BAC Information

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BAC

Clone NameB6Ng01-018F06
Chromosome13 (Build37)
Map Location 65,862,226 - 65,862,844
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018F06.bB6Ng01-018F06.g
ACCDH851760DH851761
length1,098975
definitionDH851760|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F06, 5' end.DH851761|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgatgaatcctcagactgcctttgaaagtaaagcatttgtca
cattcagtgcatttgtaaggtttctctcctgtatgaattctctgatgaat
tctcaaacagccattttcagtaaaggatttgtcacattcactacatttgt
agggtttctctcctgtatgaattctctgatgaatcctcagactgcctttg
aaagtaaagcatttgtcacattcagtgcatttgtaaggtttctctcctgt
atgaattctctgatgaatcctcaaactgaattttttagtaaagcatttgt
cacattcactgcatttgtaaggtttctctcctgtatgaattctctgatga
attctcagatggccattttcagtaaaggatttgtcacattgactacattt
gtaaggtttctcacctgtatgatttctctgatgaattctcagatggccat
tttcagtaaaggatttgtcacattgactacatttgtaaggtttctctcct
gtatgaattctctgatgaatattaagatgggatttttgggtaaagcattt
gtcacattcactgcatttgtaaggtttatctcctgtatgaatcctctgat
gaattctcagattgcctttttcagtaaagcatttctcacatacaatgcat
ttgtaaggtttctctcctgtatgaattctctgatgaatattaagatgaga
tttttgggtaaagcatttgtcacattcactacatttgtaaagtttctctc
cctgtatgaattctctgatgaatattaagatgaaatttgtgggtaaagca
tttgtcacattcactacatttataaattttctcttctgcatgaattccct
gatggatactaagattcgatctgatgggtaaagcatttgtcacttttact
acttctgtacgtttccttttcatgataaattctctgctgactttgaagtt
agtctctctgtgtagaatttgtcaatttactacatttgtagggttcactc
cagtattattcgtttcaccatgacttatgctagaatataaagcttcctag
attctgcattcccgtggtgattttcttctgcaggtggatcctggatga
gaattcattcaggagagaaaccttacaaatgtagtgaatgcgacaaatgc
tttactgacaaattcattctgggaaagcatcagagaattcatacaggaaa
gaaaccttacaaatgcagtgagtgtgacaaatgctttactgacaaaggct
atctgagagttcatcagagaattcatactggagagaaaccttacaaatgc
agtgagtgtgacaaatgctttactgacaaaggctatctgagagttcatca
gagaattcatactggagagaaaccttacaaatgcagtgaatgtgacaaat
gctttacccaacaatcccatcttagtattcatcagagaattcatacagga
gagaaaccttacaaatgtagtgaatgcgacaaatgctttactgacaaatt
cattctgggaaagcatcagagaattcatacaggaaagaaaccttacaaat
gcagtgagtgtgacaaatgctttactgacaaattcactctgagaaagcat
cagagaattcatacaggagagaaaccttacaaatgtaatgaatgtgacaa
atgctttactgacaaaggctatctgagagttcatcagagaattcatactg
gagagaaaccttacaaatgcagtgagtgtgacaaatgctttacccaacca
tcccatcttagtattcattgtagaattcattcaggagagaaaccttacaa
atgcagtgagtgtgacaaatgctttaaccaaccatcccatcttagtattc
atcgtagaattcattcaggagagaaaccttacaaatgtagtgaatgcgac
aaatgctttactgacaaattcactctgagaaagcatcagataattcatac
aggagagaaaccttacaaatgcagtgagtgtgacaaatgctttactgaca
aaggctatctgagagttcatcatagaattcatgcagagagaaaccttaca
aatgtagtgatgcgacaaatgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65862226_65862844
seq2: B6Ng01-018F06.g_77_193 (reverse)

seq1  CACACTCATTGCATTTGTAAGGTTTCTCTAAAATGTGTGTTCCTTTAAGT  50
      |||||||| ||||||||||||||||||            ||||| || | 
seq2  CACACTCACTGCATTTGTAAGGTTTCT------------TTCCTGTATGA  38

seq1  ATTTGGAGTGTACTGTGACATGCAAAGGCTTTAACACATTTATTACAATC  100
      |||         || ||        | |||||  || |            
seq2  ATT---------CTCTG--------ATGCTTTCCCAGA------------  59

seq1  ACAGGGCTTCTCTCAACTATGTGCTCATTTATGTACTTGGAGATGACTGT  150
                                                |||| | |
seq2  ------------------------------------------ATGAATTT  67

seq1  GATATGCAAAGGTTTTCTCATATCAATTACATTCATAAGGTTTCTCTCCT  200
      | |  | ||||  ||| ||  ||  | ||||||  |||||||||||||||
seq2  G-TCAGTAAAGCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCT  116

seq1  GCACAGTTTTTAAGTGTATTTGGAGATGACTGTGGCCTCGAAAGGGTTTA  250
      |                                                 
seq2  G-------------------------------------------------  117

seq1  CCTTATTCATTATATTCATGCAGGTTTTCTGCCATATGTGTTCTTTTATG  300
                                                        
seq2  --------------------------------------------------  117

seq1  TATGGGGTGATGACTGTGACACACAAGGGATTAGTACTCTGGAAAAATGG  350
                                                        
seq2  --------------------------------------------------  117

seq1  AAGGAGTTACTTTTTTGAATGTGTTCTTTTAAGTAGTTGTAGATGACAGT  400
                                                        
seq2  --------------------------------------------------  117

seq1  AAATTGCCAAGGTTTTTACCACAGTGATTACAATAATGAGGGTTCTCCCC  450
                                                        
seq2  --------------------------------------------------  117

seq1  AGTGTGCTTTACTTTGTGTACATGTGAAGAATTAAGACATGCAAAGGCTT  500
                                                        
seq2  --------------------------------------------------  117

seq1  TACTGCATTGACAACATTCATGAGGTTTCTCTCTTGTATGTGATCTTTTA  550
                                                        
seq2  --------------------------------------------------  117

seq1  TGTCATTGCAGATGACTGTGACTTGAAATGCTTTACAACGCTGATTACAT  600
                                                        
seq2  --------------------------------------------------  117

seq1  TCATAAGGTTTCTCTCCTG  619
                         
seq2  -------------------  117