BAC Information

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BAC

Clone NameB6Ng01-018H15
Chromosome13 (Build37)
Map Location 65,448,479 - 65,514,435
singlet/doubletdoublet
Overlap geneEG665742, LOC665750, LOC665753
Upstream geneCtsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738
Downstream geneEG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018H15.bB6Ng01-018H15.g
ACCDH851870DH851871
length494938
definitionDH851870|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H15, 5' end.DH851871|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,448,479 - 65,448,979)(65,513,497 - 65,514,435)
sequence
cagtacagccagggctacacagagaaaccctgtctcagaaaaccaaaaat
aaataaataaataaatccatatatcaaccagtaacccaggtataaaactc
ccacccaaacaacacaaacccagaaagcaaatcacctcaaacatagaggc
ctagacacctgcaaatgaatataatgaatagccaggaaaatatatcacca
agtaatccaagctatcctatcacagtaggtcctgagcaattaaaacatgc
aatagattcagtggaaaaatggttgttttggggaagggaaaggagtgaaa
acatgggggaaggtatagctgtgcacaaaaaagctttagacaggcacaca
gacagagagctgagagagacagccacaagggtagggaaatagaatggggt
ggggggagcttttgcaaagaacccacacagggaacatagcatatatttgc
ataagctggtggtttatgtttataaagcttactgacaacagccc
gaattcactctgtagaccaggccttgaactcagaatactgcctgcctttg
cctcccaagtgctgggattaaaggcgtgggccaccacgcccagctgatac
ctggattttcactgtgttgactgagggttgcctctttgatggacctgttt
ggagggtatgttcaggagggaatgcttaatgttggaagctggaaaaagag
gcaggcagaaagagatgatcttagcaacccacaaggagacatagtcagga
gagagattaagctgcctttgttctttggtaaagtgctagggataactgtg
taaattacatctgggatagcacatagtgtggtagatctatggaagcttac
tttgtgtcctttcaggcatggcatgaggttgagcagtatgtgtctgccca
agtgggggctgagcagaaggatgaggcaggaaaagaagggtaggtgggga
ttatctgtggtagctataggaggcatgcacagggggagaggaaacttgta
ctggtattttgtccagtggtaagggcaactgatattagggtctgcagtaa
catagtggggtaggtctttggacacattacctagtctactggcaggcact
tatattagggtgtgcagtacagatagtgaggtaggtctttggtcaaatta
cctagtctactggcaggcacttatattagggtctgcagtaacagatagtg
gggtgggcttttggacacattacctagtctactggcaggcactgatatta
gggtctgcagtaacagatagtgaggtaggtctttggtcaaattacctagt
ctactgggcaggcatgggcttgtcaatgaacaggagtaatttccataatt
atgggcttcaggcacagggtgagttgtaagctcatccaatgcagtttttt
gagattgacaattaacacttgtgcaacttcctatgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65448479_65448979
seq2: B6Ng01-018H15.b_43_542

seq1  GAATTCCAGTACAGCCAGGGCTACACAGAGAAACCCTGTCTCAGAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACAGCCAGGGCTACACAGAGAAACCCTGTCTCAGAAAACC  50

seq1  AAAAATAAATAAATAAATAAATCCATATATCAACCAGTAACCCAGGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAATAAATAAATCCATATATCAACCAGTAACCCAGGTATA  100

seq1  AAACTCCCACCCAAACAACACAAACCCAGAAAGCAAATCACCTCAAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCACCCAAACAACACAAACCCAGAAAGCAAATCACCTCAAACAT  150

seq1  AGAGGCCTAGACACCTGCAAATGAATATAATGAATAGCCAGGAAAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTAGACACCTGCAAATGAATATAATGAATAGCCAGGAAAATATA  200

seq1  TCACCAAGTAATCCAAGCTATCCTATCACAGTAGGTCCTGAGCAATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAGTAATCCAAGCTATCCTATCACAGTAGGTCCTGAGCAATTAAA  250

seq1  ACATGCAATAGATTCAGTGGAAAAATGGTTGTTTTGGGGAAGGGAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAATAGATTCAGTGGAAAAATGGTTGTTTTGGGGAAGGGAAAGGA  300

seq1  GTGAAAACATGGGGGAAGGTATAGCTGTGCACAAAAAAGCTTTAGACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAACATGGGGGAAGGTATAGCTGTGCACAAAAAAGCTTTAGACAGG  350

seq1  CACACAGACAGAGAGCTGAGAGAGACAGCCACAAGGGTAGGGAAATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACAGAGAGCTGAGAGAGACAGCCACAAGGGTAGGGAAATAGAA  400

seq1  TGGGGTGGGGGGAGCTTGTGCAGAGAACAGAGACAGGGAACAAAGCACAG  450
      ||||||||||||||||| |||| |||||  | |||||||||| |||| | 
seq2  TGGGGTGGGGGGAGCTTTTGCAAAGAACCCACACAGGGAACATAGCATAT  450

seq1  AGCTGCAGTAGCTGGTGGTTCATGTATATAAAGCACACCTGACAACAGCC  500
      |  ||||  ||||||||||| |||| ||||||||  | ||||||||||||
seq2  ATTTGCATAAGCTGGTGGTTTATGTTTATAAAGCTTA-CTGACAACAGCC  499

seq1  C  501
      |
seq2  C  500

seq1: chr13_65513497_65514435
seq2: B6Ng01-018H15.g_68_1005 (reverse)

seq1  GCTCATAGGATGTTTGCTCAAGTGTTCTTTGTGCACTCTC-AAAAACTGC  49
      |||||||||| | |||| ||||||||  |||| || |||| |||||||||
seq2  GCTCATAGGAAG-TTGCACAAGTGTTAATTGT-CAATCTCAAAAAACTGC  48

seq1  AATTGGTTGAGCTTTACAACTCACCCTGTGCCTG-AGCCCATTATTATTG  98
       ||||| ||||| ||||||||||||||||||||| ||||||| |||| ||
seq2  -ATTGGATGAGC-TTACAACTCACCCTGTGCCTGAAGCCCATAATTA-TG  95

seq1  GAAAATACTCCTGTTCATCGACAAG-CCATGCCTG-CCAGTAGACTAGGT  146
      |||| ||||||||||||| |||||| ||||||||| ||||||||||||||
seq2  GAAATTACTCCTGTTCATTGACAAGCCCATGCCTGCCCAGTAGACTAGGT  145

seq1  AATTTGACCAAAGACCTACCTCACTATCTGTTACTGCAGACCCTAATATC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGACCAAAGACCTACCTCACTATCTGTTACTGCAGACCCTAATATC  195

seq1  AGTGCCTGCCAGTAGACTAGGTAATGTGTCCAAAGCCCTACCCCACTATC  246
      ||||||||||||||||||||||||||||||||||  || |||||||||||
seq2  AGTGCCTGCCAGTAGACTAGGTAATGTGTCCAAAAGCCCACCCCACTATC  245

seq1  TGTTACTGCAGACCCTAATATAAGTGCCTGCCAGTAGACTAGGTAATTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGCAGACCCTAATATAAGTGCCTGCCAGTAGACTAGGTAATTTG  295

seq1  ACCAAAGACCTACCTCACTATCTGTACTGCACACCCTAATATAAGTGCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGACCTACCTCACTATCTGTACTGCACACCCTAATATAAGTGCCT  345

seq1  GCCAGTAGACTAGGTAATGTGTCCAAAGACCTACCCCACTATGTTACTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAGACTAGGTAATGTGTCCAAAGACCTACCCCACTATGTTACTGC  395

seq1  AGACCCTAATATCAGTTGCCCTTACCACTGGACAAAATACCAGTACAAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTAATATCAGTTGCCCTTACCACTGGACAAAATACCAGTACAAGT  445

seq1  TTCCTCTCCCCCTGTGCATGCCTCCTATAGCTACCACAGATAATCCCCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCCCCCTGTGCATGCCTCCTATAGCTACCACAGATAATCCCCAC  495

seq1  CTACCCTTCTTTTCCTGCCTCATCCTTCTGCTCAGCCCCCACTTGGGCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTCTTTTCCTGCCTCATCCTTCTGCTCAGCCCCCACTTGGGCAG  545

seq1  ACACATACTGCTCAACCTCATGCCATGCCTGAAAGGACACAAAGTAAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACTGCTCAACCTCATGCCATGCCTGAAAGGACACAAAGTAAGCT  595

seq1  TCCATAGATCTACCACACTATGTGCTATCCCAGATGTAATTTACACAGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGATCTACCACACTATGTGCTATCCCAGATGTAATTTACACAGTT  645

seq1  ATCCCTAGCACTTTACCAAAGAACAAAGGCAGCTTAATCTCTCTCCTGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGCACTTTACCAAAGAACAAAGGCAGCTTAATCTCTCTCCTGAC  695

seq1  TATGTCTCCTTGTGGGTTGCTAAGATCATCTCTTTCTGCCTGCCTCTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCCTTGTGGGTTGCTAAGATCATCTCTTTCTGCCTGCCTCTTTT  745

seq1  TCCAGCTTCCAACATTAAGCATTCCCTCCTGAACATACCCTCCAAACAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCCAACATTAAGCATTCCCTCCTGAACATACCCTCCAAACAGG  795

seq1  TCCATCAAAGAGGCAACCCTCAGTCAACACAGTGAAAATCCAGGTATCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAAGAGGCAACCCTCAGTCAACACAGTGAAAATCCAGGTATCAG  845

seq1  CTGGGCGTGGTGGCCCACGCCTTTAATCCCAGCACTTGGGAGGCAAAGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCGTGGTGGCCCACGCCTTTAATCCCAGCACTTGGGAGGCAAAGGC  895

seq1  AGGCAGTATTCTGAGTTCAAGGCCTGGTCTACAGAGTGAATTC  939
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTATTCTGAGTTCAAGGCCTGGTCTACAGAGTGAATTC  938