BAC Information

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BAC

Clone NameB6Ng01-015N20
Chromosome13 (Build37)
Map Location 89,136,903 - 89,255,970
singlet/doubletdoublet
Overlap geneEdil3
Upstream geneLOC667230, EG435375
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015N20.bB6Ng01-015N20.g
ACCDH850009DH850010
length1,097709
definitionDH850009|Mus musculus domesticus DNA, BAC clone: B6Ng01-015N20, 5' end.DH850010|Mus musculus domesticus DNA, BAC clone: B6Ng01-015N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,254,877 - 89,255,970)(89,136,903 - 89,137,611)
sequence
gaattcccaggtggtacagtctctgggtggcctttcctttagtctctgct
ctacacttaatctccatatttactcctgtgagtatttttgttctccttct
aagaaggactgaagtatccaacttttgtcttgcatacttttgtacaagct
actcagtttgtacaatatcaattgtatgtatttatatatgtataaatatg
cgatccactcatttctatgtcacttgtgtttatacatatgcatatataca
tatcctgctcagtctacataatgtctattttatgtatataaatatatgtg
tgtattttttaaaagatttgtatttatttattgtatgtaagtacactgta
actgtgtccagacactccagaggagggcatcagatcttgttactgatggt
tgtgagccatcatgtgttagctgggatttgaactcaggaccttcagaaga
gcagccagtgctcttaactgctgggccatctctccagccctatgtgtgta
ttataaatattatctgtatgaatatatatgtgtgtatatatatatttttt
ctgctcagtctgtgtaatgtctgttgtatgtatgtatatgtctatctatc
tatctatctatctatctatctatctacacaagtctgtatttctatataca
tacacaagcttctcaaactgtgtaatgtcacttgtatatgtgtatctgca
tctctctgtgtttaacatagatacacatatacaaggaaatacacatattc
aggaaattttcacctgtgatttttttcattaaaaagaaaattgcatgggt
ttcattctcccaaatatcccattttactttctgaacagaatgatgaacca
tttgtgttaaataataagtttaaaatgtaaaacagtaataagaattattt
gtaatattaagcagccatattttgcaaaagtctgaaatttcaagtatgag
actggcacctgaggctcaagggttgttcacagctgtgtacacaaaagaga
tcttggagaagcagcccaccaatattctagagtaaatattgcctccaatc
tcgctagggttatattcattataatcgtggatttattctccagcaac
gaattcctaattttttctagttttatttcaaattgattttatctagtgat
tttatttcttttaaattctactatcatgtattacattattttattatttc
attcaattgtttctttgtgtttcagtcttcactaagagttgtagtcatat
ccacctttaatgtctttgaacttatttgtaattgtagttcagtccttgtc
ttgtgattcagctacattgtatttcttaaggtcaagggtaaaatggttat
ttgattctggtaaaggcatattatcttgactgttcagttttgtgcttttg
ttctgtagtccagaaatctggagtttttataaatgcatttattgtaggtg
ttaagatcagggtttgttcttgttgggtggatttgttatttatgattgcc
atctctgtatctgaggaagcatgatgagtgagcagccactagtagggagt
acttccacaggtactttgtcacagaaagaaatagaaatgggctaggagga
aagtttgataggggttgtataggaaagaactaaatagaatggttacacac
caagaaccaaagttctcagggagtagaggagttgtggaaagagagttcaa
gtaggctctagcaagacaaaaaaggaagtcaggagagataaagatggaat
agctaaggaaactctggatcctcattaaaatgatgggatgaaaggaaggt
tgggtggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89254877_89255970
seq2: B6Ng01-015N20.b_44_1140 (reverse)

seq1  GTTGCTGGAGTATATAATCACAGATTATAATAGAATATAACCATAGC-AG  49
      |||||||||| ||| ||||   ||||||||| |||||||||| |||| ||
seq2  GTTGCTGGAGAATA-AATCCACGATTATAAT-GAATATAACCCTAGCGAG  48

seq1  ATTGGAGCCATTAATTTACTCTAG-ATATTTGGTGGCTGCTTCTCCAGAT  98
      ||||||| || | ||||||||||| ||||| |  |||||||||||||   
seq2  ATTGGAGGCAAT-ATTTACTCTAGAATATTGGTGGGCTGCTTCTCCAAGA  97

seq1  TCTCTTTTGTGTTACACAGCTGTGCAACAA-CCTTGAGACTCA-GTGCCA  146
      ||||||||||| |||||||||||| ||||| ||||||| |||| ||||||
seq2  TCTCTTTTGTG-TACACAGCTGTG-AACAACCCTTGAGCCTCAGGTGCCA  145

seq1  GTCTTCATAC-TGAAATTTCAGACTTTTGCAAAATATGGCTGCTTAATAT  195
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTC-TCATACTTGAAATTTCAGACTTTTGCAAAATATGGCTGCTTAATAT  194

seq1  TAC-AATTATTCTTA-TACTGTTTTACATTTTTAACTTATTATTTAACAC  243
      ||| ||| ||||||| |||||||||||||||| |||||||||||||||||
seq2  TACAAATAATTCTTATTACTGTTTTACATTTTAAACTTATTATTTAACAC  244

seq1  AAATGGTTCATCATTCTGTTCAGAAAGTAAAATGGGATA-TTGGGAGAAT  292
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATGGTTCATCATTCTGTTCAGAAAGTAAAATGGGATATTTGGGAGAAT  294

seq1  GAAACCCATGCAATTTTCTTTTTGATGAAAAAAATCACAGGTGAAAATTT  342
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAACCCATGCAATTTTCTTTTTAATGAAAAAAATCACAGGTGAAAATTT  344

seq1  CCTGAATATGTGTATTTCCTTGTATATGTGTATCTATGTT-AACACAGAG  391
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTGAATATGTGTATTTCCTTGTATATGTGTATCTATGTTAAACACAGAG  394

seq1  AGATGCAGATACACATATACAAGTGACATTACACAGTTTGAGAAGCTTGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGATACACATATACAAGTGACATTACACAGTTTGAGAAGCTTGT  444

seq1  GTATGTATATAGAAATACAGACTTGTGTAGATAGATAGATAGATAGATAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATATAGAAATACAGACTTGTGTAGATAGATAGATAGATAGATAG  494

seq1  ATAGATAGATAGACATATACATACATACAACAGACATTACACAGACTGAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGACATATACATACATACAACAGACATTACACAGACTGAG  544

seq1  CAGAAAAAATATATATATACACACATATATATTCATACAGATAATATTTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAATATATATATACACACATATATATTCATACAGATAATATTTA  594

seq1  TAATACACACATAGGGCTGGAGAGATGGCCCAGCAGTTAAGAGCACTGGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACACACATAGGGCTGGAGAGATGGCCCAGCAGTTAAGAGCACTGGC  644

seq1  TGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCTAACACATGATGGCTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCTAACACATGATGGCTC  694

seq1  ACAACCATCAGTAACAAGATCTGATGCCCTCCTCTGGAGTGTCTGGACAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCAGTAACAAGATCTGATGCCCTCCTCTGGAGTGTCTGGACAC  744

seq1  AGTTACAGTGTACTTACATACAATAAATAAATACAAATCTTTTAAAAAAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGTGTACTTACATACAATAAATAAATACAAATCTTTTAAAAAAT  794

seq1  ACACACATATATTTATATACATAAAATAGACATTATGTAGACTGAGCAGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATATATTTATATACATAAAATAGACATTATGTAGACTGAGCAGG  844

seq1  ATATGTATATATGCATATGTATAAACACAAGTGACATAGAAATGAGTGGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATATGCATATGTATAAACACAAGTGACATAGAAATGAGTGGA  894

seq1  TCGCATATTTATACATATATAAATACATACAATTGATATTGTACAAACTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATATTTATACATATATAAATACATACAATTGATATTGTACAAACTG  944

seq1  AGTAGCTTGTACAAAAGTATGCAAGACAAAAGTTGGATACTTCAGTCCTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTGTACAAAAGTATGCAAGACAAAAGTTGGATACTTCAGTCCTT  994

seq1  CTTAGAAGGAGAACAAAAATACTCACAGGAGTAAATATGGAGATTAAGTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGGAGAACAAAAATACTCACAGGAGTAAATATGGAGATTAAGTG  1044

seq1  TAGAGCAGAGACTAAAGGAAAGGCCACCCAGAGACTGTACCACCTGGGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGAGACTAAAGGAAAGGCCACCCAGAGACTGTACCACCTGGGAA  1094

seq1  TTC  1094
      |||
seq2  TTC  1097

seq1: chr13_89136903_89137611
seq2: B6Ng01-015N20.g_70_778

seq1  GAATTCCTAATTTTTTCTAGTTTTATTTCAAATTGATTTTATCTAGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATTTTTTCTAGTTTTATTTCAAATTGATTTTATCTAGTGAT  50

seq1  TTTATTTCTTTTAAATTCTACTATCATGTATTACATTATTTTATTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTTTTAAATTCTACTATCATGTATTACATTATTTTATTATTTC  100

seq1  ATTCAATTGTTTCTTTGTGTTTCAGTCTTCACTAAGAGTTGTAGTCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTGTTTCTTTGTGTTTCAGTCTTCACTAAGAGTTGTAGTCATAT  150

seq1  CCACCTTTAATGTCTTTGAACTTATTTGTAATTGTAGTTCAGTCCTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTAATGTCTTTGAACTTATTTGTAATTGTAGTTCAGTCCTTGTC  200

seq1  TTGTGATTCAGCTACATTGTATTTCTTAAGGTCAAGGGTAAAATGGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTCAGCTACATTGTATTTCTTAAGGTCAAGGGTAAAATGGTTAT  250

seq1  TTGATTCTGGTAAAGGCATATTATCTTGACTGTTCAGTTTTGTGCTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTGGTAAAGGCATATTATCTTGACTGTTCAGTTTTGTGCTTTTG  300

seq1  TTCTGTAGTCCAGAAATCTGGAGTTTTTATAAATGCATTTATTGTAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGTCCAGAAATCTGGAGTTTTTATAAATGCATTTATTGTAGGTG  350

seq1  TTAAGATCAGGGTTTGTTCTTGTTGGGTGGATTTGTTATTTATGATTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATCAGGGTTTGTTCTTGTTGGGTGGATTTGTTATTTATGATTGCC  400

seq1  ATCTCTGTATCTGAGGAAGCATGATGAGTGAGCAGCCACTAGTAGGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTATCTGAGGAAGCATGATGAGTGAGCAGCCACTAGTAGGGAGT  450

seq1  ACTTCCACAGGTACTTTGTCACAGAAAGAAATAGAAATGGGCTAGGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACAGGTACTTTGTCACAGAAAGAAATAGAAATGGGCTAGGAGGA  500

seq1  AAGTTTGATAGGGGTTGTATAGGAAAGAACTAAATAGAATGGTTACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGATAGGGGTTGTATAGGAAAGAACTAAATAGAATGGTTACACAC  550

seq1  CAAGAACCAAAGTTCTCAGGGAGTAGAGGAGTTGTGGAAAGAGAGTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCAAAGTTCTCAGGGAGTAGAGGAGTTGTGGAAAGAGAGTTCAA  600

seq1  GTAGGCTCTAGCAAGACAAAAAAGGAAGTCAGGAGAGATAAAGATGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTCTAGCAAGACAAAAAAGGAAGTCAGGAGAGATAAAGATGGAAT  650

seq1  AGCTAAGGAAACTCTGGATCCTCATCAAAATGATGGGATG-AAGGAAGGT  699
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  AGCTAAGGAAACTCTGGATCCTCATTAAAATGATGGGATGAAAGGAAGGT  700

seq1  ATGGGTGGAG  709
       |||||||||
seq2  -TGGGTGGAG  709