |||||| ||||||||||||||||||||| |||||||||||||
seq2  CCCTAGACCTGATCTTTCTTGAATGACACAGGAATGAAAACACTTCTGCT  246

seq1  TTGG-TTTTATACTCACCCAGGAAGACCC-ATTCGTCAGGAATCTCCGGG  293
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGGTTTTTATACTCACCCAGGAAGACCCAATTCGTCAGGAATCTCCGGG  296

seq1  AAGAAAAAGAAAGAAGCTGTATATAAGTTGGATGACAGAAC-AAGGAGGC  342
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGAAAAAGAAAGAAGCTGTATATAAGTTGGATGACAGAACAAAGGAGGC  346

seq1  AAAGAAGCACCATGGTCTGCCATCAAACATGAGAGAACTGGAAGAGTAGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCACCATGGTCTGCCATCAAACATGAGAGAACTGGAAGAGTAGT  396

seq1  GACGTCCAAGCCC-AAAGCCTTGATGCTGAGGAGAGGCTGATGTCCAAGA  441
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GACGTCCAAGCCCAAAAGCCTTGATGCTGAGGAGAGGCTGATGTCCAAGA  446

seq1  GCAGTAGAGGATGGGTGCCCCAGCCTAGACTTTACCTTCCTTCT-AACAC  490
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCAGTAGAGGATGGGTGCCCCAGCCTAGACTTTACCTTCCTTCTAAACAC  496

seq1  TG-TTTTTCTGGGACAATGTGACACTGGTGAGAGTAGACCTTCCTTTTAG  539
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTCTGGGACAATGTGACACTGGTGAGAGTAGACCTTCCTTTTAG  546

seq1  AGTCTTCATTTCTCTTTTAGTGGCATCGTAATGAACATACCTACAAATAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCATTTCTCTTTTAGTGGCATCGTAATGAACATACCTACAAATAT  596

seq1  TTTAGTAGTATTCCTTAACTTACCCAAATTGATCCATGAAATTAATCAAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAGTATTCCTTAACTTACCCAAATTGATCCATGAAATTAATCAAC  646

seq1  AAATGGCTGAGCAAACAGTTCACCCAGTAGTTTGCTTGCTTTGAAGAAGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTGAGCAAACAGTTCACCCAGTAGTTTGCTTGCTTTGAAGAAGA  696

seq1  ACTTTTGTTCCCCTGAACCCACGTTTTAAAAAGCGAGTCATGCTGGTATG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTCCCCTGAACCCACGTTTTAAAAAGCGAGTCATGCTGGTATG  746

seq1  TGTTTGTAATCCTAATTTTGGGAAAACAGATCGGCAGATTGCTGAGGTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAATCCTAATTTTGGGAAAACAGATCGGCAGATTGCTGAGGTTT  796

seq1  GCTGTCCAGTCAGCCTAGTCAACTTGGTAGTTGGTAAATTCCACCCCAAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCAGTCAGCCTAGTCAACTTGGTAGTTGGTAAATTCCACCCCAAT  846

seq1  GAATGATACTGACTTGAAAACGTAAGACTGATGTGCCTGAAGAGCAACAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATACTGACTTGAAAACGTAAGACTGATGTGCCTGAAGAGCAACAT  896

seq1  TGGAAGGTTTCCCCCTAGCCTCAAGGTACACCTAAACACACACACACACA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTTTCCCCCTAGCCTCAAGGTACACCTAAACACACACACACACA  946

seq1  CACACACACACACACACACACAGAGAGAGAGATATGAATTC  980
      |||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAGAGAGAGAGATATGAATTC  987


| Home | SequenceCutter | Blast | Download |