BAC Information

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BAC

Clone NameB6Ng01-015L08
Chromosome13 (Build37)
Map Location 94,967,590 - 95,058,522
singlet/doubletdoublet
Overlap geneScamp1
Upstream geneLOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2
Downstream geneLOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41, Pde8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015L08.bB6Ng01-015L08.g
ACCDH849893DH849894
length1,1411,088
definitionDH849893|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L08, 5' end.DH849894|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,967,590 - 94,968,753)(95,057,437 - 95,058,522)
sequence
gaattcagaactggagagaagccaccctggctggacagaagccagaggat
ctggctcttgctcgtcctcagaccttcaccacccttactcacaggtacct
tgttgtaatttcctaatcttcaacagaaatggcgacaattagcaagtacg
tcatagatttgatacaaggactaaggaacatatagaaagtcttagtgtaa
tctcttctaagtcctcaacagcaagaaaacagaatcctgtctttccaaat
aaatacgagtttcttttattttatatatatatatatatattttttttttt
tttggatggggtctctaggcaaccctggctgttctggaacttgctatgta
gaccaagctagcactgaactcacagtgatccacctgcctctgcctcctca
gtgctgggattttagaagccacactttgtgatggataatacaacctgttg
tcaaaagtgatcaagttttacttactataaagttagcggcctggctcctt
gaggccaccatttctttgcatctcattatcatagatcatccagttaaacg
tctttacctcacagctcgctggtggtgggaggttcagttgagcaaatcca
cagacaggggaaaccagaatgcttacacacaaaacctcttgcttacttac
ccagtcttacaggatgtaagaatttggaaaagggaactcctagtgctggg
ctaggacttggaatgaatttataaattgataaattctttctagagagcca
aaagttaacattttattttattttttttttagcacacacataactttcaa
atcagcacatttttcctaacaaaaaccttgagccccaattatttagcaac
aatattatttgctggcaaatcatttctaattaaaaaaaaacttgaaaatc
agaatcttaagaatatagaatttgatgatcgctgcatgtagtcagaaata
taaatataaccagcgtttttatattttttataatataaatatacagcgtt
ggctggtggttcttcgcatgcacattggctgcccataattcatgtggtag
agtctcgaaacatctgcactgagaagacatagcggctcacacttgcactg
gcatcactctgcttgatggcatccagtcagatacttcgaag
gaattcatctgatgggaaaaggggagcaaggcccgaatcgtcctctgact
tccacttgtgcacgtgcttccggagagcaatgggcggtggggatggcata
ctctttcattctttctcttatgccaggaggtctgagaacagctttctgga
atatgggttctggggattggactcaggttgctaggcttgtgtggcaagta
cctttatctgctgaggtgtctcgatggcttccacaggccctcctcttgta
tctggtaaactgtgttatccacaacatctagaacactgcttacctctcag
tagggttcaggaaatacttgttaaactgggtgagtggtgcaagccagtga
tcctagcacttagagggctcaggaacccaagccaccccttcccaaaagaa
agaaaggttaattggtgatgggctagccttggaaactcagatgggaaagg
tgctatgacccaggtcacaaatagctgagaccccaaaccaattctgagtc
attttttggcctgcccaattcagaaggtagagcctagaaaaagcagcagc
ctgcttcccatctcccgattcacttcctcccctactaatgaccagactaa
agtgcatccctaaatgactggacctgtcctgattcgaaagggtcagggtc
tttcctggacctgtaatgtctggtttcagaacaactaatgaatgagtgag
gcccttcacagaccacgccacgagtcttgcagttttcaaaataatgctgg
agaaacagttaatgtggagggatttccattaggccatgctttcaagcccc
tcccccactctaccatcaccgttcaaataaaaagtgacaatatttctgtg
tcatggtgaagaagccctaggcagtctccttgggcaagtacacagcttac
ttagtaactttgcaccatgtcccagagaggaaaacaggcttggggacatg
ggtcataaccctgtttctccagtgtcagacagcaagagcttaagaaggtt
ggcaagactgagggaataggtgtggcatagagtgtacgtattatgtttga
agaataccaagttggtaggaaagacaaaaccaccccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_94967590_94968753
seq2: B6Ng01-015L08.b_46_1186

seq1  GAATTCAGAACTGGAGAGAAGCCACCCTGGCTGGACAGAAGCCAGAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTGGAGAGAAGCCACCCTGGCTGGACAGAAGCCAGAGGAT  50

seq1  CTGGCTCTTGCTCGTCCTCAGACCTTCACCACCCTTACTCACAGGTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTTGCTCGTCCTCAGACCTTCACCACCCTTACTCACAGGTACCT  100

seq1  TGTTGTAATTTCCTAATCTTCAACAGAAATGGCGACAATTAGCAAGTACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAATTTCCTAATCTTCAACAGAAATGGCGACAATTAGCAAGTACG  150

seq1  TCATAGATTTGATACAAGGACTAAGGAACATATAGAAAGTCTTAGTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATTTGATACAAGGACTAAGGAACATATAGAAAGTCTTAGTGTAA  200

seq1  TCTCTTCTAAGTCCTCAACAGCAAGAAAACAGAATCCTGTCTTTCCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTAAGTCCTCAACAGCAAGAAAACAGAATCCTGTCTTTCCAAAT  250

seq1  AAATACGAGTTTCTTTTATTTTATATATATATATATATATTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACGAGTTTCTTTTATTTTATATATATATATATATATTTTTTTTTTT  300

seq1  TTTGGATGGGGTCTCTAGGCAACCCTGGCTGTTCTGGAACTTGCTATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGGGGTCTCTAGGCAACCCTGGCTGTTCTGGAACTTGCTATGTA  350

seq1  GACCAAGCTAGCACTGAACTCACAGTGATCCACCTGCCTCTGCCTCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGCTAGCACTGAACTCACAGTGATCCACCTGCCTCTGCCTCCTCA  400

seq1  GTGCTGGGATTTTAGAAGCCACACTTTGTGATGGATAATACAACCTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTTTAGAAGCCACACTTTGTGATGGATAATACAACCTGTTG  450

seq1  TCAAAAGTGATCAAGTTTTACTTACTATAAAGTTAGCGGCCTGGCTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTGATCAAGTTTTACTTACTATAAAGTTAGCGGCCTGGCTCCTT  500

seq1  GAGGCCACCATTTCTTTGCATCTCATTATCATAGATCATCCAGTTAAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACCATTTCTTTGCATCTCATTATCATAGATCATCCAGTTAAACG  550

seq1  TCTTTACCTCACAGCTCGCTGGTGGTGGGAGGTTCAGTTGAGCAAATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACCTCACAGCTCGCTGGTGGTGGGAGGTTCAGTTGAGCAAATCCA  600

seq1  CAGACAGGGGAAACCAGAATGCTTACACACAAAACCTCTTGCTTACTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGGAAACCAGAATGCTTACACACAAAACCTCTTGCTTACTTAC  650

seq1  CCAGTCTTACAGGATGTAAGAATTTGGAAAAGGGAACTCCTAGTGCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTACAGGATGTAAGAATTTGGAAAAGGGAACTCCTAGTGCTGGG  700

seq1  CTAGGACTTGGAATGAATTTATAAATTGATAAATTCTTTCTAGAGAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTTGGAATGAATTTATAAATTGATAAATTCTTTCTAGAGAGCCA  750

seq1  AAAGTTAACATTTTATTTTATTTTTTTTTTAGCACACACATAACTTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAACATTTTATTTTATTTTTTTTTTAGCACACACATAACTTTCAA  800

seq1  ATCAGCACATTTTTCCTAACAAAAACCTTGAGCCCCAA-TATTTAGCAAC  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCAGCACATTTTTCCTAACAAAAACCTTGAGCCCCAATTATTTAGCAAC  850

seq1  AATATTATTTGCTGGCAAATCATTTCTAATTAAAAAAAAAACTTGAAAAT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATATTATTTGCTGGCAAATCATTTCTAATT-AAAAAAAAACTTGAAAAT  899

seq1  CAGAATC-TAAGAATATAAGATTTGATGATCGCTGCATGTAGTCAGAAAT  948
      ||||||| ||||||||||  ||||||||||||||||||||||||||||||
seq2  CAGAATCTTAAGAATATAGAATTTGATGATCGCTGCATGTAGTCAGAAAT  949

seq1  ATAAATATAACCAGCGTTTTTATATTTATATAAATATAAATATAACCAGC  998
      ||||||||||||||||||||||||||| |   ||||||||||||  ||||
seq2  ATAAATATAACCAGCGTTTTTATATTTTTTATAATATAAATATA--CAGC  997

seq1  GTTGGCTGGTGGTTCCTTCGCCATTGCACAATATGGCTGCCCATACATTC  1048
      |||||||||||||| ||||||   ||||||   |||||||||||| ||||
seq2  GTTGGCTGGTGGTT-CTTCGC--ATGCACA--TTGGCTGCCCATA-ATTC  1041

seq1  AGTGGTGGTAGAGTCCTTCTGAACACATCTGCACTGAGAAGACATAAGGC  1098
      |   |||||||||||  || ||| ||||||||||||||||||||||  ||
seq2  A--TGTGGTAGAGTC--TC-GAA-ACATCTGCACTGAGAAGACATA--GC  1083

seq1  GGGCTCACCACTGCAGTGTGCATCCACTCTGGCTTGATGGCATCCAGTTC  1148
       |||||||   |||| || |||| |||||| |||||||||||||||||  
seq2  -GGCTCACACTTGCACTG-GCAT-CACTCT-GCTTGATGGCATCCAGT--  1127

seq1  CAGGATACTTCAGAAG  1164
      || |||||||| ||||
seq2  CA-GATACTTC-GAAG  1141

seq1: chr13_95057437_95058522
seq2: B6Ng01-015L08.g_67_1154 (reverse)

seq1  GTGGTGGTGGTTTTGTCTTCTCCTACCAACTTTGTATTC-TCAACATTAT  49
      |||| |||||||||||||| |||||||||||| |||||| ||||   || 
seq2  GTGG-GGTGGTTTTGTCTT-TCCTACCAACTTGGTATTCTTCAAACATAA  48

seq1  TACGTACACTCTAATGCCACACCTA-TCCCTCAGTCTTGCCAACCTTCTT  98
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TACGTACACTCT-ATGCCACACCTATTCCCTCAGTCTTGCCAACCTTCTT  97

seq1  AAGCTCTTGCTGTCCTGACACTGGAGAAACAGGG-TATGACCCATGTCCC  147
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  AAGCTCTTGCTGT-CTGACACTGGAGAAACAGGGTTATGACCCATGTCCC  146

seq1  C-AGCCTGTTTTCCTCTCTGGGACAT-GTGCAAAGTTACTAAGTAAGCTG  195
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAGCCTGTTTTCCTCTCTGGGACATGGTGCAAAGTTACTAAGTAAGCTG  196

seq1  TGTACTTG-CCAAGGAGACTGCCTAGGGCTTCTTCACCATGACACAGAAA  244
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGCCCAAGGAGACTGCCTAGGGCTTCTTCACCATGACACAGAAA  246

seq1  TATTGTCACTTTTTATTTGAACGGTGATGGTAGAGTGGGGGAGGGGCTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCACTTTTTATTTGAACGGTGATGGTAGAGTGGGGGAGGGGCTTG  296

seq1  AAAGCATGGCCTAATGGAAATCCCTCCACATTAACTGTTTCTCCAGCATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGGCCTAATGGAAATCCCTCCACATTAACTGTTTCTCCAGCATT  346

seq1  ATTTTGAAAACTGCAAGACTCGTGGCGTGGTCTGTGAAGGGCCTCACTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAAACTGCAAGACTCGTGGCGTGGTCTGTGAAGGGCCTCACTCA  396

seq1  TTCATTAGTTGTTCTGAAACCAGACATTACAGGTCCAGGAAAGACCCTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGTTGTTCTGAAACCAGACATTACAGGTCCAGGAAAGACCCTGA  446

seq1  CCCTTTCGAATCAGGACAGGTCCAGTCATTTAGGGATGCACTTTAGTCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCGAATCAGGACAGGTCCAGTCATTTAGGGATGCACTTTAGTCTG  496

seq1  GTCATTAGTAGGGGAGGAAGTGAATCGGGAGATGGGAAGCAGGCTGCTGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAGTAGGGGAGGAAGTGAATCGGGAGATGGGAAGCAGGCTGCTGC  546

seq1  TTTTTCTAGGCTCTACCTTCTGAATTGGGCAGGCCAAAAAATGACTCAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGGCTCTACCTTCTGAATTGGGCAGGCCAAAAAATGACTCAGA  596

seq1  ATTGGTTTGGGGTCTCAGCTATTTGTGACCTGGGTCATAGCACCTTTCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTGGGGTCTCAGCTATTTGTGACCTGGGTCATAGCACCTTTCCC  646

seq1  ATCTGAGTTTCCAAGGCTAGCCCATCACCAATTAACCTTTCTTTCTTTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGTTTCCAAGGCTAGCCCATCACCAATTAACCTTTCTTTCTTTTG  696

seq1  GGAAGGGGTGGCTTGGGTTCCTGAGCCCTCTAAGTGCTAGGATCACTGGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGTGGCTTGGGTTCCTGAGCCCTCTAAGTGCTAGGATCACTGGC  746

seq1  TTGCACCACTCACCCAGTTTAACAAGTATTTCCTGAACCCTACTGAGAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCACTCACCCAGTTTAACAAGTATTTCCTGAACCCTACTGAGAGG  796

seq1  TAAGCAGTGTTCTAGATGTTGTGGATAACACAGTTTACCAGATACAAGAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGTGTTCTAGATGTTGTGGATAACACAGTTTACCAGATACAAGAG  846

seq1  GAGGGCCTGTGGAAGCCATCGAGACACCTCAGCAGATAAAGGTACTTGCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCTGTGGAAGCCATCGAGACACCTCAGCAGATAAAGGTACTTGCC  896

seq1  ACACAAGCCTAGCAACCTGAGTCCAATCCCCAGAACCCATATTCCAGAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCCTAGCAACCTGAGTCCAATCCCCAGAACCCATATTCCAGAAA  946

seq1  GCTGTTCTCAGACCTCCTGGCATAAGAGAAAGAATGAAAGAGTATGCCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTCAGACCTCCTGGCATAAGAGAAAGAATGAAAGAGTATGCCAT  996

seq1  CCCCACCGCCCATTGCTCTCCGGAAGCACGTGCACAAGTGGAAGTCAGAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCGCCCATTGCTCTCCGGAAGCACGTGCACAAGTGGAAGTCAGAG  1046

seq1  GACGATTCGGGCCTTGCTCCCCTTTTCCCATCAGATGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATTCGGGCCTTGCTCCCCTTTTCCCATCAGATGAATTC  1088