BAC Information

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BAC

Clone NameB6Ng01-014F24
Chromosome17 (Build37)13 (Build37)
Map Location 68,530,470 - 68,531,37967,683,267 - 67,683,320
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtprm, Lrrc30, Lama1, Arhgap28
Downstream geneD930040M24Rik, EG622645, Epb4.1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014F24.bB6Ng01-014F24.g
ACCDH848942DH848943
length908833
definitionDH848942|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F24, 5' end.DH848943|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,530,470 - 68,531,379)(67,683,267 - 67,683,320)
sequence
gaattccactaaacattaaagaattaatgctggttccaaaagtgtcttta
aaacactgaacaggaagggtgcttttaaactcactctgagaccagccctc
ccctagcaactctagcagcaaagccgataacatcaccaaagcaaggaaaa
tggtgggtcaatatcctggatggatattgatacaaaagtattgaccagga
ttatacactataagactgtgaccgaataatggccttcccggattcaaaac
caaaatgagaagccatttccctttcattagaatggctatcattttgaaaa
gaaaatgtgttggtgagctttggcagttaggaagcatgcactgcccttgt
agaggactcgagttcggttcctagcacctgaattcagatgccccacaatc
acctgttactcaaacttcagagatagctgattcctctggtctttgtaggc
acctgcattcagatgttgggaccaactccatgtacatattataaaaaatg
aaaacagtctttcaaatgtgtcagtgatgtggagaaatgggattcaccat
gttctgtggtgttattgtaactgtcatggaattcagtatgacagtttcca
ccaaactaaagacagagatgtcacacaattcgagacctcctttctgaatc
tatattgagagtctgaagtatattcaagaagtgcccgctttctcagttca
ttgatggattgtacctggatttaatggctcctcattggtcttttggcaca
gcatgagtgacccttcagacactctgctaaaacagaaccaagtcataccc
aaagagaacagcatggatggtttcacccttagagtgaaacctagagtggc
cagatccctagggacagaggagtatgatgctggggtttggtgcagatgga
tgggaaat
gaattctgagggaaaaaaagagaatgcctgtttgaggttgttcattgggg
ctttccaagagacttcccaacatattgcctattgctattgctgttgatta
gcctctcaaggtacaagataagtacctattgctaaaggtaaaatgcattt
cagaaaccagactcagaattcctaggcaaatggatggacctggagggcat
catcctgagtgaggtaacccaatcacaaaggaactcgcacaatatgtact
cactgataagtggatattagcccagaaacttaggatacccaagatataag
atacaatttgctaaacgcatgaaattcaagaagaatgaagaccaaagtgt
ggacactttgccccttcttagaaatgggaacaaaacacccatggaaggag
ttacagagacaaaatttggagctgtgacgaaaggatggaccatctagtga
ttgccatatgcagggaaccatcccataatcagctcccaaacgctgacacc
attgcatacactagcaagattttgctgaaaggacccagatattgctgtct
cttgtgatactatgccggggcctagcaaacacagaagtggatgatcacag
tcagctattggatggatcacacggcccccaatggaggagctagagaaagt
acccaaggagctaaaggggaactgcaaccctataggtggaacaacaatat
gaactaaccagtaccccggagctcttgtctctagctgcatatgtatcaaa
agatggcctagtcggccatcactgtaaagagaggcccattggacttgcaa
actttataggccccggtacaggggtaccccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_68530470_68531379
seq2: B6Ng01-014F24.b_40_947

seq1  GAATTCCACTAAACATTAAAGAATTAATGCTGGTTCCAAAAGTGTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAAACATTAAAGAATTAATGCTGGTTCCAAAAGTGTCTTTA  50

seq1  AAACACTGAACAGGAAGGGTGCTTTTAAACTCACTCTGAGACCAGCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGAACAGGAAGGGTGCTTTTAAACTCACTCTGAGACCAGCCCTC  100

seq1  CCCTAGCAACTCTAGCAGCAAAGCCGATAACATCACCAAAGCAAGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCAACTCTAGCAGCAAAGCCGATAACATCACCAAAGCAAGGAAAA  150

seq1  TGGTGGGTCAATATCCTGGATGGATATTGATACAAAAGTATTGACCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTCAATATCCTGGATGGATATTGATACAAAAGTATTGACCAGGA  200

seq1  TTATACACTATAAGACTGTGACCGAATAATGGCCTTCCCGGATTCAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACTATAAGACTGTGACCGAATAATGGCCTTCCCGGATTCAAAAC  250

seq1  CAAAATGAGAAGCCATTTCCCTTTCATTAGAATGGCTATCATTTTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAGAAGCCATTTCCCTTTCATTAGAATGGCTATCATTTTGAAAA  300

seq1  GAAAATGTGTTGGTGAGCTTTGGCAGTTAGGAAGCATGCACTGCCCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGTTGGTGAGCTTTGGCAGTTAGGAAGCATGCACTGCCCTTGT  350

seq1  AGAGGACTCGAGTTCGGTTCCTAGCACCTGAATTCAGATGCCCCACAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTCGAGTTCGGTTCCTAGCACCTGAATTCAGATGCCCCACAATC  400

seq1  ACCTGTTACTCAAACTTCAGAGATAGCTGATTCCTCTGGTCTTTGTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTACTCAAACTTCAGAGATAGCTGATTCCTCTGGTCTTTGTAGGC  450

seq1  ACCTGCATTCAGATGTTGGGACCAACTCCATGTACATATTATAAAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATTCAGATGTTGGGACCAACTCCATGTACATATTATAAAAAATG  500

seq1  AAAACAGTCTTTCAAATGTGTCAGTGATGTGGAGAAATGGGATTCACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTCTTTCAAATGTGTCAGTGATGTGGAGAAATGGGATTCACCAT  550

seq1  GTTCTGTGGTGTTATTGTAACTGTCATGGAATTCAGTATGACAGTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGGTGTTATTGTAACTGTCATGGAATTCAGTATGACAGTTTCCA  600

seq1  CCAAACTAAAGACAGAGATGTCACACAATTCGAGACCTCCTTTCTGAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTAAAGACAGAGATGTCACACAATTCGAGACCTCCTTTCTGAATC  650

seq1  TATATTGAGAGTCTGAAGTATATTCAAGAAGTGCCGGCTTTCTCAGTTCA  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATATTGAGAGTCTGAAGTATATTCAAGAAGTGCCCGCTTTCTCAGTTCA  700

seq1  TTGATGGATTGTACCTGGATTTAATGGCTCCTCATTGGTCTTTTGGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGATTGTACCTGGATTTAATGGCTCCTCATTGGTCTTTTGGCACA  750

seq1  GCATGAGTGACCCTTCAGGACACTCTGCTAAAACAGAACCAAGTCATACC  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCATGAGTGACCCTTCA-GACACTCTGCTAAAACAGAACCAAGTCATACC  799

seq1  CAAAGAGAACAGCATGGATGGTTTCACCCTTAGAGTGAAACCTAGAGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAACAGCATGGATGGTTTCACCCTTAGAGTGAAACCTAGAGTGG  849

seq1  CCAGATTCCTAGGGACAGA-GAGTATGATGCTGGGGTTTGGTGCAGAATG  899
      |||||| |||||||||||| |||||||||||||||||||||||||| |||
seq2  CCAGATCCCTAGGGACAGAGGAGTATGATGCTGGGGTTTGGTGCAG-ATG  898

seq1  GAGGGGGAAAT  910
      ||  |||||||
seq2  GA-TGGGAAAT  908

seq1: chr13_67683267_67683320
seq2: B6Ng01-014F24.g_409_462 (reverse)

seq1  CTTCCATGGGTGTTTTGTTTCCTATTCTAAGAAGGGGCAAAGTGTCCACA  50
      ||||||||||||||||||| ||  ||||||||||||||||||||||||||
seq2  CTTCCATGGGTGTTTTGTTCCCATTTCTAAGAAGGGGCAAAGTGTCCACA  50

seq1  CTTT  54
      ||||
seq2  CTTT  54