BAC Information

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BAC

Clone NameB6Ng01-017B10
Chromosome13 (Build37)
Map Location 117,862,027 - 117,992,298
singlet/doubletdoublet
Overlap geneLOC623312
Upstream geneEG623174, Isl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288
Downstream geneEmb, EG623365, LOC382807, Hcn1, LOC100041695, LOC674926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017B10.bB6Ng01-017B10.g
ACCDH850868DH850869
length1,100490
definitionDH850868|Mus musculus domesticus DNA, BAC clone: B6Ng01-017B10, 5' end.DH850869|Mus musculus domesticus DNA, BAC clone: B6Ng01-017B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,862,027 - 117,863,131)(117,991,803 - 117,992,298)
sequence
gaattctccaaataacgtaaccatttgaaaggatgctatcagcacatatg
gctataggagactccagaatacaggaagatgactgctctatcacagacat
cagaatgaagaaaaatgcattattacattcattggggacactgtggagat
gtctatctgctctatggaaccagcacaactccagggtcagaactaactat
cagtatgagcaattgcataagactgcaaagaaagaagttgctatgggacc
tgacaattgaaacagtcatttctcttccaactctttcctatctctccttc
tctatgtgcaggatgtctgcttagcatcccagggaagtggaacaaatgac
cagaagaattagatcattgggcgcttattccctgaggatctccaggttct
tgcatatagagatgccaagctctgtctaaactacaattctttgcttctat
aaatctgatttaatttatgtatagacttacattgtaaaatctactgttac
tattttcacagtagtaacccagtagaaaaacagacctaccacatctgatt
tatatctctgggtgcctatttccctatggggagcagccaaagagtttgcc
aatggtcttcatgagtggcacatgtcagggaaacattgtgtttgggtgaa
agttaaggagattctattagacattttatttttatgattctggctgggga
tgaaacctaggtcctcatacatgctacccaaatctgtgctattgttgagg
aattcaagataccctagagaaaagaccaccgctgacacaattttggatta
taattagttcaatttactgaagctactaggaagacaataatctttaagcc
gaattagagactgctacaggcagaggggtaagggaaagatttttaaaact
gaaaaccacaaaaagaccttgagtaccagtgaccagagctgtttcactct
gccagattagatatcagacaacttcaaaatgactctgaatgtccatataa
gcaggatactgaagctcccccccccccaccacaaaagcagtcatattatt
agtagatgatcatggctggtgcattttttggggtcaagaataaacttccc

tctgtttcctgtgtgtccacggtgaccttctctcctgcccactcatcctt
aatatctttacaagaagaagaagaaaacaagtgggatgagtcagtgcctg
aagctgctggccaccggggctgacaacctgggttccatgccaggacccac
gtgggaaagagagaaccaacttctacaagttgtgctttgatctaaacacg
tgctatacacacacgagcgcgctcgcacacacacacacacacacacacac
acacacacacacacacacacaccaaataaaatgagtaagttgaccacacc
aaataaaatgaaaattagaaggaagtggggggtcggggaggtgggggcgc
ggggagggacaccaggaaggatgggaaatcatggagactttcccgaaaca
tgaaccgggagaaggtcgccttctgctggtcaaagagagagatagcaggt
gaaagcaaacaccttgattgtggattttcaggtcccagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_117862027_117863131
seq2: B6Ng01-017B10.b_45_1144

seq1  GAATTCTCCAAATAACGTAACCATTTGAAAGGATGCTATCAGCACATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAATAACGTAACCATTTGAAAGGATGCTATCAGCACATATG  50

seq1  GCTATAGGAGACTCCAGAATACAGGAAGATGACTGCTCTATCACAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGGAGACTCCAGAATACAGGAAGATGACTGCTCTATCACAGACAT  100

seq1  CAGAATGAAGAAAAATGCATTATTACATTCATTGGGGACACTGTGGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAAGAAAAATGCATTATTACATTCATTGGGGACACTGTGGAGAT  150

seq1  GTCTATCTGCTCTATGGAACCAGCACAACTCCAGGGTCAGAACTAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCTGCTCTATGGAACCAGCACAACTCCAGGGTCAGAACTAACTAT  200

seq1  CAGTATGAGCAATTGCATAAGACTGCAAAGAAAGAAGTTGCTATGGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGAGCAATTGCATAAGACTGCAAAGAAAGAAGTTGCTATGGGACC  250

seq1  TGACAATTGAAACAGTCATTTCTCTTCCAACTCTTTCCTATCTCTCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATTGAAACAGTCATTTCTCTTCCAACTCTTTCCTATCTCTCCTTC  300

seq1  TCTATGTGCAGGATGTCTGCTTAGCATCCCAGGGAAGTGGAACAAATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGCAGGATGTCTGCTTAGCATCCCAGGGAAGTGGAACAAATGAC  350

seq1  CAGAAGAATTAGATCATTGGGCGCTTATTCCCTGAGGATCTCCAGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAATTAGATCATTGGGCGCTTATTCCCTGAGGATCTCCAGGTTCT  400

seq1  TGCATATAGAGATGCCAAGCTCTGTCTAAACTACAATTCTTTGCTTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATAGAGATGCCAAGCTCTGTCTAAACTACAATTCTTTGCTTCTAT  450

seq1  AAATCTGATTTAATTTATGTATAGACTTACATTGTAAAATCTACTGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGATTTAATTTATGTATAGACTTACATTGTAAAATCTACTGTTAC  500

seq1  TATTTTCACAGTAGTAACCCAGTAGAAAAACAGACCTACCACATCTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCACAGTAGTAACCCAGTAGAAAAACAGACCTACCACATCTGATT  550

seq1  TATATCTCTGGGTGCCTATTTCCCTATGGGGAGCAGCCAAAGAGTTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTCTGGGTGCCTATTTCCCTATGGGGAGCAGCCAAAGAGTTTGCC  600

seq1  AATGGTCTTCATGAGTGGCACATGTCAGGGAAACATTGTGTTTGGGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTTCATGAGTGGCACATGTCAGGGAAACATTGTGTTTGGGTGAA  650

seq1  AGTTAAGGAGATTCTATTAGACATTTTATTTTTATGATTCTGGCTGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGGAGATTCTATTAGACATTTTATTTTTATGATTCTGGCTGGGGA  700

seq1  TGAAACCTAGGTCCTCATACATGCTACCCAAATCTGTGCTATTGTTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTAGGTCCTCATACATGCTACCCAAATCTGTGCTATTGTTGAGG  750

seq1  AATTCAAGATACCCTAGAGAAAAGACCACCGCTGACACAA-TTTGGATTA  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATTCAAGATACCCTAGAGAAAAGACCACCGCTGACACAATTTTGGATTA  800

seq1  TAATTAGTTCAATTTACTGAAGCTACTAGGAAGACAATAATCTTTAAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTTCAATTTACTGAAGCTACTAGGAAGACAATAATCTTTAAGCC  850

seq1  GAATTAGAGACTGCTACAGGCAGAGGGGTAAGGGAAAGATTTTTAAAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGAGACTGCTACAGGCAGAGGGGTAAGGGAAAGATTTTTAAAACT  900

seq1  GAAAACCACAAAAAAGACCTTGAGTACCAGTGAACCAAGAGCTGTTTCAC  949
      ||||||||| |||||||||||||||||||||||  | |||||||||||||
seq2  GAAAACCAC-AAAAAGACCTTGAGTACCAGTGA--CCAGAGCTGTTTCAC  947

seq1  TCTGCCAAGATAAGATAGTCAAGACAACTTCAAAATAGACCTTGAATGTC  999
      |||||| |||| ||||| || ||||||||||||||| |||  ||||||||
seq2  TCTGCC-AGATTAGATA-TC-AGACAACTTCAAAAT-GACTCTGAATGTC  993

seq1  CATATAAGCAGGATACTGAAGCT-CCCCCCCCCCACCACCAAAAGCAGTC  1048
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  CATATAAGCAGGATACTGAAGCTCCCCCCCCCCCACCA-CAAAAGCAGTC  1042

seq1  ATATTATAAGTAGATGATCATGGCT-GTGCATTTTT--GGGTCAAGGAAT  1095
      ||||||| ||||||||||||||||| ||||||||||  ||||||| ||||
seq2  ATATTATTAGTAGATGATCATGGCTGGTGCATTTTTTGGGGTCAA-GAAT  1091

seq1  AGAACTTCCC  1105
      | ||||||||
seq2  A-AACTTCCC  1100

seq1: chr13_117991803_117992298
seq2: B6Ng01-017B10.g_68_563 (reverse)

seq1  ATCTGGGACCTGAAAATCCACAATCAAGGTGTTTGCTTTCACCTGCTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGACCTGAAAATCCACAATCAAGGTGTTTGCTTTCACCTGCTATC  50

seq1  TCTCTCTTTGACCAGCAGATGGCGACCTTCTCCCGGTTGCTGTTTCGGGT  100
      ||||||||||||||||||| ||||||||||||||||||  ||||||||| 
seq2  TCTCTCTTTGACCAGCAGAAGGCGACCTTCTCCCGGTTCATGTTTCGGGA  100

seq1  TTGTCTCCATGATTTCCCATCCTTCCTGGTGTCCCTCCCCGCGCCCCCAC  150
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCATGATTTCCCATCCTTCCTGGTGTCCCTCCCCGCGCCCCCAC  150

seq1  CTCCCCGACCCCCCACTTCCTTCTAATTTTCATTTTATTTGGTGTGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCGACCCCCCACTTCCTTCTAATTTTCATTTTATTTGGTGTGGTCA  200

seq1  ACTTACTCATTTTATTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTCATTTTATTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250

seq1  GTGTGTGTGTGTGTGCGAGCGCGCTCGTGTGTGTATAGCACGTGTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGCGAGCGCGCTCGTGTGTGTATAGCACGTGTTTAGA  300

seq1  TCAAAGCACAACTTGTAGAAGTTGGTTCTCTCTTTCCCACGTGGGTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCACAACTTGTAGAAGTTGGTTCTCTCTTTCCCACGTGGGTCCTG  350

seq1  GCATGGAACCCAGGTTGTCAGCCCCGGTGGCCAGCAGCTTCAGGCACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAACCCAGGTTGTCAGCCCCGGTGGCCAGCAGCTTCAGGCACTGA  400

seq1  CTCATCCCACTTGTTTTCTTCTTCTTCTTGTAAAGATATTAAGGATGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCACTTGTTTTCTTCTTCTTCTTGTAAAGATATTAAGGATGAGT  450

seq1  GGGCAGGAGAGAAGGTCACCGTGGACACACAGGAAACAGAGAATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAGAGAAGGTCACCGTGGACACACAGGAAACAGAGAATTC  496